Klhl12 (kelch-like family member 12) - Rat Genome Database

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Pathways
Gene: Klhl12 (kelch-like family member 12) Rattus norvegicus
Analyze
Symbol: Klhl12
Name: kelch-like family member 12
RGD ID: 628717
Description: Predicted to enable identical protein binding activity and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including COPII vesicle coating; mesenchymal cell differentiation; and protein monoubiquitination. Predicted to be located in centriolar satellite. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human KLHL12 (kelch like family member 12); PARTICIPATES IN Wnt signaling, canonical pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C3ip1; CUL3-interacting protein 1; kelch-like 12; kelch-like 12 (Drosophila); kelch-like protein 12; kelch-like protein C3IP1; MGC93127
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,451,920 - 48,485,638 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,455,227 - 48,485,641 (+)EnsemblGRCr8
mRatBN7.21345,899,913 - 45,933,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,899,928 - 45,933,643 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,510,471 - 48,539,585 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,798,539 - 49,827,653 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,062,852 - 47,091,932 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,280,933 - 51,314,753 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,282,684 - 51,314,797 (+)Ensemblrn6Rnor6.0
Rnor_5.01356,337,598 - 56,371,511 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,403,579 - 47,433,301 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1346,231,068 - 46,260,077 (+)NCBICelera
RGSC_v3.11347,417,621 - 47,447,343 (+)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16189514   PMID:20970343   PMID:22358839   PMID:24334870   PMID:25416956   PMID:27107012   PMID:27716508  


Genomics

Comparative Map Data
Klhl12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,451,920 - 48,485,638 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,455,227 - 48,485,641 (+)EnsemblGRCr8
mRatBN7.21345,899,913 - 45,933,648 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,899,928 - 45,933,643 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,510,471 - 48,539,585 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,798,539 - 49,827,653 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,062,852 - 47,091,932 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,280,933 - 51,314,753 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,282,684 - 51,314,797 (+)Ensemblrn6Rnor6.0
Rnor_5.01356,337,598 - 56,371,511 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,403,579 - 47,433,301 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1346,231,068 - 46,260,077 (+)NCBICelera
RGSC_v3.11347,417,621 - 47,447,343 (+)NCBI
Cytogenetic Map13q13NCBI
KLHL12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,891,120 - 202,928,599 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,891,116 - 202,928,636 (-)Ensemblhg38GRCh38
GRCh371202,860,248 - 202,897,727 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,126,853 - 201,162,994 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341199,591,886 - 199,628,028NCBI
Celera1175,989,447 - 176,025,617 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,025,817 - 174,061,990 (-)NCBIHuRef
CHM1_11204,282,479 - 204,318,606 (-)NCBICHM1_1
T2T-CHM13v2.01202,153,802 - 202,191,306 (-)NCBIT2T-CHM13v2.0
Klhl12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,383,269 - 134,418,611 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,383,269 - 134,418,756 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381134,455,495 - 134,490,880 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,455,531 - 134,491,018 (+)Ensemblmm10GRCm38
MGSCv371136,352,132 - 136,387,450 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361136,271,966 - 136,307,284 (+)NCBIMGSCv36mm8
Celera1137,062,147 - 137,097,576 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.23NCBI
Klhl12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,900,022 - 38,931,374 (-)Ensembl
ChiLan1.0NW_00495540638,903,233 - 38,931,756 (-)NCBIChiLan1.0ChiLan1.0
KLHL12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,451,868 - 46,489,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,419,800 - 46,456,306 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,490,467 - 178,527,919 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,785,420 - 182,821,965 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,785,420 - 182,821,965 (-)EnsemblpanPan2panpan1.1
KLHL12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17256,814 - 284,132 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7311,438 - 338,723 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.07266,263 - 293,556 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7249,707 - 293,556 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17254,937 - 282,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07364,012 - 391,323 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07386,991 - 414,305 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Klhl12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,446,749 - 72,479,474 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,680,286 - 1,716,235 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,681,421 - 1,714,150 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,869,829 - 24,900,266 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11024,869,816 - 24,902,981 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21029,227,964 - 29,260,937 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLHL12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,479,798 - 26,516,293 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605527,256,921 - 27,293,054 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klhl12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,919,700 - 7,948,217 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248077,919,216 - 7,948,254 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Klhl12
243 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:104
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000005832
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134627292251216694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134599007750392939Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134778041850392939Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
RH129486  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2209,621,420 - 9,621,604 (+)MAPPERmRatBN7.2
mRatBN7.21345,916,257 - 45,916,441 (-)MAPPERmRatBN7.2
mRatBN7.21345,916,257 - 45,916,441 (+)MAPPERmRatBN7.2
mRatBN7.2209,621,420 - 9,621,604 (-)MAPPERmRatBN7.2
Rnor_6.02010,275,097 - 10,275,280NCBIRnor6.0
Rnor_6.01351,297,241 - 51,297,424NCBIRnor6.0
Rnor_5.01356,353,905 - 56,354,088UniSTSRnor5.0
Rnor_5.02012,464,410 - 12,464,593UniSTSRnor5.0
RGSC_v3.41347,416,575 - 47,416,758UniSTSRGSC3.4
RGSC_v3.4209,960,064 - 9,960,247UniSTSRGSC3.4
Celera2011,135,285 - 11,135,468UniSTS
Celera1346,244,064 - 46,244,247UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map20p12UniSTS
RH129888  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,916,291 - 45,916,488 (+)MAPPERmRatBN7.2
mRatBN7.2209,621,393 - 9,621,570 (-)MAPPERmRatBN7.2
Rnor_6.01351,297,275 - 51,297,471NCBIRnor6.0
Rnor_5.01356,353,939 - 56,354,135UniSTSRnor5.0
RGSC_v3.41347,416,609 - 47,416,805UniSTSRGSC3.4
Celera1346,244,098 - 46,244,294UniSTS
Cytogenetic Map13q13UniSTS
Cytogenetic Map20p12UniSTS
RH137226  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,933,305 - 45,933,512 (+)MAPPERmRatBN7.2
Rnor_6.01351,314,411 - 51,314,617NCBIRnor6.0
Rnor_5.01356,371,174 - 56,371,380UniSTSRnor5.0
RGSC_v3.41347,434,271 - 47,434,477UniSTSRGSC3.4
Celera1346,261,047 - 46,261,253UniSTS
RH 3.4 Map13171.4UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001433872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ133126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005832   ⟹   ENSRNOP00000005832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,455,227 - 48,485,641 (+)Ensembl
mRatBN7.2 Ensembl1345,899,928 - 45,933,643 (+)Ensembl
Rnor_6.0 Ensembl1351,282,684 - 51,314,797 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119533   ⟹   ENSRNOP00000086049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,455,266 - 48,484,346 (+)Ensembl
mRatBN7.2 Ensembl1345,901,006 - 45,932,356 (+)Ensembl
RefSeq Acc Id: NM_153730   ⟹   NP_714952
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,455,265 - 48,484,335 (+)NCBI
mRatBN7.21345,903,263 - 45,932,336 (+)NCBI
Rnor_6.01351,284,245 - 51,313,441 (+)NCBI
Rnor_5.01356,337,598 - 56,371,511 (+)NCBI
RGSC_v3.41347,403,579 - 47,433,301 (+)RGD
Celera1346,231,068 - 46,260,077 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249843   ⟹   XP_006249905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,451,922 - 48,485,638 (+)NCBI
mRatBN7.21345,899,913 - 45,933,648 (+)NCBI
Rnor_6.01351,280,938 - 51,314,748 (+)NCBI
Rnor_5.01356,337,598 - 56,371,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249844   ⟹   XP_006249906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,452,114 - 48,485,638 (+)NCBI
mRatBN7.21345,899,913 - 45,933,648 (+)NCBI
Rnor_6.01351,280,938 - 51,314,748 (+)NCBI
Rnor_5.01356,337,598 - 56,371,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249845   ⟹   XP_006249907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,451,985 - 48,485,638 (+)NCBI
mRatBN7.21345,899,914 - 45,933,648 (+)NCBI
Rnor_6.01351,280,933 - 51,314,748 (+)NCBI
Rnor_5.01356,337,598 - 56,371,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769540   ⟹   XP_008767762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,452,119 - 48,485,638 (+)NCBI
mRatBN7.21345,899,915 - 45,933,648 (+)NCBI
Rnor_6.01351,280,941 - 51,314,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090401   ⟹   XP_038946329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,451,920 - 48,485,638 (+)NCBI
mRatBN7.21345,899,913 - 45,933,648 (+)NCBI
RefSeq Acc Id: XM_039090402   ⟹   XP_038946330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,451,922 - 48,485,638 (+)NCBI
mRatBN7.21345,899,914 - 45,933,648 (+)NCBI
RefSeq Acc Id: XM_039090404   ⟹   XP_038946332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,451,926 - 48,485,638 (+)NCBI
mRatBN7.21345,899,913 - 45,933,648 (+)NCBI
RefSeq Acc Id: XM_039090405   ⟹   XP_038946333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,452,119 - 48,485,638 (+)NCBI
mRatBN7.21345,899,915 - 45,933,648 (+)NCBI
RefSeq Acc Id: XM_039090406   ⟹   XP_038946334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,452,119 - 48,485,638 (+)NCBI
mRatBN7.21345,899,915 - 45,933,648 (+)NCBI
RefSeq Acc Id: XM_039090407   ⟹   XP_038946335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,452,119 - 48,485,638 (+)NCBI
mRatBN7.21345,899,915 - 45,933,648 (+)NCBI
RefSeq Acc Id: XM_039090408   ⟹   XP_038946336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,451,923 - 48,485,638 (+)NCBI
mRatBN7.21345,899,913 - 45,933,648 (+)NCBI
RefSeq Acc Id: XM_063272056   ⟹   XP_063128126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,451,929 - 48,485,638 (+)NCBI
RefSeq Acc Id: NP_714952   ⟸   NM_153730
- UniProtKB: A6ICC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249907   ⟸   XM_006249845
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006249906   ⟸   XM_006249844
- Peptide Label: isoform X3
- UniProtKB: A0A140TA97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249905   ⟸   XM_006249843
- Peptide Label: isoform X3
- UniProtKB: A0A140TA97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767762   ⟸   XM_008769540
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000005832   ⟸   ENSRNOT00000005832
RefSeq Acc Id: XP_038946329   ⟸   XM_039090401
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038946336   ⟸   XM_039090408
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038946332   ⟸   XM_039090404
- Peptide Label: isoform X3
- UniProtKB: A0A140TA97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946330   ⟸   XM_039090402
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A1G7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946333   ⟸   XM_039090405
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038946334   ⟸   XM_039090406
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038946335   ⟸   XM_039090407
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000086049   ⟸   ENSRNOT00000119533
RefSeq Acc Id: XP_063128126   ⟸   XM_063272056
- Peptide Label: isoform X4
- UniProtKB: A6ICC3 (UniProtKB/TrEMBL)
Protein Domains
BACK   BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R2H4-F1-model_v2 AlphaFold Q8R2H4 1-568 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628717 AgrOrtholog
BioCyc Gene G2FUF-18230 BioCyc
Ensembl Genes ENSRNOG00000004193 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000005832 ENTREZGENE
  ENSRNOT00000119533 ENTREZGENE
Gene3D-CATH 1.25.40.420 UniProtKB/Swiss-Prot
  2.120.10.80 UniProtKB/Swiss-Prot
  Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7133597 IMAGE-MGC_LOAD
InterPro BACK UniProtKB/Swiss-Prot
  BTB-kelch_protein UniProtKB/Swiss-Prot
  BTB/POZ_dom UniProtKB/Swiss-Prot
  Kelch-typ_b-propeller UniProtKB/Swiss-Prot
  Kelch_1 UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
KEGG Report rno:266772 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93127 IMAGE-MGC_LOAD
NCBI Gene 266772 ENTREZGENE
PANTHER KELCH PROTEIN UniProtKB/Swiss-Prot
  KELCH-LIKE PROTEIN 12 UniProtKB/Swiss-Prot
Pfam BACK UniProtKB/Swiss-Prot
  BTB UniProtKB/Swiss-Prot
  Kelch_1 UniProtKB/Swiss-Prot
  Kelch_KLHDC2_KLHL20_DRC7 UniProtKB/Swiss-Prot
PhenoGen Klhl12 PhenoGen
PIRSF Kelch-like_protein_gigaxonin UniProtKB/Swiss-Prot
PRINTS KELCHREPEAT UniProtKB/Swiss-Prot
PROSITE BTB UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004193 RatGTEx
SMART BACK UniProtKB/Swiss-Prot
  BTB UniProtKB/Swiss-Prot
  Kelch UniProtKB/Swiss-Prot
Superfamily-SCOP SSF117281 UniProtKB/Swiss-Prot
  SSF54695 UniProtKB/Swiss-Prot
UniProt A0A140TA97 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1G7 ENTREZGENE, UniProtKB/TrEMBL
  A6ICC3 ENTREZGENE, UniProtKB/TrEMBL
  KLH12_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary F8WG02 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-06 Klhl12  kelch-like family member 12  Klhl12  kelch-like 12 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Klhl12  kelch-like 12 (Drosophila)  C3ip1  kelch-like protein C3IP1  Symbol and Name updated 1299863 APPROVED
2004-02-26 C3ip1  kelch-like protein C3IP1      Symbol and Name status set to approved 625702 APPROVED
2003-02-27 C3ip1  kelch-like protein C3IP1      Symbol and Name status set to provisional 70820 PROVISIONAL