Mir881 (microRNA 881) - Rat Genome Database

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Gene: Mir881 (microRNA 881) Rattus norvegicus
Analyze
Symbol: Mir881
Name: microRNA 881
RGD ID: 2325419
Description:
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-881
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X150,474,702 - 150,474,778 (-)NCBIGRCr8
mRatBN7.2X145,433,306 - 145,433,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX145,433,306 - 145,433,382 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX147,634,046 - 147,634,122 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X151,158,931 - 151,159,007 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X148,708,955 - 148,709,031 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X151,283,910 - 151,283,986 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX151,283,910 - 151,283,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X151,278,812 - 151,278,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX141,284,795 - 141,284,871 (-)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16381832   PMID:17604727   PMID:20403161  



.

Predicted Targets
Summary Value
Count of predictions:8405
Count of gene targets:5336
Count of transcripts:5781
Interacting mature miRNAs:rno-miR-881-3p, rno-miR-881-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat




reproductive system
9


RefSeq Transcripts NR_032262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000063052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX145,433,306 - 145,433,382 (-)Ensembl
Rnor_6.0 EnsemblX151,283,910 - 151,283,986 (-)Ensembl
RefSeq Acc Id: NR_032262
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X150,474,702 - 150,474,778 (-)NCBI
mRatBN7.2X145,433,306 - 145,433,382 (-)NCBI
Rnor_6.0X151,283,910 - 151,283,986 (-)NCBI
Rnor_5.0X151,278,812 - 151,278,888 (-)NCBI
CeleraX141,284,795 - 141,284,871 (-)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 9 of 9 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-785 BioCyc
Ensembl Genes ENSRNOG00000041299 Ensembl
miRBase MI0006123 ENTREZGENE
NCBI Gene 100314203 ENTREZGENE
PhenoGen Mir881 PhenoGen
RatGTEx ENSRNOG00000041299 RatGTEx
RNAcentral URS000057060F RNACentral
  URS000075ADCF RNACentral
  URS000075BF4A RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir881  microRNA 881  Mir881  microRNA mir-881  Name updated 61478 APPROVED
2010-06-02 Mir881  microRNA mir-881      Symbol and Name status set to provisional 70820 PROVISIONAL