Coro1c (coronin 1C) - Rat Genome Database

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Gene: Coro1c (coronin 1C) Rattus norvegicus
Analyze
Symbol: Coro1c
Name: coronin 1C
RGD ID: 1564490
Description: Predicted to enable actin filament binding activity and small GTPase binding activity. Predicted to be involved in several processes, including negative regulation of cell-substrate adhesion; regulation of cell migration; and regulation of plasma membrane bounded cell projection organization. Predicted to be located in several cellular components, including endosome membrane; lamellipodium; and lateral plasma membrane. Predicted to be part of flotillin complex. Predicted to colocalize with vesicle. Orthologous to human CORO1C (coronin 1C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coronin, actin binding protein 1C; coronin-1C; LOC501841; RGD1564490; similar to Coronin, actin binding protein 1C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21242,712,960 - 42,785,179 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1242,712,991 - 42,785,179 (+)Ensembl
Rnor_6.01248,481,741 - 48,554,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,481,750 - 48,554,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,264,710 - 50,337,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,747,188 - 43,819,356 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1244,343,663 - 44,386,096 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:19913511   PMID:21423176   PMID:22364218   PMID:22871113   PMID:25074804   PMID:30220460   PMID:31505169  


Genomics

Comparative Map Data
Coro1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21242,712,960 - 42,785,179 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1242,712,991 - 42,785,179 (+)Ensembl
Rnor_6.01248,481,741 - 48,554,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,481,750 - 48,554,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,264,710 - 50,337,014 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,747,188 - 43,819,356 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1244,343,663 - 44,386,096 (+)NCBICelera
Cytogenetic Map12q16NCBI
CORO1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812108,645,109 - 108,731,518 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12108,645,109 - 108,731,526 (-)EnsemblGRCh38hg38GRCh38
GRCh3712109,038,885 - 109,125,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612107,563,014 - 107,649,424 (-)NCBINCBI36hg18NCBI36
Build 3412107,541,354 - 107,627,761NCBI
Celera12108,708,285 - 108,794,696 (-)NCBI
Cytogenetic Map12q24.11NCBI
HuRef12106,103,254 - 106,190,451 (-)NCBIHuRef
CHM1_112109,005,617 - 109,092,972 (-)NCBICHM1_1
T2T-CHM13v2.012108,619,700 - 108,706,142 (-)NCBI
Coro1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,980,500 - 114,046,767 (-)NCBIGRCm39mm39
GRCm39 Ensembl5113,980,497 - 114,046,819 (-)Ensembl
GRCm385113,842,439 - 113,908,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,842,436 - 113,908,758 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,292,448 - 114,358,715 (-)NCBIGRCm37mm9NCBIm37
MGSCv365114,103,438 - 114,169,705 (-)NCBImm8
Celera5110,944,005 - 111,011,106 (-)NCBICelera
Cytogenetic Map5FNCBI
Coro1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554559,901,702 - 9,953,098 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554559,905,243 - 9,952,504 (-)NCBIChiLan1.0ChiLan1.0
CORO1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112109,617,087 - 109,702,129 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12109,617,093 - 109,674,368 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012106,220,755 - 106,306,098 (-)NCBIMhudiblu_PPA_v0panPan3
CORO1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12618,161,707 - 18,236,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2618,176,441 - 18,236,652 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,565,220 - 17,640,232 (-)NCBI
ROS_Cfam_1.02618,505,707 - 18,580,881 (+)NCBI
ROS_Cfam_1.0 Ensembl2618,505,739 - 18,582,355 (+)Ensembl
UMICH_Zoey_3.12617,774,249 - 17,849,531 (-)NCBI
UNSW_CanFamBas_1.02618,496,473 - 18,573,357 (+)NCBI
UU_Cfam_GSD_1.02618,515,317 - 18,590,632 (+)NCBI
Coro1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,838,455 - 144,922,226 (+)NCBI
SpeTri2.0NW_004936769555,719 - 637,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CORO1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1442,062,893 - 42,145,125 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11442,062,468 - 42,145,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,605,492 - 44,688,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CORO1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111103,846,783 - 103,933,283 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl11103,845,292 - 103,999,993 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037141,165,870 - 141,272,991 (+)NCBIVero_WHO_p1.0
Coro1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474711,879,215 - 11,963,250 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474711,879,315 - 11,967,496 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D12Rat21  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21242,767,529 - 42,767,729 (+)MAPPERmRatBN7.2
Rnor_6.01248,536,412 - 48,536,609NCBIRnor6.0
Rnor_5.01250,319,372 - 50,319,569UniSTSRnor5.0
RGSC_v3.41243,801,711 - 43,801,909RGDRGSC3.4
RGSC_v3.41243,801,712 - 43,801,909UniSTSRGSC3.4
RGSC_v3.11243,665,099 - 43,665,297RGD
Celera1244,370,327 - 44,370,524UniSTS
RH 2.0 Map12473.0RGD
SHRSP x BN Map1251.8299RGD
Cytogenetic Map12q16UniSTS
BI278729  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21242,713,985 - 42,714,159 (+)MAPPERmRatBN7.2
Rnor_6.01248,482,915 - 48,483,088NCBIRnor6.0
Rnor_5.01250,265,875 - 50,266,048UniSTSRnor5.0
RGSC_v3.41243,748,174 - 43,748,347UniSTSRGSC3.4
Celera1244,316,836 - 44,317,009UniSTS
Cytogenetic Map12q16UniSTS
RH137525  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21242,784,877 - 42,785,113 (+)MAPPERmRatBN7.2
Rnor_6.01248,553,753 - 48,553,988NCBIRnor6.0
Rnor_5.01250,336,713 - 50,336,948UniSTSRnor5.0
RGSC_v3.41243,819,057 - 43,819,292UniSTSRGSC3.4
Celera1244,387,667 - 44,387,902UniSTS
Cytogenetic Map12q16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)122806443345899022Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)122806443346669029Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123210317445899022Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:182
Interacting mature miRNAs:224
Transcripts:ENSRNOT00000000886
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 38 47 37 19 37 1 3 74 35 33 11 1
Low 5 10 4 4 7 8 8 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000886   ⟹   ENSRNOP00000000886
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1242,713,015 - 42,785,179 (+)Ensembl
Rnor_6.0 Ensembl1248,481,750 - 48,554,052 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109613   ⟹   ENSRNOP00000095715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1242,713,050 - 42,785,023 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115919   ⟹   ENSRNOP00000094519
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1242,740,860 - 42,783,550 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116184   ⟹   ENSRNOP00000097058
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1242,712,991 - 42,778,465 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117394   ⟹   ENSRNOP00000094473
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1242,713,071 - 42,785,179 (+)Ensembl
RefSeq Acc Id: NM_001109327   ⟹   NP_001102797
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21242,740,866 - 42,783,307 (+)NCBI
Rnor_6.01248,509,742 - 48,552,182 (+)NCBI
Rnor_5.01250,264,710 - 50,337,014 (+)NCBI
RGSC_v3.41243,747,188 - 43,819,356 (+)RGD
Celera1244,343,663 - 44,386,096 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598446   ⟹   XP_017453935
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21242,712,960 - 42,785,173 (+)NCBI
Rnor_6.01248,481,741 - 48,554,054 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089710   ⟹   XP_038945638
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21242,713,328 - 42,785,179 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102797 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453935 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945638 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66764 (Get FASTA)   NCBI Sequence Viewer  
  EDM13959 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102797   ⟸   NM_001109327
- UniProtKB: G3V624 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453935   ⟸   XM_017598446
- Peptide Label: isoform X2
- UniProtKB: G3V624 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000886   ⟸   ENSRNOT00000000886
RefSeq Acc Id: XP_038945638   ⟸   XM_039089710
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000094519   ⟸   ENSRNOT00000115919
RefSeq Acc Id: ENSRNOP00000094473   ⟸   ENSRNOT00000117394
RefSeq Acc Id: ENSRNOP00000095715   ⟸   ENSRNOT00000109613
RefSeq Acc Id: ENSRNOP00000097058   ⟸   ENSRNOT00000116184
Protein Domains
DUF1899

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V624-F1-model_v2 AlphaFold G3V624 1-474 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698718
Promoter ID:EPDNEW_R9242
Type:initiation region
Name:Coro1c_1
Description:coronin 1C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01248,481,774 - 48,481,834EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564490 AgrOrtholog
BioCyc Gene G2FUF-18933 BioCyc
Ensembl Genes ENSRNOG00000000697 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000000886 UniProtKB/TrEMBL
  ENSRNOP00000094473 ENTREZGENE
Ensembl Transcript ENSRNOT00000000886 UniProtKB/TrEMBL
  ENSRNOT00000117394 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7932115 IMAGE-MGC_LOAD
InterPro CORO1C UniProtKB/TrEMBL
  Coronin UniProtKB/TrEMBL
  DUF1899 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:501841 UniProtKB/TrEMBL
MGC_CLONE MGC:188526 IMAGE-MGC_LOAD
NCBI Gene 501841 ENTREZGENE
PANTHER Coronin UniProtKB/TrEMBL
  PTHR10856:SF10 UniProtKB/TrEMBL
Pfam DUF1899 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Coro1c PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART DUF1899 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt B2RYG0_RAT UniProtKB/TrEMBL
  G3V624 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-20 Coro1c  coronin 1C  Coro1c  coronin, actin binding protein 1C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Coro1c  coronin, actin binding protein 1C  RGD1564490_predicted  similar to Coronin, actin binding protein 1C (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564490_predicted  similar to Coronin, actin binding protein 1C (predicted)  LOC501841  similar to Coronin, actin binding protein 1C  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501841  similar to Coronin, actin binding protein 1C      Symbol and Name status set to provisional 70820 PROVISIONAL