Tceal9 (transcription elongation factor A like 9) - Rat Genome Database

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Gene: Tceal9 (transcription elongation factor A like 9) Rattus norvegicus
Analyze
Symbol: Tceal9
Name: transcription elongation factor A like 9
RGD ID: 1592975
Description: Predicted to enable WW domain binding activity. Predicted to be active in nucleus. Orthologous to human TCEAL9 (transcription elongation factor A like 9); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-acetamidofluorene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC680354; MGC188857; RGD1560111; similar to WW domain binding protein 5; transcription elongation factor A protein-like 9; Wbp5; WW domain binding protein 5; WW domain-binding protein 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X99,245,645 - 99,247,715 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX99,228,458 - 99,247,763 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X106,791,333 - 106,794,667 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX106,791,333 - 106,794,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X106,336,493 - 106,338,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X123,554,560 - 123,556,844 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX99,898,412 - 99,900,388 (-)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function
WW domain binding  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9171351   PMID:12477932  


Genomics

Comparative Map Data
Tceal9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X99,245,645 - 99,247,715 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX99,228,458 - 99,247,763 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X106,791,333 - 106,794,667 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX106,791,333 - 106,794,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X106,336,493 - 106,338,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X123,554,560 - 123,556,844 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX99,898,412 - 99,900,388 (-)NCBICelera
Cytogenetic MapXq32NCBI
TCEAL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X103,356,506 - 103,358,462 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX103,356,489 - 103,358,462 (+)EnsemblGRCh38hg38GRCh38
GRCh37X102,611,434 - 102,613,390 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,498,036 - 102,500,053 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X102,417,524 - 102,419,540NCBI
CeleraX103,050,382 - 103,052,399 (+)NCBICelera
Cytogenetic MapXq22.2NCBI
HuRefX92,274,289 - 92,276,306 (+)NCBIHuRef
CHM1_1X102,504,370 - 102,506,387 (+)NCBICHM1_1
T2T-CHM13v2.0X101,803,512 - 101,805,468 (+)NCBIT2T-CHM13v2.0
Tceal9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,145,829 - 135,147,888 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX135,145,828 - 135,147,888 (+)EnsemblGRCm39 Ensembl
GRCm38X136,245,080 - 136,247,139 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,245,079 - 136,247,139 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X132,779,619 - 132,781,678 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X131,591,489 - 131,593,492 (+)NCBIMGSCv36mm8
MGSCv36X115,618,169 - 115,620,107 (+)NCBIMGSCv36mm8
CeleraX119,561,572 - 119,563,882 (+)NCBICelera
Cytogenetic MapXF1NCBI
Tceal9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955548505,592 - 507,360 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955548505,524 - 507,210 (+)NCBIChiLan1.0ChiLan1.0
TCEAL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X102,965,282 - 102,967,281 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX102,966,500 - 102,966,814 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X92,586,692 - 92,588,678 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TCEAL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X76,728,984 - 76,729,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX76,728,990 - 76,729,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX62,957,479 - 62,957,848 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X78,347,356 - 78,347,727 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X75,824,687 - 75,825,056 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X77,516,547 - 77,516,916 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X77,278,464 - 77,278,833 (+)NCBIUU_Cfam_GSD_1.0
LOC101972486
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X61,546,850 - 61,549,022 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365477,867,398 - 7,869,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCEAL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX84,277,034 - 84,279,367 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X84,276,985 - 84,279,377 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,065,178 - 98,067,415 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCEAL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X91,262,159 - 91,264,154 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX91,263,369 - 91,263,686 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606516,119,437 - 16,121,637 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tceal9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624954498,649 - 500,353 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624954498,031 - 500,335 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH140123  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0X106,336,856 - 106,337,075NCBIRnor5.0
Rnor_5.01149,208,193 - 49,208,412NCBIRnor5.0
Rnor_5.01149,909,565 - 49,909,784NCBIRnor5.0
RGSC_v3.4X123,556,271 - 123,556,489UniSTSRGSC3.4
RGSC_v3.41144,667,989 - 44,668,207UniSTSRGSC3.4
CeleraX99,898,767 - 99,898,985UniSTS
Celera1143,500,005 - 43,500,223UniSTS
Cytogenetic Map11q12UniSTS
Cytogenetic MapXq35UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:331
Count of miRNA genes:195
Interacting mature miRNAs:220
Transcripts:ENSRNOT00000050302
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 52 36 19 36 8 10 74 35 41 11 8
Low 5 5 5 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000050302   ⟹   ENSRNOP00000050036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX99,245,684 - 99,247,763 (+)Ensembl
Rnor_6.0 EnsemblX106,791,333 - 106,794,657 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110789   ⟹   ENSRNOP00000079799
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX99,228,458 - 99,247,712 (+)Ensembl
RefSeq Acc Id: NM_001127502   ⟹   NP_001120974
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X99,245,676 - 99,247,703 (+)NCBI
Rnor_6.0X106,791,333 - 106,794,660 (+)NCBI
Rnor_5.0X106,336,493 - 106,338,637 (-)NCBI
RGSC_v3.4X123,554,560 - 123,556,844 (+)RGD
CeleraX99,898,412 - 99,900,388 (-)RGD
Sequence:
RefSeq Acc Id: XM_006257281   ⟹   XP_006257343
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X99,245,645 - 99,247,715 (+)NCBI
Rnor_6.0X106,791,340 - 106,794,667 (+)NCBI
Rnor_5.0X106,336,493 - 106,338,637 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008773438   ⟹   XP_008771660
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X99,245,645 - 99,247,715 (+)NCBI
Rnor_6.0X106,791,340 - 106,794,667 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001120974 (Get FASTA)   NCBI Sequence Viewer  
  XP_006257343 (Get FASTA)   NCBI Sequence Viewer  
  XP_008771660 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66897 (Get FASTA)   NCBI Sequence Viewer  
  EDL85804 (Get FASTA)   NCBI Sequence Viewer  
  EDL85805 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001120974   ⟸   NM_001127502
- UniProtKB: B2RYT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257343   ⟸   XM_006257281
- Peptide Label: isoform X1
- UniProtKB: B2RYT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771660   ⟸   XM_008773438
- Peptide Label: isoform X1
- UniProtKB: B2RYT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000050036   ⟸   ENSRNOT00000050302
RefSeq Acc Id: ENSRNOP00000079799   ⟸   ENSRNOT00000110789

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYT6-F1-model_v2 AlphaFold B2RYT6 1-104 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701942
Promoter ID:EPDNEW_R12466
Type:initiation region
Name:Tceal9_1
Description:transcription elongation factor A like 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X106,791,387 - 106,791,447EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592975 AgrOrtholog
BioCyc Gene G2FUF-1629 BioCyc
Ensembl Genes ENSRNOG00000034198 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000050036 ENTREZGENE
  ENSRNOP00000050036.3 UniProtKB/TrEMBL
  ENSRNOP00000079799.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050302 ENTREZGENE
  ENSRNOT00000050302.5 UniProtKB/TrEMBL
  ENSRNOT00000110789.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921863 IMAGE-MGC_LOAD
InterPro TF_A-like/BEX-like UniProtKB/TrEMBL
KEGG Report rno:680354 UniProtKB/TrEMBL
MGC_CLONE MGC:188857 IMAGE-MGC_LOAD
NCBI Gene 680354 ENTREZGENE
Pfam BEX UniProtKB/TrEMBL
PhenoGen Tceal9 PhenoGen
UniProt B2RYT6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Tceal9  transcription elongation factor A like 9  Wbp5  WW domain binding protein 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Wbp5  WW domain binding protein 5  LOC680354  similar to WW domain binding protein 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680354  similar to WW domain binding protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL