Klhl12 (kelch-like family member 12)

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Gene: Klhl12 (kelch-like family member 12) Rattus norvegicus

Analyze

Symbol:

Klhl12

Name:

kelch-like family member 12

RGD ID:

628717

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including COPII vesicle coating; mesenchymal cell differentiation; and protein monoubiquitination. Predicted to be located in centriolar satellite and intracellular membrane-bounded organelle. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human KLHL12 (kelch like family member 12); PARTICIPATES IN Wnt signaling, canonical pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C3ip1; CUL3-interacting protein 1; kelch-like 12; kelch-like 12 (Drosophila); kelch-like protein 12; kelch-like protein C3IP1; MGC93127

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KLHL12 (kelch like family member 12)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Klhl12 (kelch-like 12)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Klhl12 (kelch like family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KLHL12 (kelch like family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KLHL12 (kelch like family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Klhl12 (kelch like family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KLHL12 (kelch like family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KLHL12 (kelch like family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Klhl12 (kelch like family member 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Klhl12 (kelch-like 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	KLHL12 (kelch like family member 12)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	klhl12 (kelch-like family member 12)	Alliance	DIOPT (Ensembl Compara\|OMA\|TreeFam)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	45,899,913 - 45,933,648 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	13	45,899,928 - 45,933,643 (+)	Ensembl
Rnor_6.0	13	51,280,933 - 51,314,753 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,282,684 - 51,314,797 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	56,337,598 - 56,371,511 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,403,579 - 47,433,301 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	47,417,621 - 47,447,343 (+)	NCBI
Celera	13	46,231,068 - 46,260,077 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

butanal (ISO)

choline (ISO)

cisplatin (ISO)

cocaine (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

folic acid (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

oxaliplatin (EXP)

paracetamol (EXP)

pentanal (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

testosterone (EXP)

topotecan (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

COPII vesicle coating (IBA,IEA,ISO,ISS)

endoplasmic reticulum to Golgi vesicle-mediated transport (ISO,ISS)

neural crest cell development (IEA,ISO,ISS)

neural crest formation (IEA,ISO,ISS)

protein monoubiquitination (IBA,IEA,ISO,ISS)

Wnt signaling pathway (IEA,ISO,ISS)

Cellular Component

centriolar satellite (IEA,ISO)

COPII vesicle coat (IEA,ISO,ISS)

COPII-coated ER to Golgi transport vesicle (IBA,ISO,ISS)

Cul3-RING ubiquitin ligase complex (IEA,ISO,ISS)

intracellular membrane-bounded organelle (ISO)

Molecular Function

identical protein binding (IEA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Wnt signaling, canonical pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3.	RGD automated data pipeline
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:16189514	PMID:20970343	PMID:22358839	PMID:24334870	PMID:25416956	PMID:27107012	PMID:27716508

Genomics

Comparative Map Data

Klhl12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	45,899,913 - 45,933,648 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	13	45,899,928 - 45,933,643 (+)	Ensembl
Rnor_6.0	13	51,280,933 - 51,314,753 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,282,684 - 51,314,797 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	56,337,598 - 56,371,511 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,403,579 - 47,433,301 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	47,417,621 - 47,447,343 (+)	NCBI
Celera	13	46,231,068 - 46,260,077 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

KLHL12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	202,891,120 - 202,928,599 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	202,891,116 - 202,928,636 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	202,860,248 - 202,897,727 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	201,126,853 - 201,162,994 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	199,591,886 - 199,628,028	NCBI
Celera	1	175,989,447 - 176,025,617 (-)	NCBI
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	174,025,817 - 174,061,990 (-)	NCBI		HuRef
CHM1_1	1	204,282,479 - 204,318,606 (-)	NCBI		CHM1_1

Klhl12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	134,383,240 - 134,418,618 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	1	134,383,269 - 134,418,756 (+)	Ensembl
GRCm38	1	134,455,495 - 134,490,880 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	134,455,531 - 134,491,018 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	136,352,132 - 136,387,450 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	136,271,966 - 136,307,284 (+)	NCBI			mm8
Celera	1	137,062,147 - 137,097,576 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI

Klhl12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	38,900,022 - 38,931,374 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	38,903,233 - 38,931,756 (-)	NCBI	ChiLan1.0	ChiLan1.0

KLHL12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	182,785,420 - 182,821,965 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	182,785,420 - 182,821,965 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	178,490,467 - 178,527,919 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

KLHL12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	256,814 - 284,132 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	311,438 - 338,723 (+)	NCBI
ROS_Cfam_1.0	7	266,263 - 293,556 (+)	NCBI
ROS_Cfam_1.0 Ensembl	7	249,707 - 293,556 (+)	Ensembl
UMICH_Zoey_3.1	7	254,937 - 282,247 (+)	NCBI
UNSW_CanFamBas_1.0	7	364,012 - 391,323 (+)	NCBI
UU_Cfam_GSD_1.0	7	386,991 - 414,305 (+)	NCBI

Klhl12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	72,446,749 - 72,479,474 (+)	NCBI
SpeTri2.0	NW_004936567	1,681,421 - 1,714,150 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KLHL12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	10	24,869,816 - 24,902,981 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	29,227,964 - 29,260,937 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KLHL12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	26,479,798 - 26,516,293 (+)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666055	27,256,921 - 27,293,054 (+)	NCBI	Vero_WHO_p1.0

Klhl12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624807	7,919,216 - 7,948,254 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH129486

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	9,621,420 - 9,621,604 (+)	MAPPER	mRatBN7.2
mRatBN7.2	13	45,916,257 - 45,916,441 (-)	MAPPER	mRatBN7.2
mRatBN7.2	13	45,916,257 - 45,916,441 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	9,621,420 - 9,621,604 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	10,275,097 - 10,275,280	NCBI	Rnor6.0
Rnor_6.0	13	51,297,241 - 51,297,424	NCBI	Rnor6.0
Rnor_5.0	13	56,353,905 - 56,354,088	UniSTS	Rnor5.0
Rnor_5.0	20	12,464,410 - 12,464,593	UniSTS	Rnor5.0
RGSC_v3.4	13	47,416,575 - 47,416,758	UniSTS	RGSC3.4
RGSC_v3.4	20	9,960,064 - 9,960,247	UniSTS	RGSC3.4
Celera	20	11,135,285 - 11,135,468	UniSTS
Celera	13	46,244,064 - 46,244,247	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH129888

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	45,916,291 - 45,916,488 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	9,621,393 - 9,621,570 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	51,297,275 - 51,297,471	NCBI	Rnor6.0
Rnor_5.0	13	56,353,939 - 56,354,135	UniSTS	Rnor5.0
RGSC_v3.4	13	47,416,609 - 47,416,805	UniSTS	RGSC3.4
Celera	13	46,244,098 - 46,244,294	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH137226

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	45,933,305 - 45,933,512 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	51,314,411 - 51,314,617	NCBI	Rnor6.0
Rnor_5.0	13	56,371,174 - 56,371,380	UniSTS	Rnor5.0
RGSC_v3.4	13	47,434,271 - 47,434,477	UniSTS	RGSC3.4
Celera	13	46,261,047 - 46,261,253	UniSTS
RH 3.4 Map	13	171.4	UniSTS
Cytogenetic Map	13	q13	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	9313465	54313465	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	9313465	54313465	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	11929449	46193066	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	14915655	59915655	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	15158722	60158722	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	17694436	53050594	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	22301875	67301875	Rat
70170	Eae14	Experimental allergic encephalomyelitis QTL 14		0.0024	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	23203448	68203448	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	23692969	68692969	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	23692969	68692969	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	31241331	58363171	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	43437904	47841255	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	43720770	62022792	Rat
12879444	Bp397	Blood pressure QTL 397			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45049404	90049404	Rat
12879472	Bp399	Blood pressure QTL 399			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45228358	47841255	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45514719	90514719	Rat
12879441	Bp396	Blood pressure QTL 396			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	45699983	90699983	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	114
Count of miRNA genes:	104
Interacting mature miRNAs:	108
Transcripts:	ENSRNOT00000005832
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	33	40	25	18	25	1	3	74	35	41	11	1
Low		10	17	16	1	16	7	8					7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_153730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ133126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000005832 ⟹ ENSRNOP00000005832

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,899,928 - 45,933,643 (+)	Ensembl
Rnor_6.0 Ensembl	13	51,282,684 - 51,314,797 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119533 ⟹ ENSRNOP00000086049

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,901,006 - 45,932,356 (+)	Ensembl

RefSeq Acc Id:

NM_153730 ⟹ NP_714952

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,903,263 - 45,932,336 (+)	NCBI
Rnor_6.0	13	51,284,245 - 51,313,441 (+)	NCBI
Rnor_5.0	13	56,337,598 - 56,371,511 (+)	NCBI
RGSC_v3.4	13	47,403,579 - 47,433,301 (+)	RGD
Celera	13	46,231,068 - 46,260,077 (+)	RGD

Sequence:

show sequence

GCGCTTGATGGGCGGCATTATGGCCCCTAAAGACATAATGACAAATACTCACGCCAAGTCCATC
CTCAACTCAATGAACTCCCTCAGGAAGAGCAATACCCTCTGTGACGTGACCTTGAGAGTGGAGC
AGAAAGACTTCCCTGCCCACCGGATTGTGCTGGCTGCCTGCAGCGATTATTTCTGTGCCATGTT
CACTAGTGAGCTTTCAGAGAAGGGGAAGCCATATGTTGACATTCAAGGTTTAACTGCTTCTACA
ATGGAAATCCTGTTGGACTTCGTGTATACAGAAACAGTACATGTGACAGTGGAGAATGTTCAAG
AACTGCTCCCTGCAGCCTGTCTTCTCCAGTTGAAAGGTGTAAAACAAGCCTGCTGTGAGTTCTT
AGAAAGTCAGTTGGATCCATCTAATTGCCTGGGTATCAGGGATTTTGCTGAAACTCACAATTGC
GTTGACCTGATGCAAGCAGCTGAGGTTTTTAGCCAGAAGCATTTTCCTGAAGTGGTACAGCACG
AAGAGTTCATTCTTCTGAGTCAAGGAGAGGTGGAGAAGCTAATCAAGTGCGATGAGATTCAGGT
GGATTCTGAAGAGCCAGTCTTTGAGGCTGTCATCAACTGGGTGAAGCATGCCAAGAAGGAGCGA
GAGGAGTCTTTGCCTGACCTCCTGCAGTATGTTCGGATGCCCCTGCTGACCCCTAGGTACATTA
CAGATGTGATTGATGCTGAGCCTTTTATCCGCTGTAGTTTACAGTGCAGGGACCTAGTTGATGA
AGCCAAGAAGTTTCACCTGAGGCCTGAACTTCGGAGTCAGATGCAAGGACCCAGGACAAGAGCC
CGACTAGGAGCCAATGAAGTGCTTCTGGTGGTTGGGGGCTTCGGAAGCCAGCAGTCTCCTATTG
ATGTGGTAGAGAAATATGACCCCAAGACACAGGAGTGGAGCTTTTTGCCAAGTATCACTCGCAA
GAGACGGTATGTGGCCTCGGTTTCCTTACATGATCGGATCTATGTGATTGGTGGCTATGATGGC
CGTTCCCGCCTCAGTTCAGTGGAGTGTCTAGACTACACAGCAGATGAAGACGGAGTGTGGTACT
CTGTGGCCCCTATGAATGTGCGGCGAGGCCTTGCTGGAGCCACCACACTGGGAGATATGATTTA
CGTTTCTGGAGGCTTTGATGGAAGCAGGCGTCATACAAGTATGGAGCGGTATGACCCAAACATT
GACCAGTGGAGTATGCTGGGAGATATGCAGACAGCTCGAGAGGGCGCGGGACTAGTGGTGGCCA
GCGGCATAATCTACTGTCTAGGAGGATATGATGGCTTGAATATATTAAATTCAGTTGAGAAATA
TGATCCCCATACAGGACACTGGACTAATGTTACGCCTATGGCCACCAAGCGTTCTGGTGCTGGA
GTAGCCCTACTGAATGACCATATTTATGTGGTGGGAGGGTTCGATGGTACAGCCCACCTTTCTT
CTGTTGAAGCTTATAACATTCGCACGGATTCCTGGACAACTGTCACAAGTATGACCACACCACG
ATGCTATGTAGGGGCCACAGTGCTTCGAGGGAGACTCTATGCAATCGCAGGATACGATGGGAAT
TCTCTGCTGAGCAGCATTGAGTGTTATGACCCTATCATCGACAGCTGGGAAGTAGTGGCCTCCA
TGGGAACCCAGCGTTGTGACGCTGGTGTGTGTGTTCTCCGAGAAAAGTAACTGTTATTTGGACA
CCAGCTGGGAACAGTTTGTGGGAGAATGAAGGATCCTTTCCAGAATGTTCACTTCTCACTGTGT
GCACAGGGCGATTACAGGCACCAGTGCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

XM_006249843 ⟹ XP_006249905

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,913 - 45,933,648 (+)	NCBI
Rnor_6.0	13	51,280,938 - 51,314,748 (+)	NCBI
Rnor_5.0	13	56,337,598 - 56,371,511 (+)	NCBI

Sequence:

show sequence

AGAGTTTACCACGGAGACTGCTCCGCGGCGGCTGGTCCGGGCGGCTGCGGCGGCGGCGCTCTGG
CTCCTCAGCCGCCTGCGAGCCCCGCGCCCAGCACCTCCGCTCGGGCGGCCCGGGAGCCCTGCGC
TTGATGGGCGGCATTATGGCCCCTAAAGACATAATGACAAATACTCACGCCAAGTCCATCCTCA
ACTCAATGAACTCCCTCAGGAAGAGCAATACCCTCTGTGACGTGACCTTGAGAGTGGAGCAGAA
AGACTTCCCTGCCCACCGGATTGTGCTGGCTGCCTGCAGCGATTATTTCTGTGCCATGTTCACT
AGTGAGGTAAATGCGAGTCTTTGCTATCTTTCAGAGAAGGGGAAGCCATATGTTGACATTCAAG
GTTTAACTGCTTCTACAATGGAAATCCTGTTGGACTTCGTGTATACAGAAACAGTACATGTGAC
AGTGGAGAATGTTCAAGAACTGCTCCCTGCAGCCTGTCTTCTCCAGTTGAAAGGTGTAAAACAA
GCCTGCTGTGAGTTCTTAGAAAGTCAGTTGGATCCATCTAATTGCCTGGGTATCAGGGATTTTG
CTGAAACTCACAATTGCGTTGACCTGATGCAAGCAGCTGAGGTTTTTAGCCAGAAGCATTTTCC
TGAAGTGGTACAGCACGAAGAGTTCATTCTTCTGAGTCAAGGAGAGGTGGAGAAGCTAATCAAG
TGCGATGAGATTCAGGTGGATTCTGAAGAGCCAGTCTTTGAGGCTGTCATCAACTGGGTGAAGC
ATGCCAAGAAGGAGCGAGAGGAGTCTTTGCCTGACCTCCTGCAGTATGTTCGGATGCCCCTGCT
GACCCCTAGGTACATTACAGATGTGATTGATGCTGAGCCTTTTATCCGCTGTAGTTTACAGTGC
AGGGACCTAGTTGATGAAGCCAAGAAGTTTCACCTGAGGCCTGAACTTCGGAGTCAGATGCAAG
GACCCAGGACAAGAGCCCGACTAGGAGCCAATGAAGTGCTTCTGGTGGTTGGGGGCTTCGGAAG
CCAGCAGTCTCCTATTGATGTGGTAGAGAAATATGACCCCAAGACACAGGAGTGGAGCTTTTTG
CCAAGTATCACTCGCAAGAGACGGTATGTGGCCTCGGTTTCCTTACATGATCGGATCTATGTGA
TTGGTGGCTATGATGGCCGTTCCCGCCTCAGTTCAGTGGAGTGTCTAGACTACACAGCAGATGA
AGACGGAGTGTGGTACTCTGTGGCCCCTATGAATGTGCGGCGAGGCCTTGCTGGAGCCACCACA
CTGGGAGATATGATTTACGTTTCTGGAGGCTTTGATGGAAGCAGGCGTCATACAAGTATGGAGC
GGTATGACCCAAACATTGACCAGTGGAGTATGCTGGGAGATATGCAGACAGCTCGAGAGGGCGC
GGGACTAGTGGTGGCCAGCGGCATAATCTACTGTCTAGGAGGATATGATGGCTTGAATATATTA
AATTCAGTTGAGAAATATGATCCCCATACAGGACACTGGACTAATGTTACGCCTATGGCCACCA
AGCGTTCTGGTGCTGGAGTAGCCCTACTGAATGACCATATTTATGTGGTGGGAGGGTTCGATGG
TACAGCCCACCTTTCTTCTGTTGAAGCTTATAACATTCGCACGGATTCCTGGACAACTGTCACA
AGTATGACCACACCACGATGCTATGTAGGGGCCACAGTGCTTCGAGGGAGACTCTATGCAATCG
CAGGATACGATGGGAATTCTCTGCTGAGCAGCATTGAGTGTTATGACCCTATCATCGACAGCTG
GGAAGTAGTGGCCTCCATGGGAACCCAGCGTTGTGACGCTGGTGTGTGTGTTCTCCGAGAAAAG
TAACTGTTATTTGGACACCAGCTGGGAACAGTTTGTGGGAGAATGAAGGATCCTTTCCAGAATG
TTCACTTCTCACTGTGTGCACAGGGCGATTACAGGCACCAGTGCTGTGATGATTGTACTTATTT
GACGCACATGCTCCTTCTCACTGGCCATCCTGCTCAGACGCACGGGGAACAGGTCCTCAAGGGA
AGAGAATGCACACACGGATCAGAGACACAGATCATGGCTCTCTGTGGTCTGAGGAGCACTTTCT
TCTGTTTGTAACTTACCATGTGCTTGGGAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTATGTGTTGTGCCTCGTATATTGCAGAGAATTAAGGTGAGTATGGCCTACTAGA
TGTGGGCAGTGTCCATCCTGTGTGATTGGAAGGATATCAGTTTATATAAGCTTGGTAAAATGAA
AGTCTTTTCTCCACTCAGAAGCAAAAATATCTTTTCTAAATACAGAGGTAGCTCGAGGCACCAC
AGTTCCTTTCTGTAGGAAACCAAGAGATCACTGTCAACATTTGAGAGGCCAAGAAGGAAGATTC
GTGCTGTTCTCACTTAGGGAGACATAGTTGGCACAGAGATTTGAGTAAGTGGCAGGAGCTGAAT
GGAATGTGGGTGAACCCAGAAAATCACTGAAGTGTGAACTGGAAGGCTGGCAAGGACATATTAT
CTGACTCCATGGTCTTTCTAATGTAAAATGTTGCACCATCTTGGTTGGCACTGGAGACTGAGAG
ATTAACAGTGGAAAAGGTTAGAATAAGAAATGCTGTAAATGTGCAGAGTTCAACATACCTGTGG
TAAACTAGAAATATCTGTGATTTTACAATCATCTTAGTCCCTGCCAGGGCTCCCATAGCCGTGG
CAGTATTTGTCTTATGTGGGTGAAAAGACCATCTTCCTGGTGAATCAAGTGCTACCACGTTACT
TCGCCTCCACACTATTTATTTGGGGATGGGTGGGGTTGCTGCAGCCTAGTAGTTCAGGTACTGA
TTACTGCCCTGTTGTTTTAAGGGCGCACTTCCACTGAGGAGTGTTTAATACTGCTGTGTGGTAC
GTTCAGTTCTCTTCCTGCTATATCTTCTGTACTTGTCATTACAGTGTATTTTATTCATCCTGGA
ACAAAATAATCAAGGACAATTGAAAATCTTTTGTTAGTTTCCGCACCTCTGCCAATGTTCCCGA
GCTGCCATTCTGGCTCCTCTGTCATGGTGAATTCTGCAGTTACTGGTATAGCAAATAGGAGAGT
GTGGGAGCCGGAACTGGGCTGCACTTGCCTTTTGCTCTGGAATCCCACTTTTCCTCTCTCCCTG
AATTGTGTTTGCTGATAGAGTTAATTTCCTTTGTATTTTTTTAAGAAAACATTAAAAATGAACT
GTCTCAAATGGC

hide sequence

RefSeq Acc Id:

XM_006249844 ⟹ XP_006249906

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,913 - 45,933,648 (+)	NCBI
Rnor_6.0	13	51,280,938 - 51,314,748 (+)	NCBI
Rnor_5.0	13	56,337,598 - 56,371,511 (+)	NCBI

Sequence:

show sequence

AGAGTTTACCACGGAGACTGCTCCGCGGCGGCTGGTCCGGGCGGCTGCGGCGGCGGCGCTCTGG
CTCCTCAGCCGCCTGCGAGCCCCGCGCCCAGCACCTCCGCTCGGGCGGCCCGGGAGCCCTGGTG
AGTGGGCGCGGCCCTGACACGCGCCCTTTCCCTTCTGCCCTCAGCCGGGGACGCGGCCTTCCCC
CAGCCCTGGTACCCCTTGGTCGGGAGGAGACGCGCTGGGGCGCTGCAGGCAGGCTTAGTGCTGC
CTTCTCAGCTTCTCCTGCGCAGCTCCCGCCTGCCCCAGAGAAGGTTTAACCTGGAAGGAAAGAA
TTCAGCCGAGAAACAGTTAAGGGGACATTTATTTAGCAGAGCTACACACTCCAAAGATTGGAGT
GGGCTTCCTCCGAAGCGCTTGATGGGCGGCATTATGGCCCCTAAAGACATAATGACAAATACTC
ACGCCAAGTCCATCCTCAACTCAATGAACTCCCTCAGGAAGAGCAATACCCTCTGTGACGTGAC
CTTGAGAGTGGAGCAGAAAGACTTCCCTGCCCACCGGATTGTGCTGGCTGCCTGCAGCGATTAT
TTCTGTGCCATGTTCACTAGTGAGGTAAATGCGAGTCTTTGCTATCTTTCAGAGAAGGGGAAGC
CATATGTTGACATTCAAGGTTTAACTGCTTCTACAATGGAAATCCTGTTGGACTTCGTGTATAC
AGAAACAGTACATGTGACAGTGGAGAATGTTCAAGAACTGCTCCCTGCAGCCTGTCTTCTCCAG
TTGAAAGGTGTAAAACAAGCCTGCTGTGAGTTCTTAGAAAGTCAGTTGGATCCATCTAATTGCC
TGGGTATCAGGGATTTTGCTGAAACTCACAATTGCGTTGACCTGATGCAAGCAGCTGAGGTTTT
TAGCCAGAAGCATTTTCCTGAAGTGGTACAGCACGAAGAGTTCATTCTTCTGAGTCAAGGAGAG
GTGGAGAAGCTAATCAAGTGCGATGAGATTCAGGTGGATTCTGAAGAGCCAGTCTTTGAGGCTG
TCATCAACTGGGTGAAGCATGCCAAGAAGGAGCGAGAGGAGTCTTTGCCTGACCTCCTGCAGTA
TGTTCGGATGCCCCTGCTGACCCCTAGGTACATTACAGATGTGATTGATGCTGAGCCTTTTATC
CGCTGTAGTTTACAGTGCAGGGACCTAGTTGATGAAGCCAAGAAGTTTCACCTGAGGCCTGAAC
TTCGGAGTCAGATGCAAGGACCCAGGACAAGAGCCCGACTAGGAGCCAATGAAGTGCTTCTGGT
GGTTGGGGGCTTCGGAAGCCAGCAGTCTCCTATTGATGTGGTAGAGAAATATGACCCCAAGACA
CAGGAGTGGAGCTTTTTGCCAAGTATCACTCGCAAGAGACGGTATGTGGCCTCGGTTTCCTTAC
ATGATCGGATCTATGTGATTGGTGGCTATGATGGCCGTTCCCGCCTCAGTTCAGTGGAGTGTCT
AGACTACACAGCAGATGAAGACGGAGTGTGGTACTCTGTGGCCCCTATGAATGTGCGGCGAGGC
CTTGCTGGAGCCACCACACTGGGAGATATGATTTACGTTTCTGGAGGCTTTGATGGAAGCAGGC
GTCATACAAGTATGGAGCGGTATGACCCAAACATTGACCAGTGGAGTATGCTGGGAGATATGCA
GACAGCTCGAGAGGGCGCGGGACTAGTGGTGGCCAGCGGCATAATCTACTGTCTAGGAGGATAT
GATGGCTTGAATATATTAAATTCAGTTGAGAAATATGATCCCCATACAGGACACTGGACTAATG
TTACGCCTATGGCCACCAAGCGTTCTGGTGCTGGAGTAGCCCTACTGAATGACCATATTTATGT
GGTGGGAGGGTTCGATGGTACAGCCCACCTTTCTTCTGTTGAAGCTTATAACATTCGCACGGAT
TCCTGGACAACTGTCACAAGTATGACCACACCACGATGCTATGTAGGGGCCACAGTGCTTCGAG
GGAGACTCTATGCAATCGCAGGATACGATGGGAATTCTCTGCTGAGCAGCATTGAGTGTTATGA
CCCTATCATCGACAGCTGGGAAGTAGTGGCCTCCATGGGAACCCAGCGTTGTGACGCTGGTGTG
TGTGTTCTCCGAGAAAAGTAACTGTTATTTGGACACCAGCTGGGAACAGTTTGTGGGAGAATGA
AGGATCCTTTCCAGAATGTTCACTTCTCACTGTGTGCACAGGGCGATTACAGGCACCAGTGCTG
TGATGATTGTACTTATTTGACGCACATGCTCCTTCTCACTGGCCATCCTGCTCAGACGCACGGG
GAACAGGTCCTCAAGGGAAGAGAATGCACACACGGATCAGAGACACAGATCATGGCTCTCTGTG
GTCTGAGGAGCACTTTCTTCTGTTTGTAACTTACCATGTGCTTGGGAGAATGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTGCCTCGTATATTGCAGAGAATTAAGG
TGAGTATGGCCTACTAGATGTGGGCAGTGTCCATCCTGTGTGATTGGAAGGATATCAGTTTATA
TAAGCTTGGTAAAATGAAAGTCTTTTCTCCACTCAGAAGCAAAAATATCTTTTCTAAATACAGA
GGTAGCTCGAGGCACCACAGTTCCTTTCTGTAGGAAACCAAGAGATCACTGTCAACATTTGAGA
GGCCAAGAAGGAAGATTCGTGCTGTTCTCACTTAGGGAGACATAGTTGGCACAGAGATTTGAGT
AAGTGGCAGGAGCTGAATGGAATGTGGGTGAACCCAGAAAATCACTGAAGTGTGAACTGGAAGG
CTGGCAAGGACATATTATCTGACTCCATGGTCTTTCTAATGTAAAATGTTGCACCATCTTGGTT
GGCACTGGAGACTGAGAGATTAACAGTGGAAAAGGTTAGAATAAGAAATGCTGTAAATGTGCAG
AGTTCAACATACCTGTGGTAAACTAGAAATATCTGTGATTTTACAATCATCTTAGTCCCTGCCA
GGGCTCCCATAGCCGTGGCAGTATTTGTCTTATGTGGGTGAAAAGACCATCTTCCTGGTGAATC
AAGTGCTACCACGTTACTTCGCCTCCACACTATTTATTTGGGGATGGGTGGGGTTGCTGCAGCC
TAGTAGTTCAGGTACTGATTACTGCCCTGTTGTTTTAAGGGCGCACTTCCACTGAGGAGTGTTT
AATACTGCTGTGTGGTACGTTCAGTTCTCTTCCTGCTATATCTTCTGTACTTGTCATTACAGTG
TATTTTATTCATCCTGGAACAAAATAATCAAGGACAATTGAAAATCTTTTGTTAGTTTCCGCAC
CTCTGCCAATGTTCCCGAGCTGCCATTCTGGCTCCTCTGTCATGGTGAATTCTGCAGTTACTGG
TATAGCAAATAGGAGAGTGTGGGAGCCGGAACTGGGCTGCACTTGCCTTTTGCTCTGGAATCCC
ACTTTTCCTCTCTCCCTGAATTGTGTTTGCTGATAGAGTTAATTTCCTTTGTATTTTTTTAAGA
AAACATTAAAAATGAACTGTCTCAAATGGC

hide sequence

RefSeq Acc Id:

XM_006249845 ⟹ XP_006249907

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,914 - 45,933,648 (+)	NCBI
Rnor_6.0	13	51,280,933 - 51,314,748 (+)	NCBI
Rnor_5.0	13	56,337,598 - 56,371,511 (+)	NCBI

Sequence:

show sequence

AGCCTAGAGTTTACCACGGAGACTGCTCCGCGGCGGCTGGTCCGGGCGGCTGCGGCGGCGGCGC
TCTGGCTCCTCAGCCGCCTGCGAGCCCCGCGCCCAGCACCTCCGCTCGGGCGGCCCGGGAGCCC
TGCGCTTGATGGGCGGCATTATGGCCCCTAAAGACATAATGACAAATACTCACGCCAAGTCCAT
CCTCAACTCAATGAACTCCCTCAGGAAGAGCAATACCCTCTGTGACGTGACCTTGAGAGTGGAG
CAGAAAGACTTCCCTGCCCACCGGATTGTGCTGGCTGCCTGCAGCGATTATTTCTGTGCCATGT
TCACTAGTGAGCTTTCAGAGAAGGGGAAGCCATATGTTGACATTCAAGGTTTAACTGCTTCTAC
AATGGAAATCCTGTTGGACTTCGTGTATACAGAAACAGTACATGTGACAGTGGAGAATGTTCAA
GAACTGCTCCCTGCAGCCTGTCTTCTCCAGTTGAAAGGTGTAAAACAAGCCTGCTGTGAGTTCT
TAGAAAGTCAGTTGGATCCATCTAATTGCCTGGGTATCAGGGATTTTGCTGAAACTCACAATTG
CGTTGACCTGATGCAAGCAGCTGAGGTTTTTAGCCAGAAGCATTTTCCTGAAGTGGTACAGCAC
GAAGAGTTCATTCTTCTGAGTCAAGGAGAGGTGGAGAAGCTAATCAAGTGCGATGAGATTCAGG
TGGATTCTGAAGAGCCAGTCTTTGAGGCTGTCATCAACTGGGTGAAGCATGCCAAGAAGGAGCG
AGAGGAGTCTTTGCCTGACCTCCTGCAGTATGTTCGGATGCCCCTGCTGACCCCTAGGTACATT
ACAGATGTGATTGATGCTGAGCCTTTTATCCGCTGTAGTTTACAGTGCAGGGACCTAGTTGATG
AAGCCAAGAAGTTTCACCTGAGGCCTGAACTTCGGAGTCAGATGCAAGGACCCAGGACAAGAGC
CCGACTAGGAGCCAATGAAGTGCTTCTGGTGGTTGGGGGCTTCGGAAGCCAGCAGTCTCCTATT
GATGTGGTAGAGAAATATGACCCCAAGACACAGGAGTGGAGCTTTTTGCCAAGTATCACTCGCA
AGAGACGGTATGTGGCCTCGGTTTCCTTACATGATCGGATCTATGTGATTGGTGGCTATGATGG
CCGTTCCCGCCTCAGTTCAGTGGAGTGTCTAGACTACACAGCAGATGAAGACGGAGTGTGGTAC
TCTGTGGCCCCTATGAATGTGCGGCGAGGCCTTGCTGGAGCCACCACACTGGGAGATATGATTT
ACGTTTCTGGAGGCTTTGATGGAAGCAGGCGTCATACAAGTATGGAGCGGTATGACCCAAACAT
TGACCAGTGGAGTATGCTGGGAGATATGCAGACAGCTCGAGAGGGCGCGGGACTAGTGGTGGCC
AGCGGCATAATCTACTGTCTAGGAGGATATGATGGCTTGAATATATTAAATTCAGTTGAGAAAT
ATGATCCCCATACAGGACACTGGACTAATGTTACGCCTATGGCCACCAAGCGTTCTGGTGCTGG
AGTAGCCCTACTGAATGACCATATTTATGTGGTGGGAGGGTTCGATGGTACAGCCCACCTTTCT
TCTGTTGAAGCTTATAACATTCGCACGGATTCCTGGACAACTGTCACAAGTATGACCACACCAC
GATGCTATGTAGGGGCCACAGTGCTTCGAGGGAGACTCTATGCAATCGCAGGATACGATGGGAA
TTCTCTGCTGAGCAGCATTGAGTGTTATGACCCTATCATCGACAGCTGGGAAGTAGTGGCCTCC
ATGGGAACCCAGCGTTGTGACGCTGGTGTGTGTGTTCTCCGAGAAAAGTAACTGTTATTTGGAC
ACCAGCTGGGAACAGTTTGTGGGAGAATGAAGGATCCTTTCCAGAATGTTCACTTCTCACTGTG
TGCACAGGGCGATTACAGGCACCAGTGCTGTGATGATTGTACTTATTTGACGCACATGCTCCTT
CTCACTGGCCATCCTGCTCAGACGCACGGGGAACAGGTCCTCAAGGGAAGAGAATGCACACACG
GATCAGAGACACAGATCATGGCTCTCTGTGGTCTGAGGAGCACTTTCTTCTGTTTGTAACTTAC
CATGTGCTTGGGAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG
TTGTGCCTCGTATATTGCAGAGAATTAAGGTGAGTATGGCCTACTAGATGTGGGCAGTGTCCAT
CCTGTGTGATTGGAAGGATATCAGTTTATATAAGCTTGGTAAAATGAAAGTCTTTTCTCCACTC
AGAAGCAAAAATATCTTTTCTAAATACAGAGGTAGCTCGAGGCACCACAGTTCCTTTCTGTAGG
AAACCAAGAGATCACTGTCAACATTTGAGAGGCCAAGAAGGAAGATTCGTGCTGTTCTCACTTA
GGGAGACATAGTTGGCACAGAGATTTGAGTAAGTGGCAGGAGCTGAATGGAATGTGGGTGAACC
CAGAAAATCACTGAAGTGTGAACTGGAAGGCTGGCAAGGACATATTATCTGACTCCATGGTCTT
TCTAATGTAAAATGTTGCACCATCTTGGTTGGCACTGGAGACTGAGAGATTAACAGTGGAAAAG
GTTAGAATAAGAAATGCTGTAAATGTGCAGAGTTCAACATACCTGTGGTAAACTAGAAATATCT
GTGATTTTACAATCATCTTAGTCCCTGCCAGGGCTCCCATAGCCGTGGCAGTATTTGTCTTATG
TGGGTGAAAAGACCATCTTCCTGGTGAATCAAGTGCTACCACGTTACTTCGCCTCCACACTATT
TATTTGGGGATGGGTGGGGTTGCTGCAGCCTAGTAGTTCAGGTACTGATTACTGCCCTGTTGTT
TTAAGGGCGCACTTCCACTGAGGAGTGTTTAATACTGCTGTGTGGTACGTTCAGTTCTCTTCCT
GCTATATCTTCTGTACTTGTCATTACAGTGTATTTTATTCATCCTGGAACAAAATAATCAAGGA
CAATTGAAAATCTTTTGTTAGTTTCCGCACCTCTGCCAATGTTCCCGAGCTGCCATTCTGGCTC
CTCTGTCATGGTGAATTCTGCAGTTACTGGTATAGCAAATAGGAGAGTGTGGGAGCCGGAACTG
GGCTGCACTTGCCTTTTGCTCTGGAATCCCACTTTTCCTCTCTCCCTGAATTGTGTTTGCTGAT
AGAGTTAATTTCCTTTGTATTTTTTTAAGAAAACATTAAAAATGAACTGTCTCAAATGGC

hide sequence

RefSeq Acc Id:

XM_006249846 ⟹ XP_006249908

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,915 - 45,933,648 (+)	NCBI
Rnor_6.0	13	51,280,942 - 51,314,748 (+)	NCBI
Rnor_5.0	13	56,337,598 - 56,371,511 (+)	NCBI

Sequence:

show sequence

TTTACCACGGAGACTGCTCCGCGGCGGCTGGTCCGGGCGGCTGCGGCGGCGGCGCTCTGGCTCC
TCAGCCGCCTGCGAGCCCCGCGCCCAGCACCTCCGCTCGGGCGGCCCGGGAGCCCTGCGCTTGA
TGGGCGGCATTATGGCCCCTAAAGACATAATGACAAATACTCACGCCAAGTCCATCCTCAACTC
AATGAACTCCCTCAGGAAGAGCAATACCCTCTGTGACGTGACCTTGAGAGTGGAGCAGAAAGAC
TTCCCTGCCCACCGGATTGTGCTGGCTGCCTGCAGCGATTATTTCTGTGCCATGTTCACTAGTG
AGCAAATGCCTGTAATGCCAGCCCTCAGAAGTCTGGGTGAGAGGATGGCTATAAATTCAAGGAC
AGCTTGGGCTACAACCTGGAAACCAGCTTTCAGAGAAGGGGAAGCCATATGTTGACATTCAAGG
TTTAACTGCTTCTACAATGGAAATCCTGTTGGACTTCGTGTATACAGAAACAGTACATGTGACA
GTGGAGAATGTTCAAGAACTGCTCCCTGCAGCCTGTCTTCTCCAGTTGAAAGGTGTAAAACAAG
CCTGCTGTGAGTTCTTAGAAAGTCAGTTGGATCCATCTAATTGCCTGGGTATCAGGGATTTTGC
TGAAACTCACAATTGCGTTGACCTGATGCAAGCAGCTGAGGTTTTTAGCCAGAAGCATTTTCCT
GAAGTGGTACAGCACGAAGAGTTCATTCTTCTGAGTCAAGGAGAGGTGGAGAAGCTAATCAAGT
GCGATGAGATTCAGGTGGATTCTGAAGAGCCAGTCTTTGAGGCTGTCATCAACTGGGTGAAGCA
TGCCAAGAAGGAGCGAGAGGAGTCTTTGCCTGACCTCCTGCAGTATGTTCGGATGCCCCTGCTG
ACCCCTAGGTACATTACAGATGTGATTGATGCTGAGCCTTTTATCCGCTGTAGTTTACAGTGCA
GGGACCTAGTTGATGAAGCCAAGAAGTTTCACCTGAGGCCTGAACTTCGGAGTCAGATGCAAGG
ACCCAGGACAAGAGCCCGACTAGGAGCCAATGAAGTGCTTCTGGTGGTTGGGGGCTTCGGAAGC
CAGCAGTCTCCTATTGATGTGGTAGAGAAATATGACCCCAAGACACAGGAGTGGAGCTTTTTGC
CAAGTATCACTCGCAAGAGACGGTATGTGGCCTCGGTTTCCTTACATGATCGGATCTATGTGAT
TGGTGGCTATGATGGCCGTTCCCGCCTCAGTTCAGTGGAGTGTCTAGACTACACAGCAGATGAA
GACGGAGTGTGGTACTCTGTGGCCCCTATGAATGTGCGGCGAGGCCTTGCTGGAGCCACCACAC
TGGGAGATATGATTTACGTTTCTGGAGGCTTTGATGGAAGCAGGCGTCATACAAGTATGGAGCG
GTATGACCCAAACATTGACCAGTGGAGTATGCTGGGAGATATGCAGACAGCTCGAGAGGGCGCG
GGACTAGTGGTGGCCAGCGGCATAATCTACTGTCTAGGAGGATATGATGGCTTGAATATATTAA
ATTCAGTTGAGAAATATGATCCCCATACAGGACACTGGACTAATGTTACGCCTATGGCCACCAA
GCGTTCTGGTGCTGGAGTAGCCCTACTGAATGACCATATTTATGTGGTGGGAGGGTTCGATGGT
ACAGCCCACCTTTCTTCTGTTGAAGCTTATAACATTCGCACGGATTCCTGGACAACTGTCACAA
GTATGACCACACCACGATGCTATGTAGGGGCCACAGTGCTTCGAGGGAGACTCTATGCAATCGC
AGGATACGATGGGAATTCTCTGCTGAGCAGCATTGAGTGTTATGACCCTATCATCGACAGCTGG
GAAGTAGTGGCCTCCATGGGAACCCAGCGTTGTGACGCTGGTGTGTGTGTTCTCCGAGAAAAGT
AACTGTTATTTGGACACCAGCTGGGAACAGTTTGTGGGAGAATGAAGGATCCTTTCCAGAATGT
TCACTTCTCACTGTGTGCACAGGGCGATTACAGGCACCAGTGCTGTGATGATTGTACTTATTTG
ACGCACATGCTCCTTCTCACTGGCCATCCTGCTCAGACGCACGGGGAACAGGTCCTCAAGGGAA
GAGAATGCACACACGGATCAGAGACACAGATCATGGCTCTCTGTGGTCTGAGGAGCACTTTCTT
CTGTTTGTAACTTACCATGTGCTTGGGAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTATGTGTTGTGCCTCGTATATTGCAGAGAATTAAGGTGAGTATGGCCTACTAGAT
GTGGGCAGTGTCCATCCTGTGTGATTGGAAGGATATCAGTTTATATAAGCTTGGTAAAATGAAA
GTCTTTTCTCCACTCAGAAGCAAAAATATCTTTTCTAAATACAGAGGTAGCTCGAGGCACCACA
GTTCCTTTCTGTAGGAAACCAAGAGATCACTGTCAACATTTGAGAGGCCAAGAAGGAAGATTCG
TGCTGTTCTCACTTAGGGAGACATAGTTGGCACAGAGATTTGAGTAAGTGGCAGGAGCTGAATG
GAATGTGGGTGAACCCAGAAAATCACTGAAGTGTGAACTGGAAGGCTGGCAAGGACATATTATC
TGACTCCATGGTCTTTCTAATGTAAAATGTTGCACCATCTTGGTTGGCACTGGAGACTGAGAGA
TTAACAGTGGAAAAGGTTAGAATAAGAAATGCTGTAAATGTGCAGAGTTCAACATACCTGTGGT
AAACTAGAAATATCTGTGATTTTACAATCATCTTAGTCCCTGCCAGGGCTCCCATAGCCGTGGC
AGTATTTGTCTTATGTGGGTGAAAAGACCATCTTCCTGGTGAATCAAGTGCTACCACGTTACTT
CGCCTCCACACTATTTATTTGGGGATGGGTGGGGTTGCTGCAGCCTAGTAGTTCAGGTACTGAT
TACTGCCCTGTTGTTTTAAGGGCGCACTTCCACTGAGGAGTGTTTAATACTGCTGTGTGGTACG
TTCAGTTCTCTTCCTGCTATATCTTCTGTACTTGTCATTACAGTGTATTTTATTCATCCTGGAA
CAAAATAATCAAGGACAATTGAAAATCTTTTGTTAGTTTCCGCACCTCTGCCAATGTTCCCGAG
CTGCCATTCTGGCTCCTCTGTCATGGTGAATTCTGCAGTTACTGGTATAGCAAATAGGAGAGTG
TGGGAGCCGGAACTGGGCTGCACTTGCCTTTTGCTCTGGAATCCCACTTTTCCTCTCTCCCTGA
ATTGTGTTTGCTGATAGAGTTAATTTCCTTTGTATTTTTTTAAGAAAACATTAAAAATGAACTG
TCTCAAATGGC

hide sequence

RefSeq Acc Id:

XM_008769540 ⟹ XP_008767762

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,915 - 45,933,648 (+)	NCBI
Rnor_6.0	13	51,280,941 - 51,314,748 (+)	NCBI

Sequence:

show sequence

GTTTACCACGGAGACTGCTCCGCGGCGGCTGGTCCGGGCGGCTGCGGCGGCGGCGCTCTGGCTC
CTCAGCCGCCTGCGAGCCCCGCGCCCAGCACCTCCGCTCGGGCGGCCCGGGAGCCCTGGTGAGT
GGGCGCGGCCCTGACACGCGCCCTTTCCCTTCTGCCCTCAGCCGGGGACGCGGCCTTCCCCCAG
CCCTGGTACCCCTTGGTCGGGAGGAGACGCGCTGGGGCGCTGCAGGCAGGCTTAGTGCTGCCTT
CTCAGCTTCTCCTGCGCAGCTCCCGCCTGCCCCAGAGAAGGTTTAACCTGGAAGGAAAGAATTC
AGCCGAGAAACAGTTAAGGGGACATTTATTTAGCAGAGCTACACACTCCAAAGATTGGAGTGGG
CTTCCTCCGAAGCGCTTGATGGGCGGCATTATGGCCCCTAAAGACATAATGACAAATACTCACG
CCAAGTCCATCCTCAACTCAATGAACTCCCTCAGGAAGAGCAATACCCTCTGTGACGTGACCTT
GAGAGTGGAGCAGAAAGACTTCCCTGCCCACCGGATTGTGCTGGCTGCCTGCAGCGATTATTTC
TGTGCCATGTTCACTAGTGAGATGAAAGGTCTCAACAAATGCCTTGCCAAGGTCACATTGCTTA
GAGCACCACAGAGAGCAAATGCCTGTAATGCCAGCCCTCAGAAGTCTGGGTGAGAGGATGGCTA
TAAATTCAAGGACAGCTTGGGCTACAACCTGGAAACCAGGTCAGCCACATAGCATAATCAGCTT
TCAGAGAAGGGGAAGCCATATGTTGACATTCAAGGTTTAACTGCTTCTACAATGGAAATCCTGT
TGGACTTCGTGTATACAGAAACAGTACATGTGACAGTGGAGAATGTTCAAGAACTGCTCCCTGC
AGCCTGTCTTCTCCAGTTGAAAGGTGTAAAACAAGCCTGCTGTGAGTTCTTAGAAAGTCAGTTG
GATCCATCTAATTGCCTGGGTATCAGGGATTTTGCTGAAACTCACAATTGCGTTGACCTGATGC
AAGCAGCTGAGGTTTTTAGCCAGAAGCATTTTCCTGAAGTGGTACAGCACGAAGAGTTCATTCT
TCTGAGTCAAGGAGAGGTGGAGAAGCTAATCAAGTGCGATGAGATTCAGGTGGATTCTGAAGAG
CCAGTCTTTGAGGCTGTCATCAACTGGGTGAAGCATGCCAAGAAGGAGCGAGAGGAGTCTTTGC
CTGACCTCCTGCAGTATGTTCGGATGCCCCTGCTGACCCCTAGGTACATTACAGATGTGATTGA
TGCTGAGCCTTTTATCCGCTGTAGTTTACAGTGCAGGGACCTAGTTGATGAAGCCAAGAAGTTT
CACCTGAGGCCTGAACTTCGGAGTCAGATGCAAGGACCCAGGACAAGAGCCCGACTAGGAGCCA
ATGAAGTGCTTCTGGTGGTTGGGGGCTTCGGAAGCCAGCAGTCTCCTATTGATGTGGTAGAGAA
ATATGACCCCAAGACACAGGAGTGGAGCTTTTTGCCAAGTATCACTCGCAAGAGACGGTATGTG
GCCTCGGTTTCCTTACATGATCGGATCTATGTGATTGGTGGCTATGATGGCCGTTCCCGCCTCA
GTTCAGTGGAGTGTCTAGACTACACAGCAGATGAAGACGGAGTGTGGTACTCTGTGGCCCCTAT
GAATGTGCGGCGAGGCCTTGCTGGAGCCACCACACTGGGAGATATGATTTACGTTTCTGGAGGC
TTTGATGGAAGCAGGCGTCATACAAGTATGGAGCGGTATGACCCAAACATTGACCAGTGGAGTA
TGCTGGGAGATATGCAGACAGCTCGAGAGGGCGCGGGACTAGTGGTGGCCAGCGGCATAATCTA
CTGTCTAGGAGGATATGATGGCTTGAATATATTAAATTCAGTTGAGAAATATGATCCCCATACA
GGACACTGGACTAATGTTACGCCTATGGCCACCAAGCGTTCTGGTGCTGGAGTAGCCCTACTGA
ATGACCATATTTATGTGGTGGGAGGGTTCGATGGTACAGCCCACCTTTCTTCTGTTGAAGCTTA
TAACATTCGCACGGATTCCTGGACAACTGTCACAAGTATGACCACACCACGATGCTATGTAGGG
GCCACAGTGCTTCGAGGGAGACTCTATGCAATCGCAGGATACGATGGGAATTCTCTGCTGAGCA
GCATTGAGTGTTATGACCCTATCATCGACAGCTGGGAAGTAGTGGCCTCCATGGGAACCCAGCG
TTGTGACGCTGGTGTGTGTGTTCTCCGAGAAAAGTAACTGTTATTTGGACACCAGCTGGGAACA
GTTTGTGGGAGAATGAAGGATCCTTTCCAGAATGTTCACTTCTCACTGTGTGCACAGGGCGATT
ACAGGCACCAGTGCTGTGATGATTGTACTTATTTGACGCACATGCTCCTTCTCACTGGCCATCC
TGCTCAGACGCACGGGGAACAGGTCCTCAAGGGAAGAGAATGCACACACGGATCAGAGACACAG
ATCATGGCTCTCTGTGGTCTGAGGAGCACTTTCTTCTGTTTGTAACTTACCATGTGCTTGGGAG
AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTGCCTCGTATA
TTGCAGAGAATTAAGGTGAGTATGGCCTACTAGATGTGGGCAGTGTCCATCCTGTGTGATTGGA
AGGATATCAGTTTATATAAGCTTGGTAAAATGAAAGTCTTTTCTCCACTCAGAAGCAAAAATAT
CTTTTCTAAATACAGAGGTAGCTCGAGGCACCACAGTTCCTTTCTGTAGGAAACCAAGAGATCA
CTGTCAACATTTGAGAGGCCAAGAAGGAAGATTCGTGCTGTTCTCACTTAGGGAGACATAGTTG
GCACAGAGATTTGAGTAAGTGGCAGGAGCTGAATGGAATGTGGGTGAACCCAGAAAATCACTGA
AGTGTGAACTGGAAGGCTGGCAAGGACATATTATCTGACTCCATGGTCTTTCTAATGTAAAATG
TTGCACCATCTTGGTTGGCACTGGAGACTGAGAGATTAACAGTGGAAAAGGTTAGAATAAGAAA
TGCTGTAAATGTGCAGAGTTCAACATACCTGTGGTAAACTAGAAATATCTGTGATTTTACAATC
ATCTTAGTCCCTGCCAGGGCTCCCATAGCCGTGGCAGTATTTGTCTTATGTGGGTGAAAAGACC
ATCTTCCTGGTGAATCAAGTGCTACCACGTTACTTCGCCTCCACACTATTTATTTGGGGATGGG
TGGGGTTGCTGCAGCCTAGTAGTTCAGGTACTGATTACTGCCCTGTTGTTTTAAGGGCGCACTT
CCACTGAGGAGTGTTTAATACTGCTGTGTGGTACGTTCAGTTCTCTTCCTGCTATATCTTCTGT
ACTTGTCATTACAGTGTATTTTATTCATCCTGGAACAAAATAATCAAGGACAATTGAAAATCTT
TTGTTAGTTTCCGCACCTCTGCCAATGTTCCCGAGCTGCCATTCTGGCTCCTCTGTCATGGTGA
ATTCTGCAGTTACTGGTATAGCAAATAGGAGAGTGTGGGAGCCGGAACTGGGCTGCACTTGCCT
TTTGCTCTGGAATCCCACTTTTCCTCTCTCCCTGAATTGTGTTTGCTGATAGAGTTAATTTCCT
TTGTATTTTTTTAAGAAAACATTAAAAATGAACTGTCTCAAATGGC

hide sequence

RefSeq Acc Id:

XM_039090401 ⟹ XP_038946329

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,913 - 45,933,648 (+)	NCBI

RefSeq Acc Id:

XM_039090402 ⟹ XP_038946330

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,914 - 45,933,648 (+)	NCBI

RefSeq Acc Id:

XM_039090404 ⟹ XP_038946332

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,913 - 45,933,648 (+)	NCBI

RefSeq Acc Id:

XM_039090405 ⟹ XP_038946333

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,915 - 45,933,648 (+)	NCBI

RefSeq Acc Id:

XM_039090406 ⟹ XP_038946334

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,915 - 45,933,648 (+)	NCBI

RefSeq Acc Id:

XM_039090407 ⟹ XP_038946335

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,915 - 45,933,648 (+)	NCBI

RefSeq Acc Id:

XM_039090408 ⟹ XP_038946336

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	45,899,913 - 45,933,648 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_714952	(Get FASTA)	NCBI Sequence Viewer
	XP_006249905	(Get FASTA)	NCBI Sequence Viewer
	XP_006249906	(Get FASTA)	NCBI Sequence Viewer
	XP_006249907	(Get FASTA)	NCBI Sequence Viewer
	XP_006249908	(Get FASTA)	NCBI Sequence Viewer
	XP_008767762	(Get FASTA)	NCBI Sequence Viewer
	XP_038946329	(Get FASTA)	NCBI Sequence Viewer
	XP_038946330	(Get FASTA)	NCBI Sequence Viewer
	XP_038946332	(Get FASTA)	NCBI Sequence Viewer
	XP_038946333	(Get FASTA)	NCBI Sequence Viewer
	XP_038946334	(Get FASTA)	NCBI Sequence Viewer
	XP_038946335	(Get FASTA)	NCBI Sequence Viewer
	XP_038946336	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86983	(Get FASTA)	NCBI Sequence Viewer
	CAC79640	(Get FASTA)	NCBI Sequence Viewer
	EDM09724	(Get FASTA)	NCBI Sequence Viewer
	Q8R2H4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_714952 ⟸ NM_153730

- UniProtKB:

Q8R2H4 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGGIMAPKDIMTNTHAKSILNSMNSLRKSNTLCDVTLRVEQKDFPAHRIVLAACSDYFCAMFTS
ELSEKGKPYVDIQGLTASTMEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQACCEFLES
QLDPSNCLGIRDFAETHNCVDLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKCDEIQVDS
EEPVFEAVINWVKHAKKEREESLPDLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAK
KFHLRPELRSQMQGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR
YVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVS
GGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGIIYCLGGYDGLNILNSVEKYDP
HTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY
VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVASMGTQRCDAGVCVLREK

hide sequence

RefSeq Acc Id:	XP_006249907 ⟸ XM_006249845
- Peptide Label:	isoform X4
- UniProtKB:	Q8R2H4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGGIMAPKDIMTNTHAKSILNSMNSLRKSNTLCDVTLRVEQKDFPAHRIVLAACSDYFCAMFTS ELSEKGKPYVDIQGLTASTMEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQACCEFLES QLDPSNCLGIRDFAETHNCVDLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKCDEIQVDS EEPVFEAVINWVKHAKKEREESLPDLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAK KFHLRPELRSQMQGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR YVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVS GGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGIIYCLGGYDGLNILNSVEKYDP HTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVASMGTQRCDAGVCVLREK hide sequence

RefSeq Acc Id:

XP_006249906 ⟸ XM_006249844

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGGIMAPKDIMTNTHAKSILNSMNSLRKSNTLCDVTLRVEQKDFPAHRIVLAACSDYFCAMFTS
EVNASLCYLSEKGKPYVDIQGLTASTMEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQA
CCEFLESQLDPSNCLGIRDFAETHNCVDLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKC
DEIQVDSEEPVFEAVINWVKHAKKEREESLPDLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCR
DLVDEAKKFHLRPELRSQMQGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP
SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL
GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGIIYCLGGYDGLNILN
SVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS
MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVASMGTQRCDAGVCVLREK

hide sequence

RefSeq Acc Id:

XP_006249908 ⟸ XM_006249846

- Peptide Label:

isoform X5

- Sequence:

show sequence

MEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQACCEFLESQLDPSNCLGIRDFAETHNC
VDLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKCDEIQVDSEEPVFEAVINWVKHAKKER
EESLPDLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRA
RLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG
RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNI
DQWSMLGDMQTAREGAGLVVASGIIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAG
VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN
SLLSSIECYDPIIDSWEVVASMGTQRCDAGVCVLREK

hide sequence

RefSeq Acc Id:

XP_006249905 ⟸ XM_006249843

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGGIMAPKDIMTNTHAKSILNSMNSLRKSNTLCDVTLRVEQKDFPAHRIVLAACSDYFCAMFTS
EVNASLCYLSEKGKPYVDIQGLTASTMEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQA
CCEFLESQLDPSNCLGIRDFAETHNCVDLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKC
DEIQVDSEEPVFEAVINWVKHAKKEREESLPDLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCR
DLVDEAKKFHLRPELRSQMQGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP
SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL
GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGIIYCLGGYDGLNILN
SVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS
MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVASMGTQRCDAGVCVLREK

hide sequence

RefSeq Acc Id:

XP_008767762 ⟸ XM_008769540

- Peptide Label:

isoform X5

- Sequence:

show sequence

MEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQACCEFLESQLDPSNCLGIRDFAETHNC
VDLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKCDEIQVDSEEPVFEAVINWVKHAKKER
EESLPDLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRA
RLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG
RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNI
DQWSMLGDMQTAREGAGLVVASGIIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAG
VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN
SLLSSIECYDPIIDSWEVVASMGTQRCDAGVCVLREK

hide sequence

RefSeq Acc Id:

ENSRNOP00000005832 ⟸ ENSRNOT00000005832

RefSeq Acc Id:	XP_038946329 ⟸ XM_039090401
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038946336 ⟸ XM_039090408
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038946332 ⟸ XM_039090404
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038946330 ⟸ XM_039090402
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038946333 ⟸ XM_039090405
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038946334 ⟸ XM_039090406
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038946335 ⟸ XM_039090407
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSRNOP00000086049 ⟸ ENSRNOT00000119533

Protein Domains

BACK BTB

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
13	51284354	51284355	G	A	snv	LEXF10A/StmMcwi (2020), LE/Stm (RGD), LE/Stm (2019), LEXF4/Stm (2020), LEXF11/Stm (2020)

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
13	56341019	56341020	G	A	snv	LE/Stm (Illumina) (KNAW), LE/Stm (KyushuU), LE/Stm (SOLiD) (KNAW)

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
13	45903372	45903373	G	A	snv	LEXF11/Stm (2020), LEXF10A/StmMcwi (2020), LE/Stm (2019), LEXF4/Stm (2020)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628717	AgrOrtholog
BioCyc Gene	G2FUF-18230	BioCyc
Ensembl Genes	ENSRNOG00000004193	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000005832	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000086049	ENTREZGENE
Ensembl Transcript	ENSRNOT00000005832	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000119533	ENTREZGENE
Gene3D-CATH	2.120.10.80	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.710.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133597	IMAGE-MGC_LOAD
InterPro	BACK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB-kelch_protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB/POZ_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch-typ_b-propeller	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:266772	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93127	IMAGE-MGC_LOAD
NCBI Gene	266772	ENTREZGENE
Pfam	BACK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Klhl12	PhenoGen
PIRSF	Kelch-like_protein_gigaxonin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	BACK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BTB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF117281	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF54695	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A140TA97_RAT	UniProtKB/TrEMBL
	KLH12_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	F8WG02	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-02-06	Klhl12	kelch-like family member 12	Klhl12	kelch-like 12 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Klhl12	kelch-like 12 (Drosophila)	C3ip1	kelch-like protein C3IP1	Symbol and Name updated	1299863	APPROVED
2004-02-26	C3ip1	kelch-like protein C3IP1			Symbol and Name status set to approved	625702	APPROVED
2003-02-27	C3ip1	kelch-like protein C3IP1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)