Rnf113a1 (ring finger protein 113A1)

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Gene: Rnf113a1 (ring finger protein 113A1) Rattus norvegicus

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Symbol:

Rnf113a1

Name:

ring finger protein 113A1

RGD ID:

1359693

Description:

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in RNA splicing; negative regulation of chemokine-mediated signaling pathway; and protein ubiquitination. Predicted to be located in nucleoplasm. Predicted to be part of U2-type precatalytic spliceosome. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Orthologous to human RNF113A (ring finger protein 113A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; chlormequat chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase RNF113A; LOC108348079; LOC313450; RING finger protein 113A; RING finger protein 113A-like; Rnf113a; similar to RIKEN cDNA 2810428C21; zinc finger protein 183

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF113A (ring finger protein 113A)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rnf113a1 (ring finger protein 113A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf113a (ring finger protein 113A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF113A (ring finger protein 113A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF113A (ring finger protein 113A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf113a (ring finger protein 113A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF113A (ring finger protein 113A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF113A (ring finger protein 113A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf113a (ring finger protein 113A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RNF113B (ring finger protein 113B)	HGNC	Panther
Alliance orthologs ³
Homo sapiens (human):	RNF113A (ring finger protein 113A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Rnf113a1 (ring finger protein 113A1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf113a (ring finger protein 113A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CWC24	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mdlc	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rnf-113	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf113a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	121,293,621 - 121,294,844 (+)	NCBI		GRCr8
mRatBN7.2	X	116,427,941 - 116,429,164 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	116,427,684 - 116,433,762 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	123,806,922 - 123,808,049 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	123,806,918 - 123,808,049 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	X	124,516,949 - 124,518,077 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	124,602,718 - 124,603,845 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	7,725,172 - 7,726,299 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	7,730,730 - 7,731,855 (-)	NCBI
Celera	X	115,655,511 - 115,656,638 (+)	NCBI		Celera
Cytogenetic Map	X	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Danon disease (ISO)

NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, ARTHROGRYPOSIS, AND STRUCTURAL BRAIN ANOMALIES (ISO)

nonphotosensitive trichothiodystrophy 5 (ISO)

syndromic X-linked intellectual disability 14 (ISO)

syndromic X-linked intellectual disability Cabezas type (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-colchicine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

adenine (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

caffeine (ISO)

chlormequat chloride (EXP)

cisplatin (ISO)

cobalt dichloride (EXP)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diuron (ISO)

ethyl methanesulfonate (ISO)

etoposide (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydroxyurea (ISO)

lead(0) (ISO)

methamphetamine (EXP)

methyl methanesulfonate (ISO)

mitomycin C (ISO)

nickel dichloride (EXP)

nitrofen (EXP)

ochratoxin A (EXP)

paracetamol (EXP)

pentachlorophenol (ISO)

perfluorooctanoic acid (EXP)

quercetin (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (ISO)

negative regulation of chemokine-mediated signaling pathway (ISO)

protein ubiquitination (ISO)

snoRNA splicing (IBA)

Cellular Component

nucleoplasm (ISO)

nucleus (ISO)

U2-type precatalytic spliceosome (ISO)

U2-type spliceosomal complex (IBA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

ubiquitin protein ligase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:28978524	PMID:29360106

Genomics

Comparative Map Data

Rnf113a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	121,293,621 - 121,294,844 (+)	NCBI		GRCr8
mRatBN7.2	X	116,427,941 - 116,429,164 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	116,427,684 - 116,433,762 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	123,806,922 - 123,808,049 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	123,806,918 - 123,808,049 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	X	124,516,949 - 124,518,077 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	124,602,718 - 124,603,845 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	7,725,172 - 7,726,299 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	7,730,730 - 7,731,855 (-)	NCBI
Celera	X	115,655,511 - 115,656,638 (+)	NCBI		Celera
Cytogenetic Map	X	q35	NCBI

RNF113A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	119,870,475 - 119,871,733 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	119,870,475 - 119,871,733 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	119,004,438 - 119,005,696 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	118,888,466 - 118,889,818 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	118,786,319 - 118,787,672	NCBI
Celera	X	119,459,140 - 119,460,436 (-)	NCBI		Celera
Cytogenetic Map	X	q24	NCBI
HuRef	X	108,497,612 - 108,498,908 (-)	NCBI		HuRef
CHM1_1	X	118,915,570 - 118,916,866 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	118,245,597 - 118,246,855 (-)	NCBI		T2T-CHM13v2.0

Rnf113a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	36,454,875 - 36,456,120 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	36,454,898 - 36,456,120 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	37,191,222 - 37,192,467 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	37,191,245 - 37,192,467 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	34,731,338 - 34,732,462 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	33,622,788 - 33,623,912 (+)	NCBI		MGSCv36	mm8
Celera	X	23,914,653 - 23,915,777 (+)	NCBI		Celera
Cytogenetic Map	X	A3.3	NCBI
cM Map	X	21.61	NCBI

Rnf113a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955534	154,380 - 155,417 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955534	154,242 - 155,474 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNF113A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	119,278,356 - 119,279,437 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	119,281,956 - 119,283,049 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	108,934,081 - 108,935,376 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	119,328,861 - 119,330,150 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	119,328,911 - 119,329,942 (-)	Ensembl	panpan1.1		panPan2

RNF113A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	91,884,757 - 91,885,998 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	91,884,808 - 91,885,854 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	77,959,142 - 77,960,381 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	93,623,633 - 93,624,872 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	93,623,684 - 93,624,730 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	91,076,239 - 91,077,478 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	92,835,657 - 92,836,896 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	92,564,609 - 92,565,848 (-)	NCBI		UU_Cfam_GSD_1.0

Rnf113a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	90,908,095 - 90,909,340 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	10,078,304 - 10,079,338 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	10,078,201 - 10,079,400 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF113A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	98,218,565 - 98,219,773 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	98,218,689 - 98,219,931 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	113,392,111 - 113,393,355 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF113A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	32,665,051 - 32,666,343 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf113a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624895	3,812,423 - 3,813,466 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624895	3,812,369 - 3,813,657 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rnf113a1
1 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	103
Count of miRNA genes:	89
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000051474
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
5685004	Bss104	Bone structure and strength QTL 104	3.9		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	X	113805422	126975220	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
724551	Glom1	Glomerulus QTL 1	2.8	0.0004	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	X	75294106	120294106	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
3	5	13	9	12	1	15	1	33	19	11	7	7	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY363108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000051474 ⟹ ENSRNOP00000047839

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	124,516,949 - 124,518,077 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082045 ⟹ ENSRNOP00000074691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	116,427,684 - 116,433,762 (+)	Ensembl
Rnor_6.0 Ensembl	X	123,806,918 - 123,808,049 (+)	Ensembl

RefSeq Acc Id:

NM_001014791 ⟹ NP_001014791

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,293,621 - 121,294,844 (+)	NCBI
mRatBN7.2	X	116,427,941 - 116,429,164 (+)	NCBI
Rnor_6.0	X	123,806,922 - 123,808,049 (+)	NCBI
Rnor_5.0	X	124,602,718 - 124,603,845 (+)	NCBI
RGSC_v3.4	X	7,725,172 - 7,726,299 (-)	RGD
Celera	X	115,655,511 - 115,656,638 (+)	RGD

Sequence:

show sequence

CGACCGGAAGCGGTCCCGTAGGTCACAGCAGTTTCAGAACTTGGGGATCTCTAATGGCGGAGCA
ACTTTCTCCAGGGAATTCTACCGGTAAGGTGTGCACTTTTCTCTTCAAAAAGCCTGGCCGGAAA
GGAACGGCTGGCCGCCGAAAGCGCCCGCTCTGTGATGAGGGGTCCGGGGACAGCGGCAGCAGCA
GTGACGAAGGCAGCGCTGTGGTCCGCCCCGAGAAGAAGCAGGCTACCCACAACCCGATGATACA
GAAGACGCGTGGCAGCGCTAAACAGAAGACAAACTACGGCGGTTTGAGTAGTGAGGATGAGAAT
GAACCTGAGGGTCTTGGCGTGACCTACAAGTCTACCCGTTCAGCAAAACCCGTAGGGCCCGAAG
ATATGGGGGCGACCGCTGTCTATGAACTGGACACTGAGAAGGAACGAGATGCACAGTCCATCTT
TGAGCGGAGCCAGAAGATCCAGGAGGAGCTGAGGGGCAAGGAAGATGACAAGATCTATCGGGGA
ATCAATAATTATCAGAAATACGTGAAGCCCAAGGATACATCTATGGGCAATGCTTCCTCCGGGA
TGGTGAGGAAAGGCCCCATCCGAGCCCCTGAGCATCTACGTGCCACCGTGCGCTGGGATTACCA
GCCCGACATCTGCAAGGACTACAAGGAGACTGGATTCTGCGGCTTCGGGGACAGCTGCAAATTC
CTTCATGACCGTTCAGATTACAAGCACGGGTGGCAGATCGAACGTGAGCTTGATGAGGGTCGCT
ATGGCGTCTATGAGGATGAAAACTATGAAGTGGGAAGCGATGATGAGGAAATACCATTCAAATG
TTTCATCTGTCGCCAGACCTTCCAAAATCCAGTTGTTACCAAGTGTAGGCATTATTTCTGCGAG
AGCTGTGCACTGCAGCATTTCCGCACCACCTCGCGCTGCTATGTCTGTGACCAGCAGACCAATG
GCGTTTTCAATCCAGCGAAAGAATTGATTGCTAAACTTGGAAAGCATCGAGCTGAAGCAGAGGG
TGCTGCCTCTGATTTCCTAGAAGACCCAGAGGAGAGTCCAGTTTCCATTATTTAGATTTTCCGT
AATCCCCAGCCTTAAAATAAATATTTTGTTGTTTCTTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014791	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87595	(Get FASTA)	NCBI Sequence Viewer
	AAR97521	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074691.1

RefSeq Acc Id:

NP_001014791 ⟸ NM_001014791

- UniProtKB:

Q5PPN1 (UniProtKB/TrEMBL), Q67ER2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEQLSPGNSTGKVCTFLFKKPGRKGTAGRRKRPLCDEGSGDSGSSSDEGSAVVRPEKKQATHN
PMIQKTRGSAKQKTNYGGLSSEDENEPEGLGVTYKSTRSAKPVGPEDMGATAVYELDTEKERDA
QSIFERSQKIQEELRGKEDDKIYRGINNYQKYVKPKDTSMGNASSGMVRKGPIRAPEHLRATVR
WDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDDEEI
PFKCFICRQTFQNPVVTKCRHYFCESCALQHFRTTSRCYVCDQQTNGVFNPAKELIAKLGKHRA
EAEGAASDFLEDPEESPVSII

hide sequence

Ensembl Acc Id:

ENSRNOP00000047839 ⟸ ENSRNOT00000051474

Ensembl Acc Id:

ENSRNOP00000074691 ⟸ ENSRNOT00000082045

Protein Domains

C3H1-type RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PPN1-F1-model_v2	AlphaFold	Q5PPN1	1-341	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359693	AgrOrtholog
BioCyc Gene	G2FUF-1292	BioCyc
Ensembl Genes	ENSRNOG00000034040	Ensembl
	ENSRNOG00000059412	Ensembl
	ENSRNOG00000066548	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000082045.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7310345	IMAGE-MGC_LOAD
InterPro	CWC24-like	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:313450	UniProtKB/TrEMBL
MGC_CLONE	MGC:105705	IMAGE-MGC_LOAD
NCBI Gene	313450	ENTREZGENE
PANTHER	PTHR12930	UniProtKB/TrEMBL
	RING FINGER PROTEIN 113A1	UniProtKB/TrEMBL
Pfam	zf-C3HC4_3	UniProtKB/TrEMBL
	zf-CCCH	UniProtKB/TrEMBL
PhenoGen	Rnf113a1	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000034040	RatGTEx
	ENSRNOG00000059412	RatGTEx
	ENSRNOG00000066548	RatGTEx
SMART	RING	UniProtKB/TrEMBL
	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF90229	UniProtKB/TrEMBL
UniProt	Q5PPN1	ENTREZGENE, UniProtKB/TrEMBL
	Q67ER2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Rnf113a1	ring finger protein 113A1	LOC108348079	RING finger protein 113A-like	Data merged from RGD:11447433	737654	PROVISIONAL
2016-08-02	LOC108348079	RING finger protein 113A-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-05	Rnf113a1	ring finger protein 113A1	LOC313450	similar to RIKEN cDNA 2810428C21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC313450	similar to RIKEN cDNA 2810428C21			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM