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Gene: Sox21 (SRY-box transcription factor 21) Rattus norvegicus
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Symbol: Sox21
Name: SRY-box transcription factor 21
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II proximal promoter sequence-specific DNA binding activity. Predicted to be involved in hair follicle development; positive regulation of transcription by RNA polymerase II; and stem cell differentiation. Orthologous to human SOX21 (SRY-box transcription factor 21); INTERACTS WITH bisphenol A; decabromodiphenyl ether; testosterone.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC306168; LOW QUALITY PROTEIN: transcription factor SOX-21; SRY (sex determining region Y)-box 21; SRY box 21; SRY-box containing gene 21; transcription factor SOX-21
Orthologs:
Homo sapiens (human) : SOX21 (SRY-box transcription factor 21)  HGNC  Alliance
Mus musculus (house mouse) : Sox21 (SRY (sex determining region Y)-box 21)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sox21 (SRY-box transcription factor 21)
Sus scrofa (pig) : SOX21 (SRY-box transcription factor 21)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.015103,438,674 - 103,441,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15103,440,212 - 103,441,030 (-)Ensembl
Rnor_5.015106,879,031 - 106,881,100 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.115103,137,749 - 103,215,460 (-)NCBI
Celera1594,143,028 - 94,146,136 (-)NCBICelera
Cytogenetic Map15q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression


Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sox21
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304724
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.