Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Nr6a1 (nuclear receptor subfamily 6, group A, member 1) Rattus norvegicus
Analyze
Symbol: Nr6a1
Name: nuclear receptor subfamily 6, group A, member 1
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Predicted to be involved in gamete generation; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus and transcription regulator complex. Orthologous to human NR6A1 (nuclear receptor subfamily 6 group A member 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: Gcnf; germ cell nuclear factor; LOW QUALITY PROTEIN: nuclear receptor subfamily 6 group A member 1; nuclear receptor subfamily 6 group A member 1
Orthologs:
Homo sapiens (human) : NR6A1 (nuclear receptor subfamily 6 group A member 1)  HGNC  Alliance
Mus musculus (house mouse) : Nr6a1 (nuclear receptor subfamily 6, group A, member 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Nr6a1 (nuclear receptor subfamily 6 group A member 1)
Pan paniscus (bonobo/pygmy chimpanzee) : NR6A1 (nuclear receptor subfamily 6 group A member 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Nr6a1 (nuclear receptor subfamily 6 group A member 1)
Sus scrofa (pig) : NR6A1 (nuclear receptor subfamily 6 group A member 1)
Chlorocebus sabaeus (African green monkey) : NR6A1 (nuclear receptor subfamily 6 group A member 1)
Heterocephalus glaber (naked mole-rat) : Nr6a1 (nuclear receptor subfamily 6 group A member 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0323,029,222 - 23,218,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,033,775 - 23,066,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,253,752 - 28,311,777 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,533,072 - 18,564,668 (-)NCBIRGSC3.4rn4RGSC3.4
Celera320,928,332 - 20,987,223 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Nr6a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564740
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.