2010106E10Rikl (RIKEN cDNA 2010106E10 gene like) - Rat Genome Database

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Gene: 2010106E10Rikl (RIKEN cDNA 2010106E10 gene like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: 2010106E10Rikl (Ensembl: RGD1561958)
Name: RIKEN cDNA 2010106E10 gene like (Ensembl:similar to RIKEN cDNA 2010106E10)
RGD ID: 1561958
Description: INTERACTS WITH trichloroethene
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC363490; LOC363490; RGD1561958; similar to RIKEN cDNA 2010106E10; uncharacterized protein LOC363490
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X81,725,570 - 81,789,385 (+)NCBIGRCr8
mRatBN7.2X77,533,344 - 77,597,156 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX77,533,339 - 77,597,166 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX79,190,667 - 79,254,547 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X82,621,664 - 82,685,102 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X80,209,802 - 80,273,589 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X83,926,486 - 84,014,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX83,926,513 - 84,014,691 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X83,877,007 - 83,963,814 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X101,069,460 - 101,133,073 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX78,833,604 - 78,897,304 (+)NCBICelera
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in 2010106E10Rikl
204 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:295
Count of miRNA genes:174
Interacting mature miRNAs:194
Transcripts:ENSRNOT00000035274
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2
Low 1 2
Below cutoff 32 25 12 7 12 6 8 44 18 32 9 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000035274   ⟹   ENSRNOP00000034222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX77,533,339 - 77,597,166 (+)Ensembl
Rnor_6.0 EnsemblX83,926,513 - 84,014,691 (+)Ensembl
RefSeq Acc Id: NM_001395116   ⟹   NP_001382045
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,725,570 - 81,789,385 (+)NCBI
mRatBN7.2X77,533,344 - 77,597,156 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001382045 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM07079 (Get FASTA)   NCBI Sequence Viewer  
  EDM07080 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000034222.5
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000034222   ⟸   ENSRNOT00000035274
RefSeq Acc Id: NP_001382045   ⟸   NM_001395116
- Peptide Label: precursor
- UniProtKB: A6IVA0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZP86-F1-model_v2 AlphaFold D3ZP86 1-210 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701915
Promoter ID:EPDNEW_R12439
Type:single initiation site
Name:RGD1561958_1
Description:similar to RIKEN cDNA 2010106E10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X83,926,514 - 83,926,574EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561958 AgrOrtholog
BioCyc Gene G2FUF-1832 BioCyc
Ensembl Genes ENSRNOG00000022411 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035274.6 UniProtKB/TrEMBL
KEGG Report rno:363490 UniProtKB/TrEMBL
NCBI Gene 363490 ENTREZGENE
PhenoGen 2010106E10Rikl PhenoGen
RatGTEx ENSRNOG00000022411 RatGTEx
UniProt A6IVA0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZP86_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 2010106E10Rikl  RIKEN cDNA 2010106E10 gene like  RGD1561958  similar to RIKEN cDNA 2010106E10  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561958  similar to RIKEN cDNA 2010106E10   RGD1561958_predicted  similar to RIKEN cDNA 2010106E10 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561958_predicted  similar to RIKEN cDNA 2010106E10 (predicted)  LOC363490  similar to RIKEN cDNA 2010106E10  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363490  similar to RIKEN cDNA 2010106E10      Symbol and Name status set to provisional 70820 PROVISIONAL