LOC120099449 (small nucleolar RNA SNORA69) - Rat Genome Database

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Gene: LOC120099449 (small nucleolar RNA SNORA69) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120099449
Name: small nucleolar RNA SNORA69
RGD ID: 41331878
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AC107580.1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X121,193,461 - 121,193,594 (-)NCBIGRCr8
mRatBN7.2X116,327,776 - 116,327,909 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX116,327,776 - 116,327,909 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX123,705,795 - 123,705,928 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,327,776 - 116,327,909 (-)Ensembl
RefSeq Acc Id: XR_005498627
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,193,461 - 121,193,594 (-)NCBI
mRatBN7.2X116,327,776 - 116,327,909 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1297 BioCyc
Ensembl Genes ENSRNOG00000061195 Ensembl
NCBI Gene LOC120099449 ENTREZGENE
PhenoGen LOC120099449 PhenoGen
RatGTEx ENSRNOG00000061195 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099449  small nucleolar RNA SNORA69  AC107580.1    Data merged from RGD:15013899 737654 PROVISIONAL
2021-01-27 LOC120099449  small nucleolar RNA SNORA69      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AC107580.1        Symbol and Name status set to provisional 45752 PROVISIONAL