Utp14a (UTP14A small subunit processome component)

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Gene: Utp14a (UTP14A small subunit processome component) Rattus norvegicus

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Symbol:

Utp14a

Name:

UTP14A small subunit processome component

RGD ID:

1359313

Description:

Predicted to be involved in rRNA processing. Predicted to be located in cytosol. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP14A (UTP14A small subunit processome component) and UTP14C (UTP14C small subunit processome component); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC317579; similar to KIAA0266 gene product; U3 small nucleolar RNA-associated protein 14 homolog A; UTP14, U3 small nucleolar ribonucleoprotein, homolog A; UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast); UTP14A small subunit (SSU) processome component

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UTP14A (UTP14A small subunit processome component)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Utp14a (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Utp14a (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UTP14A (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UTP14A (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Utp14a (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UTP14A (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UTP14A (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Utp14a (UTP14A small subunit processome component)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UTP14C (UTP14C small subunit processome component)	HGNC	EggNOG, Ensembl, Inparanoid, OrthoDB, Panther
Homo sapiens (human):	RNF39 (ring finger protein 39)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	UTP14C (UTP14C small subunit processome component)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	UTP14A (UTP14A small subunit processome component)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Utp14a (UTP14A small subunit processome component)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-251i10.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12301	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F27C1.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UTP14	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	utp14a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	132,317,163 - 132,342,524 (+)	NCBI		GRCr8
mRatBN7.2	X	127,439,282 - 127,464,634 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	127,439,268 - 127,464,633 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	129,565,072 - 129,590,258 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	133,135,896 - 133,161,183 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	130,662,229 - 130,687,417 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	135,092,123 - 135,117,409 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	135,092,040 - 135,117,455 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	135,163,467 - 135,189,080 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	134,625,490 - 134,653,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	134,718,635 - 134,726,873 (+)	NCBI
Celera	X	126,389,666 - 126,414,950 (+)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Charcot-Marie-Tooth disease type X (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

syndromic X-linked intellectual disability Raymond type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

4-amino-2,6-dinitrotoluene (EXP)

all-trans-retinoic acid (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

chrysene (ISO)

cisplatin (ISO)

clobetasol (ISO)

coumarin (ISO)

Cuprizon (EXP)

curcumin (ISO)

cyclosporin A (ISO)

DDE (ISO)

deguelin (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

ivermectin (ISO)

nickel atom (ISO)

paracetamol (EXP)

paraquat (EXP)

potassium chromate (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

T-2 toxin (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

rRNA processing (IEA)

Cellular Component

cytosol (ISO)

nucleolus (IBA,ISO)

small-subunit processome (IBA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Utp14a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	132,317,163 - 132,342,524 (+)	NCBI		GRCr8
mRatBN7.2	X	127,439,282 - 127,464,634 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	127,439,268 - 127,464,633 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	129,565,072 - 129,590,258 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	133,135,896 - 133,161,183 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	130,662,229 - 130,687,417 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	135,092,123 - 135,117,409 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	135,092,040 - 135,117,455 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	135,163,467 - 135,189,080 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	134,625,490 - 134,653,441 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	134,718,635 - 134,726,873 (+)	NCBI
Celera	X	126,389,666 - 126,414,950 (+)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

UTP14A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	129,906,164 - 129,929,752 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	129,906,121 - 129,929,761 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	129,040,140 - 129,063,728 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	128,867,840 - 128,891,409 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	128,765,693 - 128,789,262	NCBI
Celera	X	129,426,601 - 129,450,242 (+)	NCBI		Celera
Cytogenetic Map	X	q26.1	NCBI
HuRef	X	118,440,548 - 118,464,036 (+)	NCBI		HuRef
CHM1_1	X	128,951,416 - 128,975,066 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	128,224,954 - 128,248,543 (+)	NCBI		T2T-CHM13v2.0

Utp14a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	47,345,811 - 47,371,326 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	47,345,739 - 47,371,330 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	48,256,934 - 48,282,450 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	48,256,862 - 48,282,453 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	45,610,111 - 45,635,626 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	44,501,561 - 44,527,076 (+)	NCBI		MGSCv36	mm8
Celera	X	35,759,229 - 35,784,130 (+)	NCBI		Celera
Cytogenetic Map	X	A4	NCBI
cM Map	X	25.59	NCBI

Utp14a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955473	5,100,924 - 5,125,107 (-)	NCBI	ChiLan1.0	ChiLan1.0

UTP14A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	129,325,592 - 129,350,370 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	129,328,589 - 129,353,985 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	119,032,503 - 119,056,780 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	129,330,213 - 129,353,407 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	129,330,213 - 129,353,407 (+)	Ensembl	panpan1.1		panPan2

UTP14A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	101,099,187 - 101,117,388 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	87,273,172 - 87,291,449 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	102,950,950 - 102,969,225 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	100,369,031 - 100,387,309 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	102,215,205 - 102,233,479 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	101,993,136 - 102,011,413 (+)	NCBI		UU_Cfam_GSD_1.0

Utp14a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	99,319,782 - 99,340,893 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936479	1,646,600 - 1,667,677 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UTP14A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	106,479,028 - 106,500,389 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	122,248,012 - 122,269,352 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UTP14A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	105,168,193 - 105,192,226 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	105,168,278 - 105,192,082 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	42,586,513 - 42,611,052 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Utp14a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624797	9,142,925 - 9,167,141 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Utp14a
68 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	40
Count of miRNA genes:	37
Interacting mature miRNAs:	40
Transcripts:	ENSRNOT00000048022
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat

Markers in Region

DXRat118

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	127,438,586 - 127,438,793 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	135,091,363 - 135,091,569	NCBI	Rnor6.0
Rnor_5.0	X	135,162,707 - 135,162,913	UniSTS	Rnor5.0
RGSC_v3.4	X	134,624,729 - 134,624,936	RGD	RGSC3.4
RGSC_v3.4	X	134,624,730 - 134,624,936	UniSTS	RGSC3.4
RGSC_v3.1	X	134,698,162 - 134,698,369	RGD
Celera	X	126,388,906 - 126,389,112	UniSTS
FHH x ACI Map	X	39.06	RGD
FHH x ACI Map	X	39.06	UniSTS
Cytogenetic Map	X	q35	UniSTS

RH131042

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	127,464,353 - 127,464,556 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	135,117,129 - 135,117,331	NCBI	Rnor6.0
Rnor_5.0	X	135,188,800 - 135,189,002	UniSTS	Rnor5.0
RGSC_v3.4	X	134,653,161 - 134,653,363	UniSTS	RGSC3.4
Celera	X	126,414,670 - 126,414,872	UniSTS
RH 3.4 Map	X	925.0	UniSTS
Cytogenetic Map	X	q35	UniSTS

RH133988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	127,439,770 - 127,439,987 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	135,092,547 - 135,092,763	NCBI	Rnor6.0
Rnor_5.0	X	135,163,891 - 135,164,107	UniSTS	Rnor5.0
RGSC_v3.4	X	134,625,914 - 134,626,130	UniSTS	RGSC3.4
Celera	X	126,390,090 - 126,390,306	UniSTS
RH 3.4 Map	X	923.6	UniSTS
Cytogenetic Map	X	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048022 ⟹ ENSRNOP00000051553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	127,439,268 - 127,464,633 (+)	Ensembl
Rnor_6.0 Ensembl	X	135,092,040 - 135,117,455 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096225 ⟹ ENSRNOP00000088620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	127,439,339 - 127,464,632 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106554 ⟹ ENSRNOP00000076502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	127,440,038 - 127,464,633 (+)	Ensembl

RefSeq Acc Id:

NM_001014113 ⟹ NP_001014135

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	132,317,240 - 132,342,524 (+)	NCBI
mRatBN7.2	X	127,439,347 - 127,464,634 (+)	NCBI
Rnor_6.0	X	135,092,123 - 135,117,409 (+)	NCBI
Rnor_5.0	X	135,163,467 - 135,189,080 (+)	NCBI
RGSC_v3.4	X	134,625,490 - 134,653,441 (+)	RGD
Celera	X	126,389,666 - 126,414,950 (+)	RGD

Sequence:

show sequence

CCGTTCTTGACCCATGTGAGTTACCGGCTACTAAGATGAGCGCGATCAAAGCTACGAAGGGCCT
TCTGGCTTTGAGCCAGCAGGACGATCTAATGGATTTGCCAACCAACTACCCTTTGAGTGACAGT
GAAGATGAGGCGGGCAGTGATGGAGAAAGAAAGCATCAAAAACTTCTGGAAGCAATTGGTTCCC
TTAGTGGAAAAAATAGGTGGAAATTGCCTGAGAGATCTGAAGCTGGTCTGAAAGTGTCTGAGTT
TAATGTTAGTTCTGAAGGATCTGGAGAAAAATTGGCCCTTTCAGATTTGCTTGAACCTCTTAAA
TCTTCATCCTCATTGGCTGCTGTTAAAAAGCAACTGAATAGAGTCAAATCAAAGAAGACTTTGG
AATTACCTCTTCACAAAGGAGAGGTTGAACGGGTCCACAGAGAAGTGGCCTTCAGTAACACTTC
ACAAGCCCTCTCCAAATGGGATTCTGTTGTTCAGAAGAACCGGGCAGCAGAGCAGCTGGTCTTT
CCTCTGGAGAAGGAGCCGACTTTTGTTCCCATGGAACACGTGTTTTGTGAGTGGAAGGCAAGAA
GTCCACTGGAACAGGAAATCTTTAACCTCCTCCATAAGAACAAACAGCCAGTGACAGACCCTTT
ACTGACCCCTGTGGAAAAAGCCTCCCTCAAAGCCATGAGCCTGGAAGAGGCTAAGATTCGCAGA
GCAGAGCTTCAGAGGGCCCGAGCTCTGCAGTCCTACTATGAAGCCAGGGCTCGAAGAATGAAGA
AAATCAAAAGTAAAAAATATCACAAAATTGTGAAGAAGGGAAAGGCCCAGAAGGCCCTCAAAGA
CTTTGAGCAGCTAAGGAAGGTTGATCCTGATGCTGCATTGGAAGAACTGGAAAAAATGGAAAAA
GCCAGAATGCTGGAACGAATGAGCCTTAAGCATCAAAACAGTGGGAAATGGGCCAAGTCAAAGG
CCATTATGGCAAAATATGACCTGGAGGCCCGCCAAGCTATGCAAGAACAGTTGGCTAAGAACAA
GGAACTGACACAAAAGCTGCAAGTTGTTTCAGAGAGTGAGGAAGAGAGAGATGCTGAAGAGGAA
GAAGCCCTAGTCCCTGATATAGTGAACGAAGTGCAGAAGGCTGCCCATGGACCCAATCCGTGGA
TGCTCCGGAGTTGCAATCATGATGCAAAAGAAAATGAGATCCAGGCCGATCCTGAACAACTACC
TGAGCCTGCGGCCCCCGAGTTCTCTAAAAATGAGGGAGATGAAAAACCAGTGGCAGAGGAAGGC
AAATTGTTGGAGGAGTTGGAGAAAAGGAGATCCCTTCGGAAAAGATCAGAGCTCAACCATGATG
CTGAGCCAGCGCGTGACCAAAAGCCAAAAGATTCTACCAACCAGGAGGTGTTATCTGAATTGAG
GGCATTGTCTAAGAAACTCAGTAAGGAAAACCATCCATTCGAGAAGCAAAAGGAGAGTCCAGCA
AAGACTGTTGGCCTGGTCCAGGAAGAGGAACCTGGCCCAGAGGAAGATGAGCCTCTATTGCTGC
AGAGGCCAGAGAGAGTACGAACTCTGGAGGAACTAGAAGAGCTAGGTAAAGAGTACAGTCTTCC
AAATAAGGAGCTCTCTAGACCTTCAGTAGAAGGGGAGCAGATGAGGACGAACCCACAAAATCAG
ACCAAGGGGAAAAACAAGAAGGAGCAGATGATTAGTCTACAGAACCTCCTGACTACAAGAACTC
CTTCTGTGACATCACTGGCACTTCCGACAACAGTGGAGGAGTTGGATGATGAAGTGAAGAGAAA
CCAAAAGCAAATGATAAAGGAAGCTTTTGCTGGGGATGATGTCATCAAAGAGTTCCTAAAAGAG
AAGAGAGAAGCTGTCCAGGCCAATAAGCCAAAGGACGTGGATCTGACCTTGCCTGGCTGGGGAG
AGTGGGGCGGGATGGACCTGAAGCCCAGTGCTAAGAAAAGACGCCGGTTTCTCATTAAAGCCCC
TGAAGGTCCTCCAAGAAAAGATAAGAATTTGCCCAACGTGATTATTAATGAGAAGCGTAATATC
CACATTGCAGCTCACCAGGTGCGGGTGCTTCCGTATCCATTCACCCACCATCAGCAATTTGAAA
GGACCATCCAGAATCCCATAGGGTCCACATGGATCACCCAGCGAGCATTCCAAAAGCTGACTGC
TCCCAAGGTTGTGACCAAGCCAGGCCATATTATCAAGCCCATAACAGCAGACGATGTGGGTCGC
CAATCTTCCCCAAGGTCTGACCTGTCTGTCATGCAGACCAATCCAAAACGACACTGCAAACATC
AAAAGCAACTGAAGAAAAAAGCTCTATAGGTTGAAATATCTGAGGAGTGCCCTGACTATTCTTT
TGCTTTGTCTGTGCTGCAAATTTTTTAATTCCAAAACTGGCTTAATAAACACTGTACTTCAGCC
ATATCTTAGAAATAAATGCCTTTTTTGTTTACCTTTAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039099849 ⟹ XP_038955777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	132,333,505 - 132,342,524 (+)	NCBI
mRatBN7.2	X	127,455,597 - 127,464,609 (+)	NCBI

RefSeq Acc Id:

XM_039099850 ⟹ XP_038955778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	132,317,163 - 132,338,683 (+)	NCBI
mRatBN7.2	X	127,439,282 - 127,460,846 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014135	(Get FASTA)	NCBI Sequence Viewer
	XP_038955777	(Get FASTA)	NCBI Sequence Viewer
	XP_038955778	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88326	(Get FASTA)	NCBI Sequence Viewer
	AAH99799	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051553.5
	ENSRNOP00000076502.1
	ENSRNOP00000088620.1

RefSeq Acc Id:

NP_001014135 ⟸ NM_001014113

- UniProtKB:

Q499R2 (UniProtKB/TrEMBL), A0A8I5ZJ69 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAIKATKGLLALSQQDDLMDLPTNYPLSDSEDEAGSDGERKHQKLLEAIGSLSGKNRWKLPER
SEAGLKVSEFNVSSEGSGEKLALSDLLEPLKSSSSLAAVKKQLNRVKSKKTLELPLHKGEVERV
HREVAFSNTSQALSKWDSVVQKNRAAEQLVFPLEKEPTFVPMEHVFCEWKARSPLEQEIFNLLH
KNKQPVTDPLLTPVEKASLKAMSLEEAKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVK
KGKAQKALKDFEQLRKVDPDAALEELEKMEKARMLERMSLKHQNSGKWAKSKAIMAKYDLEARQ
AMQEQLAKNKELTQKLQVVSESEEERDAEEEEALVPDIVNEVQKAAHGPNPWMLRSCNHDAKEN
EIQADPEQLPEPAAPEFSKNEGDEKPVAEEGKLLEELEKRRSLRKRSELNHDAEPARDQKPKDS
TNQEVLSELRALSKKLSKENHPFEKQKESPAKTVGLVQEEEPGPEEDEPLLLQRPERVRTLEEL
EELGKEYSLPNKELSRPSVEGEQMRTNPQNQTKGKNKKEQMISLQNLLTTRTPSVTSLALPTTV
EELDDEVKRNQKQMIKEAFAGDDVIKEFLKEKREAVQANKPKDVDLTLPGWGEWGGMDLKPSAK
KRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHIAAHQVRVLPYPFTHHQQFERTIQNPIGSTWI
TQRAFQKLTAPKVVTKPGHIIKPITADDVGRQSSPRSDLSVMQTNPKRHCKHQKQLKKKAL

hide sequence

Ensembl Acc Id:

ENSRNOP00000051553 ⟸ ENSRNOT00000048022

RefSeq Acc Id:	XP_038955778 ⟸ XM_039099850
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038955777 ⟸ XM_039099849
- Peptide Label:	isoform X2
- UniProtKB:	A6JMP9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088620 ⟸ ENSRNOT00000096225

Ensembl Acc Id:

ENSRNOP00000076502 ⟸ ENSRNOT00000106554

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZY2-F1-model_v2	AlphaFold	D3ZZY2	1-803	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13702011

Promoter ID:

EPDNEW_R12535

Type:

initiation region

Name:

Utp14a_1

Description:

UTP14A small subunit processome component

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	135,092,112 - 135,092,172	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359313	AgrOrtholog
BioCyc Gene	G2FUF-1135	BioCyc
Ensembl Genes	ENSRNOG00000005012	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000048022.6	UniProtKB/TrEMBL
	ENSRNOT00000096225.1	UniProtKB/TrEMBL
	ENSRNOT00000106554.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7365084	IMAGE-MGC_LOAD
	IMAGE:7936638	IMAGE-MGC_LOAD
InterPro	SSU_processome_Utp14	UniProtKB/TrEMBL
KEGG Report	rno:317579	UniProtKB/TrEMBL
MGC_CLONE	MGC:109573	IMAGE-MGC_LOAD
	MGC:124850	IMAGE-MGC_LOAD
NCBI Gene	317579	ENTREZGENE
PANTHER	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG A	UniProtKB/TrEMBL
	Utp14	UniProtKB/TrEMBL
Pfam	Utp14	UniProtKB/TrEMBL
PhenoGen	Utp14a	PhenoGen
RatGTEx	ENSRNOG00000005012	RatGTEx
UniProt	A0A8I5ZJ69	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJ81_RAT	UniProtKB/TrEMBL
	A6JMP9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZY2_RAT	UniProtKB/TrEMBL
	Q499R2	ENTREZGENE, UniProtKB/TrEMBL
	Q5M811_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Utp14a	UTP14A small subunit processome component	Utp14a	UTP14A small subunit (SSU) processome component	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-10-28	Utp14a	UTP14A small subunit (SSU) processome component	Utp14a	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Utp14a	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	LOC317579	similar to KIAA0266 gene product	Symbol and Name updated	1299863	APPROVED
2005-07-29	LOC317579	similar to KIAA0266 gene product			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)