Mir1912 (microRNA 1912) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mir1912 (microRNA 1912) Rattus norvegicus
Analyze
Symbol: Mir1912
Name: microRNA 1912
RGD ID: 4888584
Description: Orthologous to human MIR1912 (microRNA 1912); INTERACTS WITH cadmium atom (ortholog); cadmium dichloride (ortholog); phenol (ortholog).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-1912; rno-mir-1912
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X115,498,019 - 115,498,106 (+)NCBIGRCr8
mRatBN7.2X110,685,978 - 110,686,065 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX110,685,978 - 110,686,065 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX112,785,758 - 112,785,845 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X116,284,616 - 116,284,703 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X113,837,637 - 113,837,724 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X118,130,652 - 118,130,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX118,130,652 - 118,130,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X118,272,234 - 118,272,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX110,003,955 - 110,004,042 (+)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16381832   PMID:20403161  


Genomics

Comparative Map Data
Mir1912
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X115,498,019 - 115,498,106 (+)NCBIGRCr8
mRatBN7.2X110,685,978 - 110,686,065 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX110,685,978 - 110,686,065 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX112,785,758 - 112,785,845 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X116,284,616 - 116,284,703 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X113,837,637 - 113,837,724 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X118,130,652 - 118,130,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX118,130,652 - 118,130,739 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X118,272,234 - 118,272,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX110,003,955 - 110,004,042 (+)NCBICelera
Cytogenetic MapXq34NCBI
MIR1912
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X114,651,544 - 114,651,623 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX114,651,544 - 114,651,623 (+)EnsemblGRCh38hg38GRCh38
GRCh37X113,886,019 - 113,886,098 (+)NCBIGRCh37GRCh37hg19GRCh37
CeleraX114,321,217 - 114,321,296 (+)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX103,472,232 - 103,472,311 (+)NCBIHuRef
CHM1_1X113,796,953 - 113,797,032 (+)NCBICHM1_1
T2T-CHM13v2.0X113,060,046 - 113,060,125 (+)NCBIT2T-CHM13v2.0
Mir1912
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X145,792,437 - 145,792,523 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX145,792,437 - 145,792,523 (+)EnsemblGRCm39 Ensembl
GRCm38X147,009,441 - 147,009,527 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX147,009,441 - 147,009,527 (+)EnsemblGRCm38mm10GRCm38
CeleraX130,949,655 - 130,949,741 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX68.46NCBI

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:7600
Count of gene targets:4919
Count of transcripts:5275
Interacting mature miRNAs:rno-miR-1912-3p, rno-miR-1912-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression

ectoderm
endoderm
nervous system
respiratory system
8 1 8 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX110,685,978 - 110,686,065 (+)Ensembl
Rnor_6.0 EnsemblX118,130,652 - 118,130,739 (+)Ensembl
RefSeq Acc Id: NR_037370
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X115,498,019 - 115,498,106 (+)NCBI
mRatBN7.2X110,685,978 - 110,686,065 (+)NCBI
Rnor_6.0X118,130,652 - 118,130,739 (+)NCBI
Rnor_5.0X118,272,234 - 118,272,321 (+)NCBI
CeleraX110,003,955 - 110,004,042 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:4888584 AgrOrtholog
BioCyc Gene G2FUF-1449 BioCyc
Ensembl Genes ENSRNOG00000046748 Ensembl
miRBase MI0015450 ENTREZGENE
NCBI Gene 100526592 ENTREZGENE
PhenoGen Mir1912 PhenoGen
RatGTEx ENSRNOG00000046748 RatGTEx
RNAcentral URS000075B30F RNACentral
  URS000075E070 RNACentral
  URS000075EFEF RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir1912  microRNA 1912  Mir1912  microRNA mir-1912  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-11-23 Mir1912  microRNA mir-1912      Symbol and Name status set to provisional 70820 PROVISIONAL