Wnt10a (Wnt family member 10A) - Rat Genome Database

Name: Wnt10a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Wnt10a (Wnt family member 10A) Rattus norvegicus

Analyze

Symbol:

Wnt10a

Name:

Wnt family member 10A

RGD ID:

1307015

Description:

Predicted to have receptor ligand activity. Predicted to be involved in several processes, including animal organ development; cellular response to transforming growth factor beta stimulus; and regulation of odontogenesis of dentin-containing tooth. Human ortholog(s) of this gene implicated in Schopf-Schulz-Passarge syndrome and tooth agenesis. Orthologous to human WNT10A (Wnt family member 10A); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; basal cell carcinoma pathway; INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC316527; protein Wnt-10a; wingless related MMTV integration site 10a; wingless-type MMTV integration site family, member 10A

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WNT10A (Wnt family member 10A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Wnt10a (wingless-type MMTV integration site family, member 10A)	HGNC	NCBI, HomoloGene, Inparanoid, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Wnt10a (Wnt family member 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WNT10A (Wnt family member 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WNT10A (Wnt family member 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wnt10a (Wnt family member 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WNT10A (Wnt family member 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	WNT10A (Wnt family member 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wnt10a (Wnt family member 10A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	WNT10B (Wnt family member 10B)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	WNT10A (Wnt family member 10A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Wnt10a (wingless-type MMTV integration site family, member 10A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	wnt10a (wingless-type MMTV integration site family, member 10a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	lin-44	Alliance	DIOPT (Ensembl Compara\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Wnt10	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	76,349,931 - 76,362,400 (+)	NCBI
Rnor_6.0 Ensembl	9	82,053,581 - 82,066,047 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	9	82,053,581 - 82,066,047 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	9	81,816,108 - 81,829,217 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	74,124,403 - 74,137,508 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	9	74,271,590 - 74,284,435 (+)	NCBI
Celera	9	73,922,407 - 73,934,776 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arthralgia (ISO)

bladder exstrophy-epispadias-cloacal exstrophy complex (ISO)

ectodermal dysplasia 1 (ISO)

genetic disease (ISO)

hypohidrotic ectodermal dysplasia (ISO)

mantle cell lymphoma (ISO)

myofibrillar myopathy 1 (ISO)

Neurodevelopmental Disorders (ISO)

Odontoonychodermal Dysplasia (ISO)

palmoplantar keratosis (ISO)

Schopf-Schulz-Passarge syndrome (ISO)

Selective Tooth Agenesis 4 (ISO)

tooth agenesis (ISO,ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (ISO)

choline (ISO)

Deguelin (ISO)

dextran sulfate (ISO)

diazinon (EXP,ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indinavir (ISO)

kojic acid (ISO)

L-methionine (ISO)

lamivudine (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

nickel atom (EXP)

Pristimerin (ISO)

resveratrol (ISO)

saquinavir (ISO)

sodium arsenite (ISO)

tebuconazole (ISO)

trimellitic anhydride (ISO)

tungsten (ISO)

valproic acid (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

canonical Wnt signaling pathway (IBA,ISO)

cell fate commitment (IBA)

cellular response to transforming growth factor beta stimulus (ISO)

epidermis morphogenesis (ISO)

hair follicle development (ISO)

hair follicle morphogenesis (ISO)

neural crest cell differentiation (ISO)

neuron differentiation (IBA)

odontogenesis (ISO)

positive regulation of gene expression (ISO)

regulation of odontogenesis of dentin-containing tooth (ISO)

sebaceous gland development (ISO)

skin development (ISO)

tongue development (ISO)

Cellular Component

cellular_component (ND)

extracellular space (IBA)

Molecular Function

cytokine activity (IBA)

frizzled binding (IBA)

molecular_function (ND)

receptor ligand activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

basal cell carcinoma pathway (IEA)

Hedgehog signaling pathway (IEA)

Wnt signaling pathway (IEA,ISO)

Wnt signaling, canonical pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Katoh Y and Katoh M, Int J Mol Med 2005 Mar;15(3):527-31.
3.	MGD data from the GO Consortium
4.	Narita T, etal., Dev Dyn. 2005 Jun;233(2):282-7.
5.	OMIM Disease Annotation Pipeline
6.	Pipeline to import KEGG annotations from KEGG into RGD
7.	RGD automated data pipeline
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions
10.	RGD comprehensive gene curation
11.	Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
12.	van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.
13.	Yamashiro T, etal., Differentiation. 2007 Jun;75(5):452-62. Epub 2007 Feb 5.

Additional References at PubMed

PMID:15040835	PMID:17847007	PMID:19103603	PMID:19559398	PMID:20163410	PMID:27832641	PMID:28733458	PMID:30535384	PMID:30622965

Genomics

Comparative Map Data

Wnt10a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	76,349,931 - 76,362,400 (+)	NCBI
Rnor_6.0 Ensembl	9	82,053,581 - 82,066,047 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	9	82,053,581 - 82,066,047 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	9	81,816,108 - 81,829,217 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	74,124,403 - 74,137,508 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	9	74,271,590 - 74,284,435 (+)	NCBI
Celera	9	73,922,407 - 73,934,776 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

WNT10A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	218,880,852 - 218,899,581 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	218,874,116 - 218,893,931 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	219,745,574 - 219,758,650 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	219,453,499 - 219,466,895 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	219,570,759 - 219,584,156	NCBI
Celera	2	213,515,015 - 213,528,391 (+)	NCBI
Cytogenetic Map	2	q35	NCBI
HuRef	2	211,599,762 - 211,613,219 (+)	NCBI		HuRef
CHM1_1	2	219,752,633 - 219,766,029 (+)	NCBI		CHM1_1

Wnt10a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	74,831,178 - 74,843,335 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	1	74,830,675 - 74,843,338 (+)	Ensembl
GRCm38	1	74,792,019 - 74,804,176 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	74,791,516 - 74,804,179 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	74,838,593 - 74,850,750 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	74,724,723 - 74,737,383 (+)	NCBI			mm8
Celera	1	75,347,091 - 75,359,286 (+)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI

Wnt10a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	14,528,153 - 14,540,818 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	14,528,373 - 14,540,801 (-)	NCBI	ChiLan1.0	ChiLan1.0

WNT10A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	224,735,800 - 224,748,567 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,736,598 - 224,747,912 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	106,140,859 - 106,154,301 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

WNT10A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	37	25,462,748 - 25,474,764 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	37	25,463,064 - 25,475,407 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Wnt10a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936569	1,309,140 - 1,321,923 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WNT10A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	120,925,201 - 120,938,430 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	120,925,204 - 120,939,032 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	134,032,841 - 134,033,943 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WNT10A
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	104,781,705 - 104,795,500 (+)	NCBI
ChlSab1.1 Ensembl	10	104,782,191 - 104,794,854 (+)	Ensembl

Wnt10a
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624823	6,126,238 - 6,140,764 (-)	NCBI

Position Markers

RH134527

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	82,065,738 - 82,065,930	NCBI	Rnor6.0
Rnor_5.0	9	81,828,908 - 81,829,100	UniSTS	Rnor5.0
RGSC_v3.4	9	74,137,199 - 74,137,391	UniSTS	RGSC3.4
Celera	9	73,934,467 - 73,934,659	UniSTS
RH 3.4 Map	9	712.59	UniSTS
Cytogenetic Map	9	q33	UniSTS

Wnt10a

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	82,065,311 - 82,065,832	NCBI	Rnor6.0
Rnor_5.0	9	81,828,481 - 81,829,002	UniSTS	Rnor5.0
RGSC_v3.4	9	74,136,772 - 74,137,293	UniSTS	RGSC3.4
Celera	9	73,934,040 - 73,934,561	UniSTS
Cytogenetic Map	9	q33	UniSTS

Wnt10a

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	82,055,381 - 82,055,517	NCBI	Rnor6.0
Rnor_5.0	9	81,817,927 - 81,818,063	UniSTS	Rnor5.0
RGSC_v3.4	9	74,126,218 - 74,126,354	UniSTS	RGSC3.4
Celera	9	73,924,209 - 73,924,345	UniSTS
Cytogenetic Map	9	q33	UniSTS

Wnt10a

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	82,054,303 - 82,055,492	NCBI	Rnor6.0
Rnor_5.0	9	81,816,849 - 81,818,038	UniSTS	Rnor5.0
RGSC_v3.4	9	74,125,140 - 74,126,329	UniSTS	RGSC3.4
Celera	9	73,923,131 - 73,924,320	UniSTS
Cytogenetic Map	9	q33	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1055222	93442944	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	25692342	92741406	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	27486155	88333183	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	29075079	83686404	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	29075079	122095297	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	29466970	107878528	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	37642351	82642351	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	37642351	82642351	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	41261034	90024806	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	41261034	98606834	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	41261034	102531865	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	46579769	91579769	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	46579769	91579769	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	46952427	83686153	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	47248965	94124663	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	54177542	99177542	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	60810298	82732466	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	61186278	106186278	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61730923	82890620	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	61730923	82890620	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	61730923	82890620	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	63270073	107878387	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	66757444	112943287	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	67451664	99920892	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	67451664	99920892	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	70241351	115241351	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	70942881	115942881	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	81411073	119983851	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	295
Count of miRNA genes:	176
Interacting mature miRNAs:	196
Transcripts:	ENSRNOT00000023878
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium
Low		2	8	10			21	1	29
Below cutoff	2		8	8	3	4	26	28	11	9	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000086375 ⟹ ENSRNOP00000072067

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	82,053,581 - 82,066,047 (+)	Ensembl

RefSeq Acc Id:

NM_001108227 ⟹ NP_001101697

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	76,349,931 - 76,362,400 (+)	NCBI
Rnor_6.0	9	82,053,581 - 82,066,047 (+)	NCBI
Rnor_5.0	9	81,816,108 - 81,829,217 (+)	NCBI
RGSC_v3.4	9	74,124,403 - 74,137,508 (+)	RGD
Celera	9	73,922,407 - 73,934,776 (+)	RGD

Sequence:

show sequence

TTCCTTCACCCTTTGCACGCGTTTCCCCTCCCCCCAACACACAGGGCGCTAGTCCTATACGGAC
TCAGTGGCCTCGGGGACGGAGCGTGCCACCCCCTGTCGTGACGTCACTTGGGGTAGAACCCTTA
GACACTACATGGGGGTTGGGGGGAGCAGAGCTCCCAGAGTCAGGACAGTTACTCACTCTCCAAG
CGGTGGGGCTGGGCCAGACAGTACCGCCCCCACCGCGCCCGCCTCGCACACCCTCGGAAGCGCA
GGCTCGCAGCGCGGCGCTGGGGGGGGGGGGCTGCTCCCCAGAACCTCGGCCTCCAGTCCCCAGC
CCGCTGTACCTCCTTACCCTCTAGAGGCCCCCCTTTACCCTCTAGAGGCATCAGGAGTTGTCGC
AAGGGGCCCTTGGGAAATTCCCTGGACCCCTGTGCCAGGAGGTGCCCGGTTCGCCCGCTCCCCA
TCCACCCCCCCGAGGGCGGTGCCCGGGGGCGCTGCCCCATGGAGCGGGGAGGCGGGCGCCGTCT
GCTGCGGGAGCTGTGACCTGAGTAGGAGCTGTGTGTCGCAGCCACCCCACCCCTGCCGATCATG
CGCCGGCGACCCTGGTTCGCCAGTCCCACTGGGCTGTGAGCCCCCCACTCCTGGCCTGTCACGG
CCCGCGCGCCATGGGCAGCGCCCACCCTCGCCCCTGGCTGCGGCTCCCACCAGGGCCCCAGCCG
CGGCCTGAGCTCTGGGCGCTCCTGTTCTTCCTACTGCTGCTGGCTGCTGCTGTGCCCAGGTCAG
CACCCAACGACATCCTGGGCCTCCGCCTACCCCCAGAGCCTGTGCTCAACGCCAACACAGTGTG
CCTGACATTGCCCGGCCTGAGCCGGCGGCAGATGGAGGTGTGTGTGCGTCACCCTGACGTGGCC
GCCTCTGCTATCCAGGGCATCCAGATCGCCATCCATGAGTGCCAGCATCAGTTCCGGGACCAGC
GCTGGAACTGTTCCAGCCTGGAGACTCGGAACAAAGTCCCCTACGAGAGCCCCATCTTCAGCAG
AGGTTTTCGAGAGAGTGCTTTCGCCTACGCCATAGCAGCTGCCGGGGTGGTGCACGCAGTGTCC
AACGCGTGCGCCCTGGGTAAACTGAAGGCTTGCGGTTGCGATGCCTCCAGGCGTGGGGACGAAG
AGGCCTTTCGTCGGAAGCTGCACCGCTTGCAGCTGGACGCCCTACAGCGCGGAAAGGGCTTGAG
CCACGGGGTCCCGGAGCACCCTGCCATACCCCCTGCCAGCCCAGGCCTGCAGGACTCCTGGGAG
TGGGGTGGCTGCAGTCCGGATGTGGGCTTTGGAGAACGCTTCTCCAAGGACTTTCTGGACTCCC
GAGAGCCTCACAGAGACATCCACGCACGCATGAGACTCCACAACAACCGTGTGGGCAGGCAGGC
GGTGATGGAGAACATGCGGCGAAAGTGCAAGTGCCACGGCACCTCAGGCAGCTGCCAGCTCAAG
ACCTGCTGGCAGGTGACGCCGGAGTTCCGCACAGTGGGGGCGCTGCTGCGCAACCGCTTCCACC
GCGCCACGCTCATCCGGCCGCACAACCGCAACGGTGGCCAGTTGGAGCCCGGCCTCGCGGGAGC
ACCCTCGCCAGCACCGGGTACTCCAGGGCTGCGCCGTAGGGCCAGTCACTCCGACCTGGTCTAC
TTTGAGAAATCGCCCGACTTCTGTGAGCGCGAGCCTCGTCTGGACTCGGCAGGCACTGTGGGGC
GCCTGTGCAATAAGAGCAGCACGGGTCCAGACAGCTGCGGCAGCATGTGCTGTGGCCGCGGTCA
CAACATTCTGCGCCAGACGCGCAGCGAGCGCTGCCACTGTCGTTTCCACTGGTGCTGCTTCGTG
GTCTGCGAAGAATGCCGCATCACTGAGTGGGTCAGCGTCTGCAAGTGAGCGGGCCCAAGCTCCT
CTGGGTCTCAAGAAAGGTTCTCCTCCTGGTGCCTGGCTTCTGCCATTAGCGACCTGGGCCAGGC
AGCAGCAGCCTTGGCTCCTGAGAGAGATGGTTGACTCTTAACAGCCCTGAGGGTCTGCAATCAC
CGGACAGTCCAGATCTGACTGACGTCCATCTACTCACTTCTGTGGGTTCCCCTCTTTCTGTTCC
TAGCTCAGGCAGGTGGGGGTGGTAGTGGAGACTGCCCCACACCCTAGGACATGTCACCAAAGCA
GCCCAGCCTGGCAGGCCCACCGCCTGTCAACTCTTCTCCCCTTCTCCAGCAGTGTTGGGCAATG
CACTGAAGCTGGTGGGCACTGGGAAGAAAACGCAGAAATGGGCGTCATTAGGCTGAAGTGTCTT
TCTAAGGGCTCTAGATCTCCCCCTCCACAGACTTCTGCTCCTGTCTTTTTCACTTAACGGATAT
TTATTTTACACTCTCTTTTTGACACTCTCTGGGGAAAAAGAAGCCTCTGGGAGTTTACAGGCTG
ATTAAGGGACATGGACAATAAACCAGTAAACACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101697	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75371	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001101697 ⟸ NM_001108227
- Peptide Label:	precursor
- UniProtKB:	D3ZRW5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSAHPRPWLRLPPGPQPRPELWALLFFLLLLAAAVPRSAPNDILGLRLPPEPVLNANTVCLTL PGLSRRQMEVCVRHPDVAASAIQGIQIAIHECQHQFRDQRWNCSSLETRNKVPYESPIFSRGFR ESAFAYAIAAAGVVHAVSNACALGKLKACGCDASRRGDEEAFRRKLHRLQLDALQRGKGLSHGV PEHPAIPPASPGLQDSWEWGGCSPDVGFGERFSKDFLDSREPHRDIHARMRLHNNRVGRQAVME NMRRKCKCHGTSGSCQLKTCWQVTPEFRTVGALLRNRFHRATLIRPHNRNGGQLEPGLAGAPSP APGTPGLRRRASHSDLVYFEKSPDFCEREPRLDSAGTVGRLCNKSSTGPDSCGSMCCGRGHNIL RQTRSERCHCRFHWCCFVVCEECRITEWVSVCK hide sequence

RefSeq Acc Id:

ENSRNOP00000072067 ⟸ ENSRNOT00000086375

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696761

Promoter ID:

EPDNEW_R7285

Type:

single initiation site

Name:

Wnt10a_1

Description:

Wnt family member 10A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	82,053,589 - 82,053,649	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307015	AgrOrtholog
Ensembl Genes	ENSRNOG00000052510	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000072067	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086375	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.30.2460.20	UniProtKB/TrEMBL
InterPro	Wnt10	UniProtKB/TrEMBL
	Wnt_C	UniProtKB/TrEMBL
	Wnt_grthfactor_CS	UniProtKB/TrEMBL
	Wnt_SF	UniProtKB/TrEMBL
KEGG Report	rno:316527	UniProtKB/TrEMBL
NCBI Gene	316527	ENTREZGENE
PANTHER	Wnt	UniProtKB/TrEMBL
Pfam	wnt	UniProtKB/TrEMBL
PhenoGen	Wnt10a	PhenoGen
PRINTS	WNT10PROTEIN	UniProtKB/TrEMBL
	WNTPROTEIN	UniProtKB/TrEMBL
PROSITE	WNT1	UniProtKB/TrEMBL
SMART	WNT1	UniProtKB/TrEMBL
UniProt	D3ZRW5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-29	Wnt10a	Wnt family member 10A	Wnt10a	wingless-type MMTV integration site family, member 10A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-14	Wnt10a	wingless-type MMTV integration site family, member 10A	Wnt10a	wingless related MMTV integration site 10a	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Wnt10a	wingless related MMTV integration site 10a	Wnt10a_predicted	wingless related MMTV integration site 10a (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Wnt10a_predicted	wingless related MMTV integration site 10a (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)