LOC120099519 (small nucleolar RNA SNORA26) - Rat Genome Database

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Gene: LOC120099519 (small nucleolar RNA SNORA26) Rattus norvegicus
Analyze
Symbol: LOC120099519
Name: small nucleolar RNA SNORA26
RGD ID: 41227588
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07041632.1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X132,877,057 - 132,877,177 (+)NCBIGRCr8
mRatBN7.2X127,999,183 - 127,999,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX127,999,183 - 127,999,303 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX135,651,474 - 135,651,594 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120099519
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000091852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX127,999,183 - 127,999,303 (+)Ensembl
RefSeq Acc Id: XR_005498681
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X132,877,057 - 132,877,177 (+)NCBI
mRatBN7.2X127,999,183 - 127,999,303 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1121 BioCyc
Ensembl Genes ENSRNOG00000059253 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000091852 ENTREZGENE
NCBI Gene LOC120099519 ENTREZGENE
PhenoGen LOC120099519 PhenoGen
RatGTEx ENSRNOG00000059253 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099519  small nucleolar RNA SNORA26  AABR07041632.1    Data merged from RGD:15012427 737654 PROVISIONAL
2021-01-27 LOC120099519  small nucleolar RNA SNORA26      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07041632.1        Symbol and Name status set to provisional 45752 PROVISIONAL