Ptp4a1l1 (protein tyrosine phosphatase 4A1 like 1) - Rat Genome Database

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Gene: Ptp4a1l1 (protein tyrosine phosphatase 4A1 like 1) Rattus norvegicus
Analyze
Symbol: Ptp4a1l1 (Ensembl: RGD1566035)
Name: protein tyrosine phosphatase 4A1 like 1 (Ensembl:similar to protein tyrosine phosphatase 4a1)
RGD ID: 1566035
Description: Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in dephosphorylation. Predicted to be located in cytoplasm and nucleus; INTERACTS WITH 17beta-estradiol; bisphenol A; rotenone.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC363438; RGD1566035; similar to protein tyrosine phosphatase 4a1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X121,655,427 - 121,720,602 (+)NCBIGRCr8
mRatBN7.2X116,789,584 - 116,790,544 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX116,789,935 - 116,790,456 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X124,147,363 - 124,148,229 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X124,233,554 - 124,234,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X7,330,339 - 7,330,860 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX116,010,502 - 116,011,368 (+)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in Ptp4a1l1
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:90
Interacting mature miRNAs:95
Transcripts:ENSRNOT00000073218
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000041969   ⟹   ENSRNOP00000097205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,789,935 - 116,790,456 (+)Ensembl
Rnor_6.0 EnsemblX124,147,367 - 124,147,888 (+)Ensembl
RefSeq Acc Id: XR_010061338
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,655,427 - 121,720,602 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000097205.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000097205   ⟸   ENSRNOT00000041969
Protein Domains
Tyrosine specific protein phosphatases

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1273 BioCyc
Ensembl Genes ENSRNOG00000030645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041969.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
InterPro Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTP_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
NCBI Gene 363438 ENTREZGENE
PANTHER PROTEIN TYROSINE PHOSPHATASE TYPE IVA 1 UniProtKB/TrEMBL
  TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam Y_phosphatase UniProtKB/TrEMBL
PhenoGen Ptp4a1l1 PhenoGen
PROSITE TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030645 RatGTEx
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A8I6B5G4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Ptp4a1l1  protein tyrosine phosphatase 4A1 like 1  RGD1566035  similar to protein tyrosine phosphatase 4a1  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1566035  similar to protein tyrosine phosphatase 4a1   RGD1566035_predicted  similar to protein tyrosine phosphatase 4a1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566035_predicted  similar to protein tyrosine phosphatase 4a1 (predicted)  LOC363438  similar to protein tyrosine phosphatase 4a1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363438  similar to protein tyrosine phosphatase 4a1      Symbol and Name status set to provisional 70820 PROVISIONAL