Arxes2 (adipocyte-related X-chromosome expressed sequence 2) - Rat Genome Database

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Gene: Arxes2 (adipocyte-related X-chromosome expressed sequence 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Arxes2
Name: adipocyte-related X-chromosome expressed sequence 2
RGD ID: 2322092
Description: INVOLVED IN signal peptide processing (inferred); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: hypothetical protein LOC100360464; LOC100360464; signal peptidase complex subunit 3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X103,777,456 - 103,779,036 (+)NCBIGRCr8
mRatBN7.2X98,985,844 - 98,987,425 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX98,950,528 - 98,952,045 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX98,985,959 - 98,986,501 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X106,522,900 - 106,524,832 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX106,523,278 - 106,523,820 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX106,487,870 - 106,489,387 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X106,597,444 - 106,599,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X123,288,542 - 123,289,390 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX100,158,438 - 100,160,369 (-)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Arxes2
5 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:118
Interacting mature miRNAs:123
Transcripts:ENSRNOT00000070802
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

Markers in Region
RH135230  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X98,987,154 - 98,987,337 (+)MAPPERmRatBN7.2
Rnor_6.0X106,524,473 - 106,524,655NCBIRnor6.0
Rnor_5.0X106,597,621 - 106,597,803UniSTSRnor5.0
RGSC_v3.4X123,289,904 - 123,290,086UniSTSRGSC3.4
CeleraX100,158,615 - 100,158,797UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000070802   ⟹   ENSRNOP00000066197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX98,985,959 - 98,986,501 (+)Ensembl
Rnor_6.0 EnsemblX106,523,278 - 106,523,820 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075521   ⟹   ENSRNOP00000064651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX98,950,528 - 98,952,045 (+)Ensembl
RefSeq Acc Id: NM_001408908   ⟹   NP_001395837
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X103,777,456 - 103,779,036 (+)NCBI
mRatBN7.2X98,985,844 - 98,987,425 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395837 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000066197   ⟸   ENSRNOT00000070802
Ensembl Acc Id: ENSRNOP00000064651   ⟸   ENSRNOT00000075521
RefSeq Acc Id: NP_001395837   ⟸   NM_001408908
- UniProtKB: Q568Z4 (UniProtKB/Swiss-Prot),   A6KT32 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q568Z4-F1-model_v2 AlphaFold Q568Z4 1-180 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322092 AgrOrtholog
BioCyc Gene G2FUF-1639 BioCyc
Ensembl Genes ENSRNOG00000046858 Ensembl
  ENSRNOG00000049355 Ensembl
NCBI Gene 100360464 ENTREZGENE
PhenoGen Arxes2 PhenoGen
RatGTEx ENSRNOG00000046858 RatGTEx
  ENSRNOG00000049355 RatGTEx
UniProt A6KT32 ENTREZGENE
  Q568Z4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-07 Arxes2  adipocyte-related X-chromosome expressed sequence 2  LOC100360464  hypothetical protein LOC100360464  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100360464  hypothetical protein LOC100360464      Symbol and Name status set to provisional 70820 PROVISIONAL