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ONTOLOGY REPORT - ANNOTATIONS

Term:stem cell differentiation
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Accession:GO:0048863 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
Synonyms:xref: Wikipedia:Stem_cell_differentiation
 never_in_taxon: NCBITaxon:4751 ! Fungi


show annotations for term's descendants           Sort by:
stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A2m alpha-2-macroglobulin acts_upstream_of_or_within ISO (PMID:19796622) RGD PMID:19796622 NCBI chr 4:156,570,163...156,619,870
Ensembl chr 4:154,897,877...154,947,786 		JBrowse link
G Bbs12 Bardet-Biedl syndrome 12 acts_upstream_of ISO MGI:5444297 (PMID:22958920) RGD PMID:22958920 NCBI chr 2:122,131,550...122,149,152
Ensembl chr 2:120,203,428...120,219,255 		JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEP dental pulp stem cells RGD PMID:19840645 RGD:2316145 NCBI chr 2:176,136,341...176,137,318
Ensembl chr 2:173,838,518...173,839,495 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO
IEA		 (PMID:23993924)
GO_REF:0000107		 RGD
Ensembl		 PMID:23993924 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO MGI:1857928 (PMID:20404091) RGD PMID:20404091 NCBI chr12:12,762,769...12,769,246
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within ISO (PMID:21576465) RGD PMID:21576465 NCBI chr 5:130,034,473...130,040,283
Ensembl chr 5:124,805,883...124,811,630 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:24074865)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24074865 GO_REF:0000024 GO_REF:0000107 NCBI chr20:10,614,591...10,628,989
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000107		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:128,866,755...128,870,896
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Epcam epithelial cell adhesion molecule involved_in ISO
IEA		 (PMID:19785009)
GO_REF:0000107		 RGD
Ensembl		 PMID:19785009 GO_REF:0000107 NCBI chr 6:6,880,142...6,896,103
Ensembl chr 6:6,878,237...6,896,127 		JBrowse link
G Epop elongin BC and polycomb repressive complex 2 associated protein involved_in ISO (PMID:27863225), (PMID:27863226) RGD PMID:27863225 PMID:27863226 NCBI chr10:83,120,767...83,122,287
Ensembl chr10:82,624,392...82,625,912 		JBrowse link
G Esr1 estrogen receptor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25655704)		 Ensembl
RGD		 PMID:25655704 GO_REF:0000107 NCBI chr 1:43,511,685...43,904,454
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Etv4 ETS variant transcription factor 4 acts_upstream_of_or_within ISO MGI:2445834 (PMID:18977342) RGD PMID:18977342 NCBI chr10:87,206,977...87,222,202
Ensembl chr10:86,706,749...86,721,974 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of ISO MGI:2661097 (PMID:19303854) RGD PMID:19303854 NCBI chr 4:77,624,223...77,698,598
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of ISO (PMID:15781473) RGD PMID:15781473 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:95523 (PMID:16442091) RGD PMID:16442091 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:95522 (PMID:16442091) RGD PMID:16442091 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxo4 forkhead box O4 involved_in ISO (PMID:22972301) RGD PMID:22972301 NCBI chr  X:70,425,218...70,432,120
Ensembl chr  X:66,385,558...66,392,115 		JBrowse link
G Gak cyclin G associated kinase acts_upstream_of_or_within ISO MGI:2445832|MGI:5305733 (PMID:18434600) RGD PMID:18434600 NCBI chr14:1,234,272...1,308,492
Ensembl chr14:1,089,866...1,216,398 		JBrowse link
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3793425|MGI:95664 (PMID:18400219)		 Ensembl
RGD		 PMID:18400219 GO_REF:0000107 NCBI chr18:2,460,909...2,492,322
Ensembl chr18:2,188,121...2,219,532 		JBrowse link
G Gpm6a glycoprotein m6a involved_in ISO
ISS		 (PMID:19298174)
GO_REF:0000024		 RGD
UniProt		 PMID:19298174 GO_REF:0000024 NCBI chr16:43,374,385...43,706,461
Ensembl chr16:36,641,284...36,973,475 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta acts_upstream_of ISO (PMID:22064483) RGD PMID:22064483 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO (PMID:31761678) RGD PMID:31761678 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,191,852...2,193,957 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17078040) RGD PMID:17078040 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hoxa7 homeobox A7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:19796622)		 Ensembl
RGD		 PMID:19796622 GO_REF:0000107 NCBI chr 4:82,646,342...82,652,449
Ensembl chr 4:81,314,625...81,317,659 		JBrowse link
G Hoxd4 homeo box D4 acts_upstream_of_or_within ISO (PMID:19796622) RGD PMID:19796622 NCBI chr 3:80,021,886...80,041,462
Ensembl chr 3:59,614,464...59,631,528 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:30683845) RGD PMID:30683845 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within ISO MGI:2182246 (PMID:9000074) RGD PMID:9000074 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 involved_in ISO (PMID:20064375), (PMID:20064376), (PMID:20075857) RGD PMID:20064375 PMID:20064376 PMID:20075857 NCBI chr17:19,983,217...20,163,598
Ensembl chr17:19,777,266...19,955,690 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (PMID:18258857) RGD PMID:18258857 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Krt10 keratin 10 acts_upstream_of_or_within ISO (PMID:19303854) RGD PMID:19303854 NCBI chr10:84,834,865...84,839,160
Ensembl chr10:84,338,706...84,343,701 		JBrowse link
G Krt14 keratin 14 acts_upstream_of_or_within ISO (PMID:19303854) RGD PMID:19303854 NCBI chr10:85,638,182...85,642,450
Ensembl chr10:85,066,802...85,171,799 		JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 acts_upstream_of_or_within ISO MGI:5810650 (PMID:22770845) RGD PMID:22770845 NCBI chr 7:115,066,427...115,087,625
Ensembl chr 7:113,186,370...113,207,489 		JBrowse link
G Lif LIF, interleukin 6 family cytokine acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22949634)
GO_REF:0000107		 RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr14:83,354,602...83,364,053
Ensembl chr14:79,134,574...79,140,482 		JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:18292307), (PMID:18604195) RGD PMID:18292307 PMID:18604195 NCBI chr 5:151,510,891...151,527,884
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17644814)		 Ensembl
RGD		 PMID:17644814 GO_REF:0000107 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Men1 menin 1 acts_upstream_of ISO MGI:2683274|MGI:3573783 (PMID:17927973) RGD PMID:17927973 NCBI chr 1:213,068,166...213,074,132
Ensembl chr 1:203,639,000...203,644,871 		JBrowse link
G Mettl5 methyltransferase 5, N6-adenosine involved_in ISO (PMID:32217665), (PMID:32783360) RGD PMID:32217665 PMID:32783360 NCBI chr 3:75,033,605...75,046,359
Ensembl chr 3:54,625,793...54,638,039 		JBrowse link
G Mir125a microRNA 125a acts_upstream_of ISO MGI:1921298 (PMID:22751012) RGD PMID:22751012 NCBI chr 1:67,350,675...67,350,759
Ensembl chr 1:58,677,626...58,677,710 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:17693062) RGD PMID:17693062 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:97168 (PMID:17693062)		 Ensembl
RGD		 PMID:17693062 GO_REF:0000107 NCBI chr17:11,102,284...11,107,949
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (PMID:20144788) RGD PMID:20144788 NCBI chr14:1,784,218...1,828,463
Ensembl chr14:1,640,746...1,683,524 		JBrowse link
G Nanog Nanog homeobox acts_upstream_of
acts_upstream_of_or_within		 IEP
ISO		 (PMID:17940068)
(PMID:16894029), (PMID:20123909)		 RGD PMID:16894029 PMID:17940068 PMID:20123909 PMID:22211239 RGD:9589812 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO (PMID:25773599) RGD PMID:25773599 NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403 		JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1862000 (PMID:18028901)		 Ensembl
RGD		 PMID:18028901 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20171952)		 UniProt
RGD		 PMID:20171952 GO_REF:0000024 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20171952)		 UniProt
RGD		 PMID:20171952 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IEP
IMP		 RGD PMID:19382247 PMID:18253862 RGD:2311162, RGD:2311168 NCBI chr12:12,793,957...12,799,156
Ensembl chr12:7,757,865...7,763,064 		JBrowse link
G Phf19 PHD finger protein 19 involved_in ISO (PMID:23104054), (PMID:23160351) RGD PMID:23104054 PMID:23160351 NCBI chr 3:38,572,766...38,604,950
Ensembl chr 3:18,175,282...18,196,405 		JBrowse link
G Phf5a PHD finger protein 5A involved_in ISO (PMID:27749823) RGD PMID:27749823 NCBI chr 7:115,258,609...115,265,174
Ensembl chr 7:113,378,471...113,385,460 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:20123909)
(PMID:23376973), (PMID:29153991)		 RGD PMID:20123909 PMID:23376973 PMID:29153991 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Prkca protein kinase C, alpha acts_upstream_of_or_within ISO (PMID:17644814) RGD PMID:17644814 NCBI chr10:93,388,991...93,787,617
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Psmd11 proteasome 26S subunit, non-ATPase 11 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:22972301)		 Ensembl
UniProt
RGD		 PMID:22972301 GO_REF:0000024 GO_REF:0000107 NCBI chr10:65,923,669...65,977,523
Ensembl chr10:65,433,853...65,479,766 		JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (PMID:24412312) RGD PMID:24412312 NCBI chr 5:148,120,712...148,238,468
Ensembl chr 5:142,837,127...142,954,039 		JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17693062)		 Ensembl
RGD		 PMID:17693062 GO_REF:0000107 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:25242323) RGD PMID:25242323 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Setd6 SET domain containing 6, protein lysine methyltransferase involved_in ISS
ISO		 GO_REF:0000024
(PMID:23324626)		 UniProt
RGD		 PMID:23324626 GO_REF:0000024 NCBI chr19:9,349,011...9,356,515
Ensembl chr19:9,347,458...9,350,453 		JBrowse link
G Shc4 SHC adaptor protein 4 acts_upstream_of_or_within ISO (PMID:22948967) RGD PMID:22948967 NCBI chr 3:112,880,598...112,974,216
Ensembl chr 3:112,880,600...112,974,366 		JBrowse link
G Slc9a1 solute carrier family 9 member A1 acts_upstream_of_or_within ISO (PMID:19011045) RGD PMID:19011045 NCBI chr 5:150,859,412...150,913,525
Ensembl chr 5:145,576,334...145,629,624 		JBrowse link
G Smad1 SMAD family member 1 involved_in ISO
IEA		 (PMID:23993924)
GO_REF:0000107		 RGD
Ensembl		 PMID:23993924 GO_REF:0000107 NCBI chr19:45,417,430...45,477,962
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Smad5 SMAD family member 5 involved_in ISO
IEA		 (PMID:23993924)
GO_REF:0000107		 RGD
Ensembl		 PMID:23993924 GO_REF:0000107 NCBI chr17:7,867,640...7,896,983
Ensembl chr17:7,864,720...7,891,634 		JBrowse link
G Smad9 SMAD family member 9 involved_in ISO
IEA		 (PMID:23993924)
GO_REF:0000107		 RGD
Ensembl		 PMID:23993924 GO_REF:0000107 NCBI chr 2:141,106,668...141,156,477
Ensembl chr 2:138,986,471...139,006,307 		JBrowse link
G Sox10 SRY-box transcription factor 10 IEP RGD PMID:12691661 RGD:1600051 NCBI chr 7:112,605,721...112,615,097
Ensembl chr 7:110,725,274...110,735,544 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO MGI:3717118 (PMID:20123909) RGD PMID:20123909 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:20123909) RGD PMID:20123909 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Sox21 SRY-box transcription factor 21 involved_in ISO (PMID:20876214) RGD PMID:20876214 NCBI chr15:101,699,580...101,703,175
Ensembl chr15:95,292,265...95,296,091 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044915 (PMID:18353863) RGD PMID:18353863 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:16894029) RGD PMID:16894029 NCBI chr 4:106,238,892...106,404,012
Ensembl chr 4:104,680,739...104,845,287 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO MGI:3040993 (PMID:20404091) RGD PMID:20404091 NCBI chr 3:181,733,524...181,742,412
Ensembl chr 3:161,315,031...161,322,995 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (PMID:15371309) RGD PMID:15371309 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Ttyh1 tweety family member 1 acts_upstream_of_or_within ISO (PMID:31079925) RGD PMID:31079925 NCBI chr 1:79,125,564...79,144,137
Ensembl chr 1:70,053,324...70,071,845 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (PMID:12142027) RGD PMID:12142027 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Vsir V-set immunoregulatory receptor acts_upstream_of_or_within ISO (PMID:20042595)
MGI:2676809 (PMID:22751012)		 RGD PMID:20042595 PMID:22751012 NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878 		JBrowse link
G Zfp281 zinc finger protein 281 involved_in ISO (PMID:21915945), (PMID:22988117) RGD PMID:21915945 PMID:22988117 NCBI chr13:50,647,750...50,655,912
Ensembl chr13:48,037,286...48,104,888 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17267691) RGD PMID:17267691 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2148567|MGI:3841145 (PMID:30478225)		 Ensembl
RGD		 PMID:30478225 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
cardiac muscle cell myoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:18545679) RGD PMID:18545679 NCBI chr 3:120,966,639...120,978,319
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:19620969)		 Ensembl
RGD		 PMID:19620969 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2154539 (PMID:9004034)		 Ensembl
RGD		 PMID:9004034 GO_REF:0000107 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Myocd myocardin involved_in ISO
IEA		 (PMID:15907818)
GO_REF:0000107		 RGD
Ensembl		 PMID:15907818 GO_REF:0000107 NCBI chr10:50,332,356...50,426,819
Ensembl chr10:49,836,641...49,927,627 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:20007915) RGD PMID:20007915 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Nrg1 neuregulin 1 involved_in ISO
IEA		 (PMID:17336907)
GO_REF:0000107		 RGD
Ensembl		 PMID:17336907 GO_REF:0000107 NCBI chr16:65,954,084...67,007,484
Ensembl chr16:59,250,854...60,296,884 		JBrowse link
G Rbm10 RNA binding motif protein 10 IEP RGD PMID:24178303 RGD:151667450 NCBI chr  X:4,093,914...4,126,060
Ensembl chr  X:1,540,398...1,572,575 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in ISO (PMID:21311046) RGD PMID:21311046 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:21199191)		 UniProt
RGD		 PMID:21199191 GO_REF:0000024 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
G Srf serum response factor involved_in ISO UniProtKB:Q9JM73 (PMID:19783823)
UniProtKB:P11831 (PMID:19783823)		 RGD PMID:19783823 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15459098) RGD PMID:15459098 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tbxt T-box transcription factor T involved_in ISO (PMID:21632880) RGD PMID:21632880 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
cardiac neural crest cell development involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (PMID:11694877) RGD PMID:11694877 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1346859 (PMID:18952847)		 Ensembl
RGD		 PMID:18952847 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:18952847) RGD PMID:18952847 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
cardiac neural crest cell development involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:21098571) RGD PMID:21098571 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in ISO (PMID:19008477) RGD PMID:19008477 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:19609448)		 Ensembl
RGD		 PMID:19609448 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19509466)		 Ensembl
RGD		 PMID:19509466 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (PMID:18539270) RGD PMID:18539270 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
cardiac neural crest cell differentiation involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:38951500) RGD PMID:38951500 NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962 		JBrowse link
cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in ISO (PMID:31219639) RGD PMID:31219639 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:149,553,724...149,593,111 		JBrowse link
G Edn1 endothelin 1 involved_in ISO (PMID:31219639) RGD PMID:31219639 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA
ISO		 GO_REF:0000107
MGI:1857473|MGI:2687362 (PMID:31219639)		 Ensembl
RGD		 PMID:31219639 GO_REF:0000107 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) RGD PMID:17286298 NCBI chr 1:165,631,462...165,650,430
Ensembl chr 1:156,219,460...156,230,667 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2386570|MGI:3803647 (PMID:20144608)		 Ensembl
RGD		 PMID:20144608 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Nrp1 neuropilin 1 NOT|involved_in ISO (PMID:26053665) RGD PMID:26053665 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:12464179) RGD PMID:12464179 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (PMID:18539270) RGD PMID:18539270 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
cardioblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:3774028 (PMID:21822279) RGD PMID:21822279 NCBI chr 8:127,059,215...127,067,070
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
ISS		 (PMID:15896309)
GO_REF:0000024		 RGD
AgBase		 PMID:15896309 GO_REF:0000024 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:22385964)		 UniProt
RGD		 PMID:22385964 GO_REF:0000024 NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2156165 (PMID:9028316)		 Ensembl
RGD		 PMID:9028316 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Cdk6 cyclin-dependent kinase 6 acts_upstream_of_or_within ISO MGI:3833563|MGI:5141514 (PMID:21508411) RGD PMID:21508411 NCBI chr 4:31,592,384...31,784,732
Ensembl chr 4:30,646,460...30,829,634 		JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 acts_upstream_of_or_within ISO MGI:3800602 (PMID:19137022) RGD PMID:19137022 NCBI chr 1:136,597,993...136,726,874
Ensembl chr 1:127,190,059...127,300,502 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183947 (PMID:17554309) RGD PMID:17554309 NCBI chr 1:88,161,342...88,175,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21148566) RGD PMID:21148566 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fancb FA complementation group B acts_upstream_of_or_within ISO (PMID:26658157) RGD PMID:26658157 NCBI chr  X:29,403,771...29,420,484
Ensembl chr  X:29,403,771...29,420,192 		JBrowse link
G Fbxo21 F-box protein 21 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:35987460)
GO_REF:0000107		 RGD
Ensembl		 PMID:35987460 GO_REF:0000107 NCBI chr12:44,231,918...44,266,035
Ensembl chr12:38,571,023...38,605,133 		JBrowse link
G Hoxb4 homeo box B4 involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr10:81,781,090...81,783,672
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Lmbr1l limb development membrane protein 1-like involved_in ISO (PMID:31073040) RGD PMID:31073040 NCBI chr 7:130,061,136...130,078,101
Ensembl chr 7:130,061,136...130,076,381 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:1861125 (PMID:16324150) RGD PMID:16324150 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mir125b1 microRNA 125b-1 acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr 8:50,850,036...50,850,122
Ensembl chr 8:41,952,966...41,953,052 		JBrowse link
G Mir125b2 microRNA 125b-2 acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr11:29,732,572...29,732,659 JBrowse link
G Mir126a microRNA 126a acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr 3:29,813,150...29,813,267
Ensembl chr 3:9,415,063...9,415,180 		JBrowse link
G Mir130a microRNA 130a acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr 3:90,229,228...90,229,315
Ensembl chr 3:69,822,542...69,822,629 		JBrowse link
G Mir155 microRNA 155 acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr11:37,261,114...37,261,178
Ensembl chr11:23,774,654...23,774,718 		JBrowse link
G Mir181c microRNA 181c acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr19:40,888,291...40,888,396
Ensembl chr19:23,983,523...23,983,628 		JBrowse link
G Mir193b microRNA 193b acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr10:1,317,742...1,317,824
Ensembl chr10:1,317,742...1,317,824 		JBrowse link
G Mir542 microRNA 542 acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr  X:132,802,623...132,802,701
Ensembl chr  X:132,802,623...132,802,701 		JBrowse link
G Mir99a microRNA 99a acts_upstream_of_or_within ISO (PMID:20660734) RGD PMID:20660734 NCBI chr11:16,200,443...16,200,523
Ensembl chr11:16,200,443...16,200,523 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit involved_in ISO (PMID:31776511) RGD PMID:31776511 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO
IEA		 (PMID:19778523)
GO_REF:0000107		 RGD
Ensembl		 PMID:19778523 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sh2b3 SH2B adaptor protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14612394)
GO_REF:0000107		 RGD
Ensembl		 PMID:14612394 GO_REF:0000107 NCBI chr12:40,391,755...40,414,336
Ensembl chr12:34,731,911...34,753,616 		JBrowse link
G Sp7 Sp7 transcription factor involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr 7:135,363,193...135,373,376
Ensembl chr 7:133,484,609...133,494,847 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2176073|MGI:3046779 (PMID:20709909) RGD PMID:20709909 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO MGI:2176073|MGI:2450311|MGI:2450743|MGI:2661471 (PMID:14726374), (PMID:15677556) RGD PMID:14726374 PMID:15677556 NCBI chr 5:133,823,093...133,837,737
Ensembl chr 5:128,587,701...128,600,976 		JBrowse link
G Terc telomerase RNA component acts_upstream_of_or_within ISO MGI:1857930 (PMID:17554309) RGD PMID:17554309 NCBI chr 2:114,744,148...114,744,535 JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA		 (PMID:30146126)
GO_REF:0000107		 RGD
Ensembl		 PMID:30146126 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:25952549)		 UniProt
RGD		 PMID:25952549 GO_REF:0000024 NCBI chr 5:43,759,271...43,791,682
Ensembl chr 5:38,962,171...38,995,199 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 acts_upstream_of_or_within ISO MGI:2152542 (PMID:17554309) RGD PMID:17554309 NCBI chr 9:81,404,507...81,493,293
Ensembl chr 9:73,955,216...74,044,018 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:2652418 (PMID:11588035)		 Ensembl
RGD		 PMID:11588035 GO_REF:0000107 NCBI chr 1:92,796,628...92,799,108
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
hepatoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggt1 gamma-glutamyltransferase 1 IEP RGD PMID:10934156 RGD:14701049 NCBI chr20:13,074,141...13,103,551
Ensembl chr20:13,074,700...13,108,442 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:3721426 (PMID:17580084) RGD PMID:17580084 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857856 (PMID:18635606)		 Ensembl
RGD		 PMID:18635606 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of ISO MGI:3769504 (PMID:18356246) RGD PMID:18356246 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in ISO (PMID:24023731)
MGI:2148567|MGI:3841145 (PMID:30478225)		 RGD PMID:24023731 PMID:30478225 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Krt18 keratin 18 IEP RGD PMID:18484094 RGD:27226811 NCBI chr 7:135,036,168...135,039,844
Ensembl chr 7:133,157,475...133,161,166
Ensembl chr10:133,157,475...133,161,166 		JBrowse link
G Mir346 microRNA 346 involved_in ISO (PMID:24023731) RGD PMID:24023731 NCBI chr16:10,218,118...10,218,215
Ensembl chr16:10,218,118...10,218,215 		JBrowse link
G Ndufs6 NADH:ubiquinone oxidoreductase subunit S6 acts_upstream_of_or_within ISO (PMID:33323934) RGD PMID:33323934 NCBI chr 1:29,968,833...29,977,423
Ensembl chr 1:29,968,842...29,977,467 		JBrowse link
negative regulation of amniotic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rest RE1-silencing transcription factor involved_in ISO
ISS
IEA		 (PMID:20942606)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:20942606 GO_REF:0000024 GO_REF:0000107 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
negative regulation of cardiac muscle cell myoblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA		 (PMID:21199191)
GO_REF:0000107		 RGD
Ensembl		 PMID:21199191 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
negative regulation of hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa9 heat shock protein family A (Hsp70) member 9 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21123823)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21123823 GO_REF:0000024 GO_REF:0000107 NCBI chr18:26,810,004...26,832,958
Ensembl chr18:26,535,798...26,554,292 		JBrowse link
G N4bp2l2 NEDD4 binding protein 2-like 2 involved_in ISO (PMID:19506020) RGD PMID:19506020 NCBI chr12:4,972,967...5,038,027
Ensembl chr12:103,590...197,784 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:23434824) RGD PMID:23434824 NCBI chr 3:81,001,529...81,031,165
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Tcf15 transcription factor 15 involved_in ISO (PMID:32669716) RGD PMID:32669716 NCBI chr 3:161,099,301...161,105,083
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tmsb4x thymosin beta 4, X-linked involved_in ISO (PMID:7694679) RGD PMID:7694679 NCBI chr  X:30,761,611...30,763,612
Ensembl chr  X:27,128,610...27,146,667
Ensembl chr10:27,128,610...27,146,667 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2652418 (PMID:11588035)		 Ensembl
RGD		 PMID:11588035 GO_REF:0000107 NCBI chr 1:92,796,628...92,799,108
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
negative regulation of mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO
IEA		 (PMID:24023731)
GO_REF:0000107		 RGD
Ensembl		 PMID:24023731 GO_REF:0000107 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Mir154 microRNA 154 acts_upstream_of_or_within ISO (PMID:25959411) RGD PMID:25959411 NCBI chr 6:128,752,947...128,753,030
Ensembl chr 6:128,752,947...128,753,030 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISO (PMID:18570921) RGD PMID:18570921 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
negative regulation of stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs12 Bardet-Biedl syndrome 12 acts_upstream_of_or_within ISO MGI:5444297 (PMID:22958920) RGD PMID:22958920 NCBI chr 2:122,131,550...122,149,152
Ensembl chr 2:120,203,428...120,219,255 		JBrowse link
G Ccnk cyclin K acts_upstream_of_or_within ISO (PMID:22547058) RGD PMID:22547058 NCBI chr 6:132,854,428...132,877,604
Ensembl chr 6:127,090,569...127,113,191 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:22547058)		 Ensembl
RGD		 PMID:22547058 GO_REF:0000107 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Cdk13 cyclin-dependent kinase 13 acts_upstream_of_or_within ISO (PMID:22547058) RGD PMID:22547058 NCBI chr17:51,945,975...52,040,218
Ensembl chr17:47,251,163...47,341,721 		JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO		 GO_REF:0000024
(PMID:26206133)		 UniProt
RGD		 PMID:26206133 GO_REF:0000024 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:106,008,095...106,160,791 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:2661097 (PMID:19303854) RGD PMID:19303854 NCBI chr 4:77,624,223...77,698,598
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19682396)		 Ensembl
RGD		 PMID:19682396 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO
ISS		 (PMID:19682396)
GO_REF:0000024		 RGD
UniProt		 PMID:19682396 GO_REF:0000024 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21235343)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21235343 GO_REF:0000024 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in ISO
IEA		 (PMID:19682396)
GO_REF:0000107		 RGD
Ensembl		 PMID:19682396 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Lbh LBH regulator of WNT signaling pathway involved_in ISO (PMID:25655704) RGD PMID:25655704 NCBI chr 6:22,569,238...22,593,056
Ensembl chr 6:22,568,834...22,593,079 		JBrowse link
G Mir125a microRNA 125a acts_upstream_of_or_within ISO MGI:1921298 (PMID:22751012) RGD PMID:22751012 NCBI chr 1:67,350,675...67,350,759
Ensembl chr 1:58,677,626...58,677,710 		JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (PMID:17940068) RGD PMID:17940068 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within ISO (PMID:22977234) RGD PMID:22977234 NCBI chr 3:175,157,824...175,237,831
Ensembl chr 3:154,738,581...154,818,594 		JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO (PMID:19340312) RGD PMID:19340312 NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:19682396) RGD PMID:19682396 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:25335925)		 Ensembl
RGD		 PMID:25335925 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO MGI:3769504 (PMID:18356246) RGD PMID:18356246 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Trim6 tripartite motif containing 6 involved_in ISO (PMID:22328504) RGD PMID:22328504 NCBI chr 1:168,095,619...168,108,809
Ensembl chr 1:158,683,746...158,696,914 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:20516196)		 Ensembl
RGD		 PMID:20516196 GO_REF:0000107 NCBI chr 8:13,380,551...13,451,640
Ensembl chr 8:5,095,722...5,167,010 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:32169943) RGD PMID:32169943 NCBI chr 5:149,665,467...149,693,127
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:23748442) RGD PMID:23748442 NCBI chr 6:16,242,622...16,246,662
Ensembl chr 6:10,490,032...10,494,064 		JBrowse link
neural crest cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1096359|MGI:1857891|MGI:2679699 (PMID:16368932), (PMID:17067568) RGD PMID:16368932 PMID:17067568 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Arb2a ARB2 cotranscriptional regulator A involved_in ISO (PMID:29311329) RGD PMID:29311329 NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:19793887) RGD PMID:19793887 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Cdh2 cadherin 2 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:26750727)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:26750727 GO_REF:0000024 GO_REF:0000107 NCBI chr18:8,051,097...8,265,288
Ensembl chr18:7,776,704...7,990,167 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within ISO MGI:2679699 (PMID:17067568) RGD PMID:17067568 NCBI chr 1:244,883,822...244,887,657
Ensembl chr 1:235,471,298...235,475,204 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 acts_upstream_of_or_within ISO MGI:1096359 (PMID:17067568) RGD PMID:17067568 NCBI chr 1:244,870,412...244,881,610
Ensembl chr 1:235,459,356...235,466,842 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (PMID:15327783), (PMID:9671575) RGD PMID:9671575 PMID:15327783 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Ednra endothelin receptor type A acts_upstream_of_or_within ISO MGI:1857473 (PMID:15306564), (PMID:15327783), (PMID:9449664) RGD PMID:9449664 PMID:15306564 PMID:15327783 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1347481 (PMID:16839542) RGD PMID:16839542 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (PMID:16839542) RGD PMID:16839542 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO MGI:1857639 (PMID:9671575) RGD PMID:9671575 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Kbtbd8 kelch repeat and BTB domain containing 8 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26399832)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26399832 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:129,232,781...129,245,608
Ensembl chr 4:127,676,141...127,687,697 		JBrowse link
G Klhl12 kelch-like family member 12 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27716508)		 UniProt
Ensembl
RGD		 PMID:27716508 GO_REF:0000024 GO_REF:0000107 NCBI chr13:48,451,920...48,485,638
Ensembl chr13:45,899,928...45,933,643 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO MGI:1346859 (PMID:18952847) RGD PMID:18952847 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:18952847) RGD PMID:18952847 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:26399832)		 UniProt
Ensembl
RGD		 PMID:26399832 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:254,870,195...254,881,070
Ensembl chr 1:244,921,377...244,932,088 		JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS		 (PMID:27716508)
GO_REF:0000024		 RGD
UniProt		 PMID:27716508 GO_REF:0000024 NCBI chr 1:28,966,518...28,982,188
Ensembl chr 1:28,966,518...28,982,189 		JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27716508)		 UniProt
Ensembl
RGD		 PMID:27716508 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:142,451,791...142,475,061
Ensembl chr 5:142,451,778...142,475,067 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) RGD PMID:17473173 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:12444107) RGD PMID:12444107 NCBI chr11:99,686,934...99,690,349
Ensembl chr11:86,181,909...86,186,200 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:3041881 (PMID:15691760) RGD PMID:15691760 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in ISO (PMID:26399832) RGD PMID:26399832 NCBI chr18:56,537,437...56,570,727
Ensembl chr18:54,267,026...54,300,324 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:8622766) RGD PMID:8622766 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 involved_in ISO MGI:1857637 (PMID:23933587) RGD PMID:23933587 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Ednra endothelin receptor type A involved_in ISO MGI:102780|MGI:2687362|MGI:3773698|MGI:4867385 (PMID:19185569), (PMID:23933587), (PMID:28455376) RGD PMID:19185569 PMID:23933587 PMID:28455376 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:26295701) RGD PMID:26295701 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Frzb frizzled-related protein involved_in ISO (PMID:10654605) RGD PMID:10654605 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in ISS
ISO		 GO_REF:0000024
(PMID:9165122)		 UniProt
RGD		 PMID:9165122 GO_REF:0000024 NCBI chr 9:94,184,442...94,206,851
Ensembl chr 9:86,742,102...86,755,108 		JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in ISO (PMID:11029007) RGD PMID:11029007 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO		 GO_REF:0000024
(PMID:21610032)		 UniProt
RGD		 PMID:21610032 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Otud5 OTU deubiquitinase 5 involved_in ISO
IEA
ISS		 (PMID:33523931)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:33523931 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,296,750...17,331,257
Ensembl chr  X:14,626,164...14,659,573 		JBrowse link
G Rps7 ribosomal protein S7 acts_upstream_of_or_within ISO MGI:3043039 (PMID:15384171) RGD PMID:15384171 NCBI chr 6:50,994,581...50,999,447
Ensembl chr 6:45,223,980...45,271,145
Ensembl chr 5:45,223,980...45,271,145 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO MGI:105923 (PMID:28455376) RGD PMID:28455376 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:19793887)		 Ensembl
RGD		 PMID:19793887 GO_REF:0000107 NCBI chr18:69,518,988...69,549,684
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Wnt10a Wnt family member 10A acts_upstream_of_or_within ISO (PMID:17286598) RGD PMID:17286598 NCBI chr 9:83,798,594...83,811,060
Ensembl chr 9:76,349,931...76,362,400 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1862004 (PMID:15384171) RGD PMID:15384171 NCBI chr15:105,982,711...105,988,167
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO MGI:3052154 (PMID:15136147) RGD PMID:15136147 NCBI chr15:105,964,932...105,973,669
Ensembl chr15:99,560,323...99,567,035 		JBrowse link
neural crest cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 involved_in ISO MGI:1857637 (PMID:23933587) RGD PMID:23933587 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA
ISO		 GO_REF:0000107
MGI:1857473|MGI:3773698|MGI:4867385 (PMID:17294360), (PMID:23933587)		 Ensembl
RGD		 PMID:17294360 PMID:23933587 GO_REF:0000107 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3045799 (PMID:20130188)		 Ensembl
RGD		 PMID:20130188 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsc goosecoid homeobox involved_in ISO (PMID:24290375) RGD PMID:24290375 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO MGI:2651395 (PMID:15226263) RGD PMID:15226263 NCBI chr 3:63,387,378...63,506,980
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO (PMID:38951500) RGD PMID:38951500 NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962 		JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO MGI:3574399 (PMID:15649475) RGD PMID:15649475 NCBI chr 1:212,227,124...212,230,656
Ensembl chr 1:202,786,627...202,817,587 		JBrowse link
G Coro1c coronin 1C involved_in ISO
IBA		 (PMID:25074804)
GO_REF:0000033		 RGD
GO_Central		 PMID:25074804 GO_REF:0000033 NCBI chr12:48,373,573...48,445,718
Ensembl chr12:42,712,991...42,785,179 		JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (PMID:9624616) RGD PMID:9624616 NCBI chr 3:183,980,458...184,004,958
Ensembl chr 3:163,562,520...163,585,093 		JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO (PMID:10591209) RGD PMID:10591209 NCBI chr15:87,055,490...87,086,765
Ensembl chr15:80,643,043...80,672,115 		JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3039290 (PMID:15037550)		 Ensembl
RGD		 PMID:15037550 GO_REF:0000107 NCBI chr  X:68,297,529...68,310,335
Ensembl chr  X:64,257,351...64,270,157 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:10655590)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:10655590 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:76,973,386...78,045,633
Ensembl chr 9:69,531,481...70,596,595 		JBrowse link
G Fgf19 fibroblast growth factor 19 acts_upstream_of_or_within ISO MGI:3044957 (PMID:15789410) RGD PMID:15789410 NCBI chr 1:209,485,813...209,490,267
Ensembl chr 1:200,056,644...200,060,287 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (PMID:15996652), (PMID:19700621), (PMID:23144817) RGD PMID:15996652 PMID:19700621 PMID:23144817 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15242795)		 UniProt
Ensembl
RGD		 PMID:15242795 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2179429 (PMID:14659802)		 Ensembl
RGD		 PMID:14659802 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:9165122)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:9165122 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,184,442...94,206,851
Ensembl chr 9:86,742,102...86,755,108 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:108075 (PMID:16687132)		 Ensembl
RGD		 PMID:16687132 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (PMID:11401406) RGD PMID:11401406 NCBI chr 7:36,782,621...36,863,796
Ensembl chr 7:34,896,053...34,977,214 		JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO MGI:1934917 (PMID:16316641) RGD PMID:16316641 NCBI chr 3:187,647,904...187,695,974
Ensembl chr 3:167,270,296...167,318,451 		JBrowse link
G Nrp1 neuropilin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrtn neurturin acts_upstream_of_or_within ISO (PMID:15242795) RGD PMID:15242795 NCBI chr 9:1,669,099...1,674,957
Ensembl chr 9:1,581,975...1,583,102 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO MGI:3522498 (PMID:16423343) RGD PMID:16423343 NCBI chr 3:152,130,767...152,160,487
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:3043030 (PMID:15384171) RGD PMID:15384171 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
G Pax6 paired box 6 IMP RGD PMID:9079035 RGD:8552342 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IBA
ISO		 GO_REF:0000033
(PMID:22215812)		 GO_Central
RGD		 PMID:22215812 GO_REF:0000033 NCBI chr 5:149,828,716...149,904,955
Ensembl chr 5:144,549,363...144,620,865 		JBrowse link
G Radil Rap associating with DIL domain involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:12,024,395...12,088,540
Ensembl chr12:12,024,395...12,088,540 		JBrowse link
G Ret ret proto-oncogene acts_upstream_of_or_within ISO MGI:2449909 (PMID:15242795) RGD PMID:15242795 NCBI chr 4:152,998,344...153,040,556
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
G Sema3a semaphorin 3A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3b semaphorin 3B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:117,150,307...117,161,570
Ensembl chr 8:108,271,666...108,282,919 		JBrowse link
G Sema3c semaphorin 3C involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2150759 (PMID:11688556)		 GO_Central
RGD		 PMID:11688556 GO_REF:0000033 NCBI chr 4:18,538,452...18,702,453
Ensembl chr 4:17,583,212...17,746,534 		JBrowse link
G Sema3d semaphorin 3D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:22,316,769...22,505,930
Ensembl chr 4:22,316,779...22,505,930 		JBrowse link
G Sema3e semaphorin 3E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:21,252,686...21,510,449
Ensembl chr 4:20,299,718...20,555,229 		JBrowse link
G Sema3f semaphorin 3F involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
G Sema3g semaphorin 3G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:6,413,589...6,425,221
Ensembl chr16:6,413,589...6,425,221 		JBrowse link
G Sema4a semaphorin 4A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:176,194,248...176,215,752
Ensembl chr 2:173,896,439...173,914,442 		JBrowse link
G Sema4b semaphorin 4B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:134,136,646...134,177,777
Ensembl chr 1:134,149,536...134,177,775 		JBrowse link
G Sema4c semaphorin 4C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:38,791,668...38,802,171
Ensembl chr 9:38,791,670...38,802,128 		JBrowse link
G Sema4d semaphorin 4D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:13,582,085...13,688,889
Ensembl chr17:13,430,379...13,537,138 		JBrowse link
G Sema4f semaphorin 4F involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:115,411,411...115,437,721
Ensembl chr 4:115,411,417...115,437,721 		JBrowse link
G Sema4g semaphorin 4G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:253,799,552...253,814,504
Ensembl chr 1:243,853,854...243,865,341 		JBrowse link
G Sema5a semaphorin 5A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:85,020,724...85,451,938
Ensembl chr 2:83,309,843...83,741,084 		JBrowse link
G Sema5b semaphorin 5B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:65,102,532...65,225,456
Ensembl chr11:65,102,031...65,225,311 		JBrowse link
G Sema6a semaphorin 6A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:40,050,623...40,171,954
Ensembl chr18:40,050,624...40,171,954 		JBrowse link
G Sema6b semaphorin 6B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:1,038,103...1,055,063
Ensembl chr 9:950,939...961,521 		JBrowse link
G Sema6c semaphorin 6C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:185,422,636...185,436,237
Ensembl chr 2:182,737,474...182,746,856 		JBrowse link
G Sema6d semaphorin 6D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:131,801,680...132,394,578
Ensembl chr 3:111,883,872...111,941,094 		JBrowse link
G Sema7a semaphorin 7A (John Milton Hagen blood group) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:58,348,448...58,370,536
Ensembl chr 8:58,348,448...58,370,536 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857796 (PMID:15936751)		 UniProt
RGD		 PMID:15936751 GO_REF:0000024 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:101791 (PMID:16687132)		 Ensembl
RGD		 PMID:16687132 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sox10 SRY-box transcription factor 10 involved_in IBA
ISO		 GO_REF:0000033
(PMID:15572147)		 GO_Central
RGD		 PMID:15572147 GO_REF:0000033 NCBI chr 7:112,605,721...112,615,097
Ensembl chr 7:110,725,274...110,735,544 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15572147)		 UniProt
RGD		 PMID:15572147 GO_REF:0000024 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179190|MGI:2179191 (PMID:15652707), (PMID:20501333)		 UniProt
RGD		 PMID:15652707 PMID:20501333 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387501 (PMID:12522767) RGD PMID:12522767 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
neural crest cell migration involved in autonomic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fn1 fibronectin 1 involved_in ISO
IEA		 (PMID:26571399)
GO_REF:0000107		 RGD
Ensembl		 PMID:26571399 GO_REF:0000107 NCBI chr 9:80,645,507...80,714,200
Ensembl chr 9:73,196,044...73,264,678 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:18356247), (PMID:19325129), (PMID:19386662) RGD PMID:18356247 PMID:19325129 PMID:19386662 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:18356247), (PMID:19386662)		 Ensembl
RGD		 PMID:18356247 PMID:19386662 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Phox2b paired-like homeobox 2b involved_in ISO (PMID:10360575) RGD PMID:10360575 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:18356247), (PMID:19325129), (PMID:19386662) RGD PMID:18356247 PMID:19325129 PMID:19386662 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
neural crest cell migration involved in heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) RGD PMID:17286298 NCBI chr 1:165,631,462...165,650,430
Ensembl chr 1:156,219,460...156,230,667 		JBrowse link
neural crest cell migration involved in sympathetic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema3a semaphorin 3A involved_in ISO (PMID:19325129) RGD PMID:19325129 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P23359 (PMID:23863481)		 Ensembl
RGD		 PMID:23863481 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P21275 (PMID:23863481) RGD PMID:23863481 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO (PMID:26053665) RGD PMID:26053665 NCBI chr 4:18,538,452...18,702,453
Ensembl chr 4:17,583,212...17,746,534 		JBrowse link
positive regulation of cardioblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISS
ISO		 GO_REF:0000024
(PMID:26489465)		 UniProt
RGD		 PMID:26489465 GO_REF:0000024 NCBI chr 2:149,006,089...149,044,192
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in IEA
ISO		 GO_REF:0000107
(PMID:11889119)		 Ensembl
RGD		 PMID:11889119 GO_REF:0000107 NCBI chr10:16,844,888...16,851,458
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11431700)		 UniProt
Ensembl
RGD		 PMID:11431700 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:36,688,014...36,734,885 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15896309)		 AgBase
RGD		 PMID:15896309 GO_REF:0000024 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
positive regulation of hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 involved_in ISO (PMID:24590069) RGD PMID:24590069 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
positive regulation of mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ltbp3 latent transforming growth factor beta binding protein 3 involved_in ISO (PMID:18672106) RGD PMID:18672106 NCBI chr 1:212,458,362...212,475,302
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Nr6a1 nuclear receptor subfamily 6, group A, member 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26769970)		 Ensembl
RGD		 PMID:26769970 GO_REF:0000107 NCBI chr 3:42,904,832...43,094,622
Ensembl chr 3:22,496,943...22,683,131 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO (PMID:21401405) RGD PMID:21401405 NCBI chr 4:178,512,272...179,467,686
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO
IEA		 (PMID:21401405)
GO_REF:0000107		 RGD
Ensembl		 PMID:21401405 GO_REF:0000107 NCBI chr 1:179,157,678...179,769,243
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS		 (PMID:21401405)
GO_REF:0000024		 RGD
UniProt		 PMID:21401405 GO_REF:0000024 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
positive regulation of stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:15781473) RGD PMID:15781473 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta acts_upstream_of_or_within ISO (PMID:22064483) RGD PMID:22064483 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Hoxb4 homeo box B4 involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr10:81,781,090...81,783,672
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:2683274|MGI:3573783 (PMID:17927973) RGD PMID:17927973 NCBI chr 1:213,068,166...213,074,132
Ensembl chr 1:203,639,000...203,644,871 		JBrowse link
G Mir100 microRNA 100 acts_upstream_of_or_within ISO (PMID:20439489) RGD PMID:20439489 NCBI chr 8:41,901,225...41,901,304
Ensembl chr 8:41,901,225...41,901,304 		JBrowse link
G Mir137 microRNA 137 acts_upstream_of_or_within ISO (PMID:20439489) RGD PMID:20439489 NCBI chr 2:206,480,881...206,480,982
Ensembl chr 2:206,480,884...206,480,985 		JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within ISO (PMID:20439489) RGD PMID:20439489 NCBI chr 5:165,815,952...165,816,053
Ensembl chr 5:160,533,002...160,533,103 		JBrowse link
G Mtch2 mitochondrial carrier 2 involved_in ISO (PMID:30510213) RGD PMID:30510213 NCBI chr 3:97,286,388...97,306,028
Ensembl chr 3:76,830,413...76,850,189 		JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr13:50,865,253...50,985,107
Ensembl chr13:48,316,301...48,433,326 		JBrowse link
G Nudt21 nudix hydrolase 21 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29249356)		 UniProt
RGD		 PMID:29249356 GO_REF:0000024 NCBI chr19:10,980,797...10,996,903
Ensembl chr19:10,974,241...10,991,682 		JBrowse link
G Ptn pleiotrophin involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:15121180)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15121180 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein acts_upstream_of_or_within ISO (PMID:25335925) RGD PMID:25335925 NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:26990106) RGD PMID:26990106 NCBI chr17:18,481,893...18,494,440
Ensembl chr17:18,275,688...18,288,102 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27912097)
(PMID:25915124), (PMID:29555651)		 RGD PMID:25915124 PMID:27912097 PMID:29555651 NCBI chr 7:8,733,056...8,738,543
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO MGI:3717118 (PMID:20123909) RGD PMID:20123909 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Sp7 Sp7 transcription factor involved_in ISO (PMID:18932205) RGD PMID:18932205 NCBI chr 7:135,363,193...135,373,376
Ensembl chr 7:133,484,609...133,494,847 		JBrowse link
G Tacstd2 tumor-associated calcium signal transducer 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:23070813)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:23070813 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:98,037,620...98,039,320
Ensembl chr 4:96,707,951...96,709,650 		JBrowse link
G Tcf15 transcription factor 15 involved_in ISO (PMID:23395635) RGD PMID:23395635 NCBI chr 3:161,099,301...161,105,083
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Vsir V-set immunoregulatory receptor acts_upstream_of_or_within ISO MGI:2676809 (PMID:22751012) RGD PMID:22751012 NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878 		JBrowse link
regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eng endoglin NOT|involved_in ISO (PMID:17628518) RGD PMID:17628518 NCBI chr 3:36,332,190...36,370,324
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
regulation of hematopoietic stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk6 cyclin-dependent kinase 6 acts_upstream_of_or_within ISO MGI:3053975 (PMID:25342715) RGD PMID:25342715 NCBI chr 4:31,592,384...31,784,732
Ensembl chr 4:30,646,460...30,829,634 		JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23403623)		 UniProt
RGD		 PMID:23403623 GO_REF:0000024 NCBI chr 6:21,941,147...21,977,115
Ensembl chr 6:16,188,979...16,224,971 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:32542325)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:32542325 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:202,895,751...202,903,458 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in ISO (PMID:32103174) RGD PMID:32103174 NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Pus7 pseudouridine synthase 7 involved_in ISO (PMID:29628141) RGD PMID:29628141 NCBI chr 4:12,252,553...12,293,547
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase involved_in ISO (PMID:27141965) RGD PMID:27141965 NCBI chr 1:182,386,197...182,411,695
Ensembl chr 1:182,388,060...182,411,090 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:30065315), (PMID:30150673) RGD PMID:30065315 PMID:30150673 NCBI chr 5:149,665,467...149,693,127
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
regulation of mesenchymal stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd1 frizzled class receptor 1 involved_in ISO (PMID:20039315) RGD PMID:20039315 NCBI chr 4:30,265,074...30,269,472
Ensembl chr 4:29,310,091...29,312,643
Ensembl chr 4:29,310,091...29,312,643 		JBrowse link
G Mir21 microRNA 21 IMP RGD PMID:27798620 RGD:41404703 NCBI chr10:71,902,600...71,902,691
Ensembl chr10:71,405,257...71,405,348 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21596750)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21596750 GO_REF:0000024 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Slc4a11 solute carrier family 4 member 11 involved_in ISO (PMID:33247189) RGD PMID:33247189 NCBI chr 3:138,353,305...138,365,983
Ensembl chr 3:117,900,223...117,912,674 		JBrowse link
G Wnt3 Wnt family member 3 involved_in ISO (PMID:20039315) RGD PMID:20039315 NCBI chr10:89,180,224...89,224,195
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
regulation of neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A NOT|involved_in ISO (PMID:15073157) RGD PMID:15073157 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A NOT|involved_in ISO (PMID:15073157) RGD PMID:15073157 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
regulation of stem cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (PMID:15713842) RGD PMID:15713842 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Kdm3a lysine demethylase 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17938240)		 Ensembl
RGD		 PMID:17938240 GO_REF:0000107 NCBI chr 4:105,189,208...105,233,526
Ensembl chr 4:103,630,908...103,675,073 		JBrowse link
G Kdm4c lysine demethylase 4C acts_upstream_of_or_within ISO (PMID:17938240) RGD PMID:17938240 NCBI chr 5:93,146,404...93,353,040
Ensembl chr 5:88,100,733...88,306,818 		JBrowse link
G Mir146a microRNA 146a involved_in ISO (PMID:29384235) RGD PMID:29384235 NCBI chr10:28,349,996...28,350,090
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir295-1 microRNA 295-1 involved_in ISO (PMID:21490602) RGD PMID:21490602 NCBI chr 1:74,877,973...74,878,053
Ensembl chr 1:65,962,566...65,962,646 		JBrowse link
G Nsun2 NOP2/Sun RNA methyltransferase 2 involved_in ISO (PMID:22144916) RGD PMID:22144916 NCBI chr 1:35,490,583...35,514,839
Ensembl chr 1:33,662,139...33,685,862 		JBrowse link
G Ociad1 OCIA domain containing 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23972987)
GO_REF:0000104		 UniProt
RGD		 PMID:23972987 GO_REF:0000024 GO_REF:0000104 NCBI chr14:34,897,851...34,915,291
Ensembl chr14:34,897,847...34,915,286 		JBrowse link
G Prdm4 PR/SET domain 4 involved_in IMP PMID:23048031 ParkinsonsUK-UCL PMID:23048031 RGD:10054084 NCBI chr 7:19,841,560...19,868,224
Ensembl chr 7:17,954,019...17,980,489 		JBrowse link
G Smyd5 SMYD family member 5 involved_in ISO (PMID:28951459)
(PMID:28250819), (PMID:28951459)		 RGD PMID:28250819 PMID:28951459 NCBI chr 4:119,527,115...119,541,580
Ensembl chr 4:117,969,626...117,984,347 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:21385842) RGD PMID:21385842 NCBI chr 1:104,838,795...104,855,635
Ensembl chr 1:95,703,005...95,719,186 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21490602)		 Ensembl
RGD		 PMID:21490602 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
respiratory basal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc88c coiled-coil domain containing 88C acts_upstream_of_or_within ISO (PMID:33929515) RGD PMID:33929515 NCBI chr 6:125,899,337...126,019,162
Ensembl chr 6:120,169,738...120,289,555 		JBrowse link
G Foxa1 forkhead box A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2653543 (PMID:16214823)		 Ensembl
RGD		 PMID:16214823 GO_REF:0000107 NCBI chr 6:80,838,380...80,871,195
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
squamous basal epithelial stem cell differentiation involved in prostate gland acinus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3044679 (PMID:17215304) RGD PMID:17215304 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (PMID:15371309) RGD PMID:15371309 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
stem cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO MGI:1857553 (PMID:8673125) RGD PMID:8673125 NCBI chr 7:40,044,185...40,063,778
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2156165 (PMID:8623928)		 Ensembl
RGD		 PMID:8623928 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:12843296) RGD PMID:12843296 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Mir203-2 microRNA 203-2 acts_upstream_of_or_within ISO (PMID:21307095) RGD PMID:21307095 NCBI chr 6:137,020,691...137,020,805
Ensembl chr 6:131,199,542...131,199,656 		JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within ISO (PMID:21307095) RGD PMID:21307095 NCBI chr17:6,278,692...6,278,788
Ensembl chr17:6,273,264...6,273,360 		JBrowse link
G Msi2 musashi RNA-binding protein 2 involved_in ISO (PMID:12407178) RGD PMID:12407178 NCBI chr10:73,640,960...74,007,497
Ensembl chr10:73,147,380...73,510,157 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (PMID:20133625) RGD PMID:20133625 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO		 GO_REF:0000024
(PMID:12843296)		 UniProt
RGD		 PMID:12843296 GO_REF:0000024 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:12843296) RGD PMID:12843296 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (PMID:12843296) RGD PMID:12843296 NCBI chr 7:118,514,684...118,559,316
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
stem cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within ISO (PMID:21576465) RGD PMID:21576465 NCBI chr 5:130,034,473...130,040,283
Ensembl chr 5:124,805,883...124,811,630 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of ISO MGI:98956 (PMID:17462603) RGD PMID:17462603 NCBI chr 2:171,387,536...171,395,081
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:20228271) RGD PMID:20228271 NCBI chr 5:19,814,345...19,819,859
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Sox18 SRY-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:20228271) RGD PMID:20228271 NCBI chr 3:189,163,000...189,164,802
Ensembl chr 3:168,785,490...168,787,290 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO MGI:1934917 (PMID:16316641) RGD PMID:16316641 NCBI chr 3:187,647,904...187,695,974
Ensembl chr 3:167,270,296...167,318,451 		JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO MGI:2137037 (PMID:16319111) RGD PMID:16319111 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO MGI:2670663 (PMID:16319111) RGD PMID:16319111 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
(PMID:15337776)		 Ensembl
RGD		 PMID:15337776 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19386662)		 Ensembl
RGD		 PMID:19386662 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 8:117,236,269...117,265,206
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      cellular developmental process 4812
        cell differentiation 4811
          stem cell differentiation 288
            angioblast cell differentiation 0
            cardioblast differentiation + 18
            hematopoietic stem cell differentiation + 43
            hepatoblast differentiation 4
            limb basal epidermal cell differentiation + 0
            mesenchymal stem cell differentiation + 17
            negative regulation of stem cell differentiation + 32
            neural crest cell differentiation + 100
            positive regulation of stem cell differentiation + 29
            regulation of stem cell differentiation + 82
            respiratory basal cell differentiation 2
            squamous basal epithelial stem cell differentiation involved in prostate gland acinus development 2
            stem cell development + 97
            stem cell fate commitment + 9
paths to the root