D20S1001 Marker Search Result - Rat Genome Database

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Marker: D20S1001

Symbol: D20S1001
Previously known as:
RGD ID: 5500292
Expected Size: 100 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,392,481 - 116,392,581 (+)MAPPERmRatBN7.2
Rnor_6.0X123,770,400 - 123,770,499NCBIRnor6.0
Rnor_5.0X123,906,927 - 123,907,026UniSTSRnor5.0
RGSC_v3.4X7,762,311 - 7,762,410UniSTSRGSC3.4
CeleraX115,620,104 - 115,620,203UniSTS
Cytogenetic MapXq12UniSTS
Is Marker For: Genes:   Nkap  




#
Reference Title
Reference Citation
1. UniSTS Pipeline RGD automated pipelines


 
Forward Primer GAGAGCCCTTGCATCCTTTA
Reverse Primer CTTCCCTTTGGTCTTTCTGT
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1565955NkapNFKB activating proteinX116373031116392677Rat
RefSeq Transcripts NM_001024872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat

1 to 10 of 11 rows


Database
Acc Id
Source(s)
NCBI Gene 298342 UniSTS