Yipf6 (Yip1 domain family, member 6)

Gene: Yipf6 (Yip1 domain family, member 6) Rattus norvegicus

Analyze

Symbol:

Yipf6

Name:

Yip1 domain family, member 6

RGD ID:

1566154

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within intestinal epithelial cell development. Predicted to be located in COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum. Predicted to be active in trans-Golgi network. Orthologous to human YIPF6 (Yip1 domain family member 6); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC116126; similar to RIKEN cDNA A430107J06; YIP1 family member 6

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YIPF6 (Yip1 domain family member 6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Yipf6 (Yip1 domain family, member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Yipf6 (Yip1 domain family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YIPF6 (Yip1 domain family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YIPF6 (Yip1 domain family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Yipf6 (Yip1 domain family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YIPF6 (Yip1 domain family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	YIPF6 (Yip1 domain family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Yipf6 (Yip1 domain family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Yipf6 (Yip1 domain family, member 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	YIPF6 (Yip1 domain family member 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	yipf6 (Yip1 domain family, member 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	W02D9.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3652	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YIP4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	yipf6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	68,079,754 - 68,091,845 (+)	NCBI		GRCr8
mRatBN7.2	X	64,039,602 - 64,051,715 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	64,040,952 - 64,054,702 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	65,524,701 - 65,532,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	69,025,050 - 69,033,314 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	66,586,007 - 66,594,271 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	68,625,760 - 68,637,780 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	68,626,185 - 68,637,416 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	69,499,397 - 69,511,418 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	86,941,818 - 86,950,082 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	64,417,679 - 64,425,943 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acrylamide (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

perfluorooctane-1-sulfonic acid (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

theophylline (ISO)

thioacetamide (EXP)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA)

intestinal epithelial cell development (IEA,ISO)

Cellular Component

cis-Golgi network (IEA,ISO)

COPII-coated ER to Golgi transport vesicle (IEA,ISO)

endoplasmic reticulum (IEA,ISO)

Golgi medial cisterna (IEA,ISO,ISS)

Golgi membrane (IEA)

Golgi trans cisterna (IEA,ISO,ISS)

trans-Golgi network (IBA,IEA,ISO,ISS)

Molecular Function

identical protein binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:22802641	PMID:28286305

Genomics

Comparative Map Data

Yipf6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	68,079,754 - 68,091,845 (+)	NCBI		GRCr8
mRatBN7.2	X	64,039,602 - 64,051,715 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	64,040,952 - 64,054,702 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	65,524,701 - 65,532,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	69,025,050 - 69,033,314 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	66,586,007 - 66,594,271 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	68,625,760 - 68,637,780 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	68,626,185 - 68,637,416 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	69,499,397 - 69,511,418 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	86,941,818 - 86,950,082 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	64,417,679 - 64,425,943 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

YIPF6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	68,499,051 - 68,537,282 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	68,498,562 - 68,537,282 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	67,718,893 - 67,757,124 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	67,635,611 - 67,669,026 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	68,070,045 - 68,103,397 (+)	NCBI		Celera
Cytogenetic Map	X	q12-q13.1	NCBI
HuRef	X	61,546,257 - 61,584,629 (+)	NCBI		HuRef
CHM1_1	X	67,611,366 - 67,649,863 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	66,932,508 - 66,970,741 (+)	NCBI		T2T-CHM13v2.0

Yipf6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	97,979,922 - 97,992,627 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	97,979,922 - 97,992,623 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	98,936,316 - 98,949,021 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	98,936,316 - 98,949,017 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	96,133,120 - 96,144,360 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	95,140,500 - 95,151,740 (+)	NCBI		MGSCv36	mm8
Celera	X	85,879,308 - 85,890,754 (+)	NCBI		Celera
Cytogenetic Map	X	C3	NCBI
cM Map	X	43.19	NCBI

Yipf6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	8,084,886 - 8,101,624 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955475	8,085,017 - 8,101,624 (+)	NCBI	ChiLan1.0	ChiLan1.0

YIPF6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	68,146,112 - 68,225,060 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	68,149,708 - 68,227,390 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	57,738,236 - 57,815,002 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	67,803,914 - 67,879,812 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	67,803,940 - 67,839,711 (+)	Ensembl	panpan1.1		panPan2

YIPF6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	53,026,414 - 53,049,619 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	53,026,609 - 53,045,376 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	43,840,826 - 43,864,105 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	53,986,027 - 54,009,311 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	53,986,275 - 54,009,309 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	51,960,734 - 51,984,014 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	53,286,087 - 53,309,366 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	53,213,136 - 53,236,425 (+)	NCBI		UU_Cfam_GSD_1.0

Yipf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	49,041,150 - 49,064,654 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936777	169,080 - 193,231 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936777	169,794 - 193,155 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YIPF6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	54,661,829 - 54,687,976 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	54,661,771 - 54,687,988 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	61,698,587 - 61,724,762 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YIPF6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	58,345,915 - 58,381,517 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	58,346,203 - 58,379,743 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	186,978 - 267,810 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Yipf6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624891	1,802,679 - 1,838,666 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624891	1,802,679 - 1,832,450 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Yipf6
26 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	614
Count of miRNA genes:	297
Interacting mature miRNAs:	374
Transcripts:	ENSRNOT00000008705
Prediction methods:	Microtar, Miranda, Pita
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
70221	Bp56	Blood pressure QTL 56	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	57042141	65612192	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	49	33	19	33	5	5	74	35	41	11	5
Low		6	8	8		8	3	6					3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000008705 ⟹ ENSRNOP00000008705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	64,040,952 - 64,047,933 (+)	Ensembl
Rnor_6.0 Ensembl	X	68,627,329 - 68,635,593 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076699 ⟹ ENSRNOP00000068227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	68,627,313 - 68,637,027 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076795 ⟹ ENSRNOP00000068121

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	64,041,195 - 64,054,702 (+)	Ensembl
Rnor_6.0 Ensembl	X	68,627,329 - 68,632,512 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090942 ⟹ ENSRNOP00000072895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	68,626,185 - 68,637,416 (+)	Ensembl

RefSeq Acc Id:

NM_001025747 ⟹ NP_001020918

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	68,081,394 - 68,089,658 (+)	NCBI
mRatBN7.2	X	64,041,194 - 64,049,458 (+)	NCBI
Rnor_6.0	X	68,627,329 - 68,635,593 (+)	NCBI
Rnor_5.0	X	69,499,397 - 69,511,418 (+)	NCBI
RGSC_v3.4	X	86,941,818 - 86,950,082 (+)	RGD
Celera	X	64,417,679 - 64,425,943 (+)	RGD

Sequence:

show sequence

CCAAGATGGCGGAAGCGGAGGACTCTCCTGGAGAGCAGGAGGCAACGTCATCTAAGCCCCTGTT
TGCAGGGTTATCTGATGTGTCAATTTCACAGGACATTCCCATAGAAGGAGAGATTACCATCCCC
TCAGGAACTCGTGCTCAAGAATGTGACAGCTCCACACTAAATGAATCCATTCGTCGGACCATCA
TGCGAGATCTAAAAGCTGTGGGAAGGAAGTTTATGCACGTTTTATATCCAAGGAAAAGTAATAC
CCTGTTAAGAGATTGGGACTTGTGGGGCCCGTTGATTCTTTGTGTGTCACTTGCATTGATGCTA
CAGAAAAGTTCTGTAGAAGGGAAGAGGGATGGCGGAAGCCCAGAGTTTGCAGAAGTGTTCGTTA
TCATCTGGTTTGGAGCAGTTACCATCACACTAAATTCCAAACTTCTTGGTGGAAACATTTCTTT
TTTTCAGAGTCTCTGTGTATTAGGATACTGTGTACTTCCTTTGAACATTGCAATGCTGATCTGC
CGCCTCCTGCTTTTGGCAGGGCAGGGACCAATAAACTTCATGATTCGACTTTTTGTCGTGTTGG
TGATGTTCGCTTGGTCTGTGATAGCATCTACAGCATTCCTTGCTGACTGCCAGCCTCCAAACCG
AAAAGCCCTGGCAGTGTATCCCGTCTTTTTATTCTACTTTGTTGTCAGTTGGATGATACTCACA
TTCACTCCATAAATCCGGATACACACATTCAATACCAATGAACTGCAAGCCCACCTGAGAAAGA
TAATGGTTACCAAGACAACTTCCCCTACTCTCGTTCAATTGTTGGGGTATTAAAGGGGAGCCAC
ATACCACTGTTGTCATTTATATAGAAACTGATATTCGCAAGGCTGTCCTTTTCCTCTTAATATT
ACTATTTTCAAATACTTGTACATACCATGCATAGTAATGCCTCCTTAAGGCATGATGAAGCTAT
TTGTGTGACAACCAGTGACTTGAGCAAGCGGATCCACTCTACAAATTACAAAAGAGTTGGTGAC
CATCTTCAGCTTAGAGAATATTTGTTCAGGTGCAGCTCTTAAACACATTGCCTTATGACTATTA
GAATATGCCTCTTTTCATAAATAACATTCTGTATCCATTTATTTTCTTCTCACCCCCAAACTGG
AGAAGGTAACAACAAGAGGTTAGGAACAAGGTTTGTAGATGTGGGAAGAAAAACCATGTTAACC
AATTTTCAGATTTTGATCAGAGGTACTGCTATACTTGGTTTTTCATTTGTTTTTAAGCAAATAA
CATCTAAAGAATCAACTTTTAAAGTATTTTCGTATAGTTACCTTTCTGTCATGTGTAACAGTAC
CTCAGCTAACATTCTAGTTTTTAATCTTTCATACAATGACAGCAGTCAAACATGCAACTTCTCT
TTGACTGGCGTTCTTGATGGTTTAATGTTTGAGCTTTTCTAAGTAGTAGAAGACCTCAGAAATC
TAGGTTTATGGTTTGTAATGCATATTGTCATGTGGACACCTTCCTTTAAGGCATAGCTTATATA
TTGGATATCTAAAAGAGCCTATTTTGTATGACCCAGCCTCACACTAGAAAGGAAAGCTACATCA
GAAGCATGCATTTAACCAAGTGGACATAGAGATCTAGTGTTCTGAAGGCCGGATAATGGAAGGA
TGCTTACACACATGATGAAGGGTTAGTTATGTTTACAGCCGCTGCCTTTCCATAGTGGGCTCAG
CACAGTTTGTTTGTTTTCATTATATATTATGGAGGGGTTTTTTTTGGATAGAAGGCTAAGGAAT
AGCAATTTGTTTTATGTGTTTTAGATTTTTTGTAAAGGTAATTAGCTTCCCTTTAGATATGTAC
ATTTTGCACATGTGCATCTACCTATACTCTCAGATATTTATGCGCAAGAGTGAAGGCTTTTCAG
GGAACAAAACATCTAAGGCAGGCTGATTTTCAGCTAAAGAGGACTCCTGTAAGGTAGTAAGAAC
TGATACCTTCTATATGGTTCACACTGAAGAATGCTAATTGATGACTAGGAGTCAGAAGACATTC
GTTGTAAATATGCAGTAACCTGTAAAGATAGCAATTTCTTATTCCATGTGTTTTATCCTAGAAT
TTAAATATTTATTGATTTTTGTATTTAAAGACTACCTTCATATAAATATATGATTCTAAAACCA
TAATTTTTCTCCTTCTCAGAGTAACCAAGTGAGCGACACTAGGCCAAATGGGTTCATGGGATGA
GTTACAAAGCATTACTGAGTTTATCCTCTGTCCTGACGTTGTCTAATTGTTTAGGAGTATATAT
TTGAGTTCATTGTAATTTATCTTTTAAATTACAAATTGTGAAGATAAATCTGTGCTTCAATCTT
AAAAACTTTAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257077 ⟹ XP_006257139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	68,079,754 - 68,091,845 (+)	NCBI
mRatBN7.2	X	64,039,602 - 64,051,715 (+)	NCBI
Rnor_6.0	X	68,625,760 - 68,637,780 (+)	NCBI
Rnor_5.0	X	69,499,397 - 69,511,418 (+)	NCBI

Sequence:

show sequence

CTGGGCCAAGAGGTGAGCCAGAGCAACCAGGAGTCAGAAACATCTAGGATTTGTCAGGATGAGA
AGAGAGCCCTGCTGAGGACGTGGGAAATGTCACTTCAGAGCCACATCCAGTGAACTCGCCCTGG
TTTCGCAAAGACGCATGGGAGGGGAACAGACGGAGGTTTACCAAGATGGCGGAAGCGGAGGACT
CTCCTGGAGAGCAGGAGGCAACGTCATCTAAGCCCCTGTTTGCAGGGTTATCTGATGTGTCAAT
TTCACAGGACATTCCCATAGAAGGAGAGATTACCATCCCCTCAGGAACTCGTGCTCAAGAATGT
GACAGCTCCACACTAAATGAATCCATTCGTCGGACCATCATGCGAGATCTAAAAGCTGTGGGAA
GGAAGTTTATGCACGTTTTATATCCAAGGAAAAGTAATACCCTGTTAAGAGATTGGGACTTGTG
GGGCCCGTTGATTCTTTGTGTGTCACTTGCATTGATGCTACAGAAAAGTTCTGTAGAAGGGAAG
AGGGATGGCGGAAGCCCAGAGTTTGCAGAAGTGTTCGTTATCATCTGGTTTGGAGCAGTTACCA
TCACACTAAATTCCAAACTTCTTGGTGGAAACATTTCTTTTTTTCAGAGTCTCTGTGTATTAGG
ATACTGTGTACTTCCTTTGAACATTGCAATGCTGATCTGCCGCCTCCTGCTTTTGGCAGGGCAG
GGACCAATAAACTTCATGATTCGACTTTTTGTCGTGTTGGTGATGTTCGCTTGGTCTGTGATAG
CATCTACAGCATTCCTTGCTGACTGCCAGCCTCCAAACCGAAAAGCCCTGGCAGTGTATCCCGT
CTTTTTATTCTACTTTGTTGTCAGTTGGATGATACTCACATTCACTCCATAAATCCGGATACAC
ACATTCAATACCAATGAACTGCAAGCCCACCTGAGAAAGATAATGGTTACCAAGACAACTTCCC
CTACTCTCGTTCAATTGTTGGGGTATTAAAGGGGAGCCACATACCACTGTTGTCATTTATATAG
AAACTGATATTCGCAAGGCTGTCCTTTTCCTCTTAATATTACTATTTTCAAATACTTGTACATA
CCATGCATAGTAATGCCTCCTTAAGGCATGATGAAGCTATTTGTGTGACAACCAGTGACTTGAG
CAAGCGGATCCACTCTACAAATTACAAAAGAGTTGGTGACCATCTTCAGCTTAGAGAATATTTG
TTCAGGTGCAGCTCTTAAACACATTGCCTTATGACTATTAGAATATGCCTCTTTTCATAAATAA
CATTCTGTATCCATTTATTTTCTTCTCACCCCCAAACTGGAGAAGGTAACAACAAGAGGTTAGG
AACAAGGTTTGTAGATGTGGGAAGAAAAACCATGTTAACCAATTTTCAGATTTTGATCAGAGGT
ACTGCTATACTTGGTTTTTCATTTGTTTTTAAGCAAATAACATCTAAAGAATCAACTTTTAAAG
TATTTTCGTATAGTTACCTTTCTGTCATGTGTAACAGTACCTCAGCTAACATTCTAGTTTTTAA
TCTTTCATACAATGACAGCAGTCAAACATGCAACTTCTCTTTGACTGGCGTTCTTGATGGTTTA
ATGTTTGAGCTTTTCTAAGTAGTAGAAGACCTCAGAAATCTAGGTTTATGGTTTGTAATGCATA
TTGTCATGTGGACACCTTCCTTTAAGGCATAGCTTATATATTGGATATCTAAAAGAGCCTATTT
TGTATGACCCAGCCTCACACTAGAAAGGAAAGCTACATCAGAAGCATGCATTTAACCAAGTGGA
CATAGAGATCTAGTGTTCTGAAGGCCGGATAATGGAAGGATGCTTACACACATGATGAAGGGTT
AGTTATGTTTACAGCCGCTGCCTTTCCATAGTGGGCTCAGCACAGTTTGTTTGTTTTCATTATA
TATTATGGAGGGGTTTTTTTTGGATAGAAGGCTAAGGAATAGCAATTTGTTTTATGTGTTTTAG
ATTTTTTGTAAAGGTAATTAGCTTCCCTTTAGATATGTACATTTTGCACATGTGCATCTACCTA
TACTCTCAGATATTTATGCGCAAGAGTGAAGGCTTTTCAGGGAACAAAACATCTAAGGCAGGCT
GATTTTCAGCTAAAGAGGACTCCTGTAAGGTAGTAAGAACTGATACCTTCTATATGGTTCACAC
TGAAGAATGCTAATTGATGACTAGGAGTCAGAAGACATTCGTTGTAAATATGCAGTAACCTGTA
AAGATAGCAATTTCTTATTCCATGTGTTTTATCCTAGAATTTAAATATTTATTGATTTTTGTAT
TTAAAGACTACCTTCATATAAATATATGATTCTAAAACCATAATTTTTCTCCTTCTCAGAGTAA
CCAAGTGAGCGACACTAGGCCAAATGGGTTCATGGGATGAGTTACAAAGCATTACTGAGTTTAT
CCTCTGTCCTGACGTTGTCTAATTGTTTAGGAGTATATATTTGAGTTCATTGTAATTTATCTTT
TAAATTACAAATTGTGAAGATAAATCTGTGCTTCAATCTTAAAAACTTTAAAACTAACCCTAGT
ATTTGAAATTTGTCATAAAATAGCATTTCTTTCTAGTATCTGAGAAGTTTAAACATCCCATTCA
AATATATTTCCTAAGTTGTTTTGTAATCTGCCCAAGTAATTATAATAATGAAATAATCATACTT
CTCAAATTTAGTCTTTGCTGGATTTTACTCAGGTGAACCATTTACTCTGAAATTCCTAAGGCCA
CAAACCCTAAGGGTTTTGGAGGGTTAAACACATTGGGTATGAGGCAGCTTGATGCCTGTGTGTT
AATCTGTTGCTCTTGGGTGAGTTAATGAATGGTTTTTCTACAGCTTAAAATGGGAATGTAGGAC
CGAGGCTGTAGTTCAGTGATAGAGCATTAGCCTGGCATGCACAGTACTCTGGGCTCAATCGTTG
CCATTGCCAAAAAAGGTGGATAAACTGGAGGCCTAATTACTTTTTCCTGGAATTAAATGATTAG
AGGATATAAATATTTTTAATATATGCAAACGATCTGTTGCTTTCTGTGACAAGTGACATTCTGA
CTCTGGAAGTTGTAATATAGCTTTTCCTGTTTTGCTGCAAAGGCGCATGGTTGATTGTAGAAAT
GAGAACTGGAAGGGCAGAAGCATCCAGGAAAGGAACTCCTGTTCTAAGATGGCAAAGTTTCATG
CTTCTGGTGATTTTCAAGCTTTTGAGTATCCCTGCAGGATGTACATGGGTATCATTGCCAACTT
GGATGATCACCTGCTGCTTCTACACCTGAGACCATGACACTGGTTTACATGTCTTAGTTATAGG
AAGAGTAAAGACTTGATTTTATTGGGGTTCAGATTACAAAACTGTAATGATGACAATGTATTTG
AATGTTCTATGTTCCTTAAAAGTCATCGAATACTGAGGGTTTGTGTGTGTGTGTGTGTTTTGTT
TGGTCTTGGCTTCAAAGTTATGTAAGTTGAATTTGATCTTTTCATTATGGGATCTTTCTTTAGT
TGGTCAAAGTTCATAGCATGAGACTGATAAGCATTTCACTGTTGACTCTGTCTTTTATAAATAG
TACCCTCAAAAATGTGATTAGAAGGCTAATAGGCCTATGCTTGGAGATATAATATAATCTGTTG
ACTTACTACATTTGAGCTGGCTGCTTATTTCTGGAGATGAAAATGAAAATTTGTTAGTTGATAT
TTCTGGGTATCACCAAGTCGTGCTAGTATGGTTTGAGCACTGAAGTGATCCCTGACTAAACTGT
CAGTTTCTACGATGGATGGAAATAACTATGAATGTTGATCAAGCCACATATGTACATTAGAGAT
ACTTCTCTAGATTGTGTGTGACAGGGAGAGTAATTTATGATTATTAATAACGATTATTGGACAT
TTAATGTACACCAATTTACTATTCTAAGTTTAAAAGAATTTTTGGAAAAGCTTTATTAAAGTAT
ACTTTACCGTGAAAATCCATCCTTTTAAAGTGTACAATTCAGCAGTCCTTACTATCTTCACAGA
ATTACCCAACCATCATCACTGTCTAATTTGAGAATGTCTGTCTTTATCACTCTGCAGAGAAAGA
AGTCACTCCAGTTCTTAATTCACCTTTAGTTCCCATCAACTACTAGTCTACTCTTATCTGTCTG
GCCAGGCTTAAGCTTGCTGTCTCCTCCACTCTTCAACATGAAGTGCTATAATTCTCATTTTACA
GTAGAAAATTTAGGCACAGAAATGTAACTGCCCAAGGTCATGTATTAATAATGCATGCAAGTGA
ATTGATGGTAAGAAAGCATTAGATGAAATGCAGTATGTATTGCACTGTTAGGCACACAGAAGGA
ACATTTCCTTCCCAGGGTATGTCCCCTCTTACTGACCTTTGCACCTTAGAACTGACTGGAGGTA
GATATGTCTTGTTTTTTTTTTTTCTCAGAGTAATGAACTCTGGCATTTGAGCACACAAAGCAGG
CAGACTTAGAAAGACATAGGTTTGCTGCCCATACTCCTTGAACCCCTTTCCTCTTTTCGCACAC
ACATAATCTATTTTTCTTTAAGCTTGAAGAATCAAACTACTACTGAAAATTTTTTCCATTTCAC
ATATACCACATAGGGTACTGAGTCTATTTGTAAGACTTAAGATTAAAGTCATTCAAGAACTGAA
TGCCTTTCTATTTGGATAGATGTGAGAATAAAGATTTTTGCCTTAATAAAGCTTGTTCATTTCT
GGTC

hide sequence

RefSeq Acc Id:

XM_039099896 ⟹ XP_038955824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	68,081,393 - 68,091,845 (+)	NCBI
mRatBN7.2	X	64,041,181 - 64,051,715 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020918	(Get FASTA)	NCBI Sequence Viewer
	XP_006257139	(Get FASTA)	NCBI Sequence Viewer
	XP_038955824	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97987	(Get FASTA)	NCBI Sequence Viewer
	EDL95952	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008705.6
	ENSRNOP00000068121
	ENSRNOP00000068121.2
	ENSRNOP00055044417
	ENSRNOP00060029169
	ENSRNOP00065021517
GenBank Protein	Q4QQU5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020918 ⟸ NM_001025747

- UniProtKB:

Q4QQU5 (UniProtKB/Swiss-Prot), A6IQ61 (UniProtKB/TrEMBL), A0A8L2Q3E7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEAEDSPGEQEATSSKPLFAGLSDVSISQDIPIEGEITIPSGTRAQECDSSTLNESIRRTIMR
DLKAVGRKFMHVLYPRKSNTLLRDWDLWGPLILCVSLALMLQKSSVEGKRDGGSPEFAEVFVII
WFGAVTITLNSKLLGGNISFFQSLCVLGYCVLPLNIAMLICRLLLLAGQGPINFMIRLFVVLVM
FAWSVIASTAFLADCQPPNRKALAVYPVFLFYFVVSWMILTFTP

hide sequence

RefSeq Acc Id:	XP_006257139 ⟸ XM_006257077
- Peptide Label:	isoform X1
- UniProtKB:	Q4QQU5 (UniProtKB/Swiss-Prot), A6IQ61 (UniProtKB/TrEMBL), A0A8L2Q3E7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEAEDSPGEQEATSSKPLFAGLSDVSISQDIPIEGEITIPSGTRAQECDSSTLNESIRRTIMR DLKAVGRKFMHVLYPRKSNTLLRDWDLWGPLILCVSLALMLQKSSVEGKRDGGSPEFAEVFVII WFGAVTITLNSKLLGGNISFFQSLCVLGYCVLPLNIAMLICRLLLLAGQGPINFMIRLFVVLVM FAWSVIASTAFLADCQPPNRKALAVYPVFLFYFVVSWMILTFTP hide sequence

RefSeq Acc Id:

ENSRNOP00000008705 ⟸ ENSRNOT00000008705

RefSeq Acc Id:

ENSRNOP00000072895 ⟸ ENSRNOT00000090942

RefSeq Acc Id:

ENSRNOP00000068227 ⟸ ENSRNOT00000076699

RefSeq Acc Id:

ENSRNOP00000068121 ⟸ ENSRNOT00000076795

RefSeq Acc Id:	XP_038955824 ⟸ XM_039099896
- Peptide Label:	isoform X2

Protein Domains

Yip1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4QQU5-F1-model_v2	AlphaFold	Q4QQU5	1-236	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701858

Promoter ID:

EPDNEW_R12380

Type:

multiple initiation site

Name:

Yipf6_1

Description:

Yip1 domain family, member 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	68,627,316 - 68,627,376	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566154	AgrOrtholog
BioCyc Gene	G2FUF-2157	BioCyc
Ensembl Genes	ENSRNOG00000006642	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055030947	UniProtKB/Swiss-Prot
	ENSRNOG00060020492	UniProtKB/Swiss-Prot
	ENSRNOG00065016455	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008705.8	UniProtKB/TrEMBL
	ENSRNOT00000076795	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000076795.3	UniProtKB/Swiss-Prot
	ENSRNOT00055053694	UniProtKB/Swiss-Prot
	ENSRNOT00060035488	UniProtKB/Swiss-Prot
	ENSRNOT00065027387	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7444864	IMAGE-MGC_LOAD
InterPro	Yip1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Yip1/4-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:363476	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:116126	IMAGE-MGC_LOAD
NCBI Gene	363476	ENTREZGENE
PANTHER	PROTEIN YIPF6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR21236	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Yip1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Yipf6	PhenoGen
RatGTEx	ENSRNOG00000006642	RatGTEx
	ENSRNOG00055030947	RatGTEx
	ENSRNOG00060020492	RatGTEx
	ENSRNOG00065016455	RatGTEx
UniProt	A0A096MJG6_RAT	UniProtKB/TrEMBL
	A0A8L2Q3E7	ENTREZGENE, UniProtKB/TrEMBL
	A6IQ61	ENTREZGENE, UniProtKB/TrEMBL
	Q4QQU5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Yipf6	Yip1 domain family, member 6	MGC116126	similar to RIKEN cDNA A430107J06	Symbol and Name updated	1299863	APPROVED
2006-02-09	MGC116126	similar to RIKEN cDNA A430107J06			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar