Eda (ectodysplasin-A) - Rat Genome Database

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Gene: Eda (ectodysplasin-A) Rattus norvegicus
Analyze
Symbol: Eda
Name: ectodysplasin-A
RGD ID: 1563178
Description: Predicted to enable death receptor agonist activity and death receptor binding activity. Predicted to be involved in several processes, including cytokine-mediated signaling pathway; positive regulation of NF-kappaB transcription factor activity; and regulation of NIK/NF-kappaB signaling. Predicted to act upstream of or within several processes, including hair follicle placode formation; positive regulation of signal transduction; and trachea gland development. Predicted to be located in apical part of cell; endoplasmic reticulum membrane; and lipid droplet. Predicted to be integral component of plasma membrane. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in ectodermal dysplasia 1 and tooth agenesis. Orthologous to human EDA (ectodysplasin A); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC302424; RGD1563178; similar to ectodysplasin-A isoform Ta A; Tnlg7c; tumor necrosis factor ligand 7c
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X65,078,454 - 65,480,172 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX65,078,673 - 65,480,172 (+)Ensembl
Rnor_6.0X69,730,123 - 70,222,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX69,730,242 - 70,220,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X70,602,479 - 71,095,806 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X87,982,303 - 88,390,680 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX65,441,737 - 65,840,991 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:544312   PMID:4561716   PMID:5893447   PMID:10534613   PMID:10610025   PMID:11039935   PMID:12629675   PMID:15973734   PMID:17673451   PMID:18508042   PMID:18689798   PMID:19619491  
PMID:26646413   PMID:27144394  


Genomics

Comparative Map Data
Eda
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X65,078,454 - 65,480,172 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX65,078,673 - 65,480,172 (+)Ensembl
Rnor_6.0X69,730,123 - 70,222,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX69,730,242 - 70,220,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X70,602,479 - 71,095,806 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X87,982,303 - 88,390,680 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX65,441,737 - 65,840,991 (+)NCBICelera
Cytogenetic MapXq22NCBI
EDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X69,616,113 - 70,039,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX69,616,067 - 70,039,472 (+)EnsemblGRCh38hg38GRCh38
GRCh37X68,835,957 - 69,259,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X68,752,636 - 69,176,047 (+)NCBINCBI36hg18NCBI36
Build 34X68,618,931 - 69,042,340NCBI
CeleraX69,189,229 - 69,612,705 (+)NCBI
Cytogenetic MapXq13.1NCBI
HuRefX62,655,756 - 63,080,124 (+)NCBIHuRef
CHM1_1X68,729,282 - 69,152,930 (+)NCBICHM1_1
Eda
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,019,212 - 99,444,366 (+)NCBIGRCm39mm39
GRCm39 EnsemblX99,019,212 - 99,444,368 (+)Ensembl
GRCm38X99,975,606 - 100,400,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX99,975,606 - 100,400,762 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X97,170,945 - 97,596,099 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X82,816,290 - 83,239,228 (+)NCBImm8
MGSCv36X96,178,325 - 96,603,479 (+)NCBImm8
CeleraX86,912,424 - 87,326,326 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.59NCBI
Eda
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554759,178,234 - 9,588,440 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554759,177,911 - 9,592,150 (+)NCBIChiLan1.0ChiLan1.0
EDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X68,946,036 - 69,371,175 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X58,881,660 - 59,308,451 (+)NCBIMhudiblu_PPA_v0panPan3
EDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X54,078,694 - 54,515,535 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX54,078,966 - 54,515,535 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX44,906,268 - 45,341,896 (+)NCBI
ROS_Cfam_1.0X55,046,702 - 55,482,183 (+)NCBI
ROS_Cfam_1.0 EnsemblX55,046,981 - 55,482,183 (+)Ensembl
UMICH_Zoey_3.1X53,014,333 - 53,451,228 (+)NCBI
UNSW_CanFamBas_1.0X54,343,122 - 54,782,021 (+)NCBI
UU_Cfam_GSD_1.0X54,267,090 - 54,709,181 (+)NCBI
Eda
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X47,673,194 - 47,996,323 (-)NCBI
SpeTri2.0NW_0049367771,545,293 - 1,561,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX55,771,240 - 56,103,265 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X55,770,958 - 56,103,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X62,968,935 - 63,300,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EDA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X59,453,157 - 59,861,555 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660651,311,650 - 1,730,565 (+)NCBIVero_WHO_p1.0
Eda
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462489155,310 - 489,072 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
DXGot192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X65,100,822 - 65,101,007 (+)MAPPERmRatBN7.2
Rnor_6.0X69,752,473 - 69,752,657NCBIRnor6.0
Rnor_5.0X70,624,818 - 70,625,002UniSTSRnor5.0
RGSC_v3.4X88,004,431 - 88,004,615UniSTSRGSC3.4
CeleraX65,463,606 - 65,463,790UniSTS
Cytogenetic MapXq31UniSTS
AU049644  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X65,395,966 - 65,396,248 (+)MAPPERmRatBN7.2
Rnor_6.0X70,140,273 - 70,140,554NCBIRnor6.0
Rnor_5.0X71,012,668 - 71,012,949UniSTSRnor5.0
RGSC_v3.4X88,309,323 - 88,309,604UniSTSRGSC3.4
CeleraX65,757,132 - 65,757,416UniSTS
Cytogenetic MapXq31UniSTS
PMC24264P3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X65,386,875 - 65,386,987 (+)MAPPERmRatBN7.2
Rnor_6.0X70,131,313 - 70,131,424NCBIRnor6.0
Rnor_5.0X71,003,708 - 71,003,819UniSTSRnor5.0
RGSC_v3.4X88,299,881 - 88,299,992UniSTSRGSC3.4
CeleraX65,748,055 - 65,748,166UniSTS
Cytogenetic MapXq31UniSTS
PMC24264P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X65,476,374 - 65,476,520 (+)MAPPERmRatBN7.2
Rnor_6.0X70,218,896 - 70,219,041NCBIRnor6.0
Rnor_5.0X71,092,009 - 71,092,154UniSTSRnor5.0
RGSC_v3.4X88,390,066 - 88,390,211UniSTSRGSC3.4
CeleraX65,837,194 - 65,837,339UniSTS
Cytogenetic MapXq31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X5704214165612192Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:110
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000004505
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 43 16 4 9 4 8 10 74 29 38 11 8
Below cutoff 3 41 37 10 37 1 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000075980   ⟹   ENSRNOP00000067997
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX65,078,673 - 65,480,172 (+)Ensembl
Rnor_6.0 EnsemblX69,730,242 - 70,220,329 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076425   ⟹   ENSRNOP00000067898
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX65,078,673 - 65,480,172 (+)Ensembl
Rnor_6.0 EnsemblX69,730,370 - 70,219,513 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX69,730,242 - 70,132,510 (+)Ensembl
RefSeq Acc Id: NM_001305243   ⟹   NP_001292172
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X65,078,693 - 65,480,172 (+)NCBI
Rnor_6.0X69,730,242 - 70,222,693 (+)NCBI
CeleraX65,441,737 - 65,840,991 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006257111   ⟹   XP_006257173
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X65,078,469 - 65,480,172 (+)NCBI
Rnor_6.0X69,730,123 - 70,222,693 (+)NCBI
Rnor_5.0X70,602,479 - 71,095,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006257112   ⟹   XP_006257174
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X65,078,464 - 65,480,172 (+)NCBI
Rnor_6.0X69,730,123 - 70,222,693 (+)NCBI
Rnor_5.0X70,602,479 - 71,095,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773301   ⟹   XP_008771523
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X65,078,464 - 65,480,172 (+)NCBI
Rnor_6.0X69,730,123 - 70,222,693 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099598   ⟹   XP_038955526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X65,078,454 - 65,476,344 (+)NCBI
RefSeq Acc Id: XM_228582   ⟹   XP_228582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X65,078,464 - 65,480,172 (+)NCBI
Rnor_6.0X69,730,123 - 70,222,693 (+)NCBI
Rnor_5.0X70,602,479 - 71,095,806 (+)NCBI
RGSC_v3.4X87,982,303 - 88,390,680 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: XP_228582   ⟸   XM_228582
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006257174   ⟸   XM_006257112
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006257173   ⟸   XM_006257111
- Peptide Label: isoform X1
- UniProtKB: A0A0U5J6T2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771523   ⟸   XM_008773301
- Peptide Label: isoform X4
- UniProtKB: A0A096MIW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001292172   ⟸   NM_001305243
- Sequence:
RefSeq Acc Id: ENSRNOP00000067997   ⟸   ENSRNOT00000075980
RefSeq Acc Id: ENSRNOP00000067898   ⟸   ENSRNOT00000076425
RefSeq Acc Id: XP_038955526   ⟸   XM_039099598
- Peptide Label: isoform X5
Protein Domains
TNF_2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJ56-F1-model_v2 AlphaFold A0A096MJ56 1-378 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701866
Promoter ID:EPDNEW_R12386
Type:single initiation site
Name:Eda_1
Description:ectodysplasin-A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X69,730,231 - 69,730,291EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563178 AgrOrtholog
BioCyc Gene G2FUF-2141 BioCyc
Ensembl Genes ENSRNOG00000032208 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000067898 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000067997 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075980 UniProtKB/TrEMBL
  ENSRNOT00000076425 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro TNF_family UniProtKB/TrEMBL
  Tumour_necrosis_fac-like UniProtKB/TrEMBL
NCBI Gene 302424 ENTREZGENE
Pfam TNF UniProtKB/TrEMBL
PhenoGen Eda PhenoGen
PROSITE TNF_2 UniProtKB/TrEMBL
Superfamily-SCOP TNF_like UniProtKB/TrEMBL
UniProt A0A096MIW0 ENTREZGENE, UniProtKB/TrEMBL
  A0A096MJ56_RAT UniProtKB/TrEMBL
  A0A0U5J6T2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Eda  ectodysplasin-A  RGD1563178_predicted  similar to ectodysplasin-A isoform Ta A (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563178_predicted  similar to ectodysplasin-A isoform Ta A (predicted)  LOC302424  similar to ectodysplasin-A isoform Ta A  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302424  similar to ectodysplasin-A isoform Ta A      Symbol and Name status set to provisional 70820 PROVISIONAL