Rps26l5 (ribosomal protein S26 like 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rps26l5 (ribosomal protein S26 like 5) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps26l5 (Ensembl: LOC100361854)
Name: ribosomal protein S26 like 5 (Ensembl:ribosomal protein S26-like)
RGD ID: 2319323
Description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 40S ribosomal protein S26-like; LOC100361854; ribosomal protein S26-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rps26  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X112,618,864 - 112,619,204 (-)NCBIGRCr8
mRatBN7.2X107,822,185 - 107,822,525 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX107,822,178 - 107,822,525 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_WKY_Bbb_1.0X111,017,765 - 111,018,105 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X115,495,660 - 115,496,062 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX115,495,698 - 115,496,045 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X113,950,763 - 113,951,168 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X34,292,188 - 34,292,535 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX107,209,596 - 107,209,998 (-)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8706699   PMID:15716004   PMID:15883184   PMID:19946888   PMID:20458337   PMID:22658674   PMID:22681889   PMID:23376485   PMID:23636399   PMID:24930395   PMID:25468996   PMID:25957688  


Genomics

Variants

.
Variants in Rps26l5
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 3 10 14 14 3 14 12 16 28 2
Medium 33 43 27 16 27 8 11 62 19 13 9 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000051134   ⟹   ENSRNOP00000048116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX107,822,178 - 107,822,525 (-)Ensembl
Rnor_6.0 EnsemblX115,495,698 - 115,496,045 (-)Ensembl
RefSeq Acc Id: XM_002730210   ⟹   XP_002730256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X107,822,116 - 107,822,555 (-)NCBI
Rnor_6.0X115,495,660 - 115,496,062 (-)NCBI
Rnor_5.0X113,950,763 - 113,951,168 (-)NCBI
RGSC_v3.4X34,292,188 - 34,292,535 (-)RGD
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8D7-F1-model_v2 AlphaFold D3Z8D7 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701973
Promoter ID:EPDNEW_R12492
Type:single initiation site
Name:LOC100361854_1
Description:ribosomal protein S26-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X115,496,068 - 115,496,128EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2319323 AgrOrtholog
BioCyc Gene G2FUF-1492 BioCyc
Ensembl Genes ENSRNOG00000029512 Ensembl, ENTREZGENE
NCBI Gene 100361854 ENTREZGENE
PhenoGen Rps26l5 PhenoGen
RatGTEx ENSRNOG00000029512 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps26l5  ribosomal protein S26 like 5  LOC100361854  ribosomal protein S26-like  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361854  ribosomal protein S26-like      Symbol and Name status set to provisional 70820 PROVISIONAL