Rps7 (ribosomal protein S7) - Rat Genome Database
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Gene: Rps7 (ribosomal protein S7) Rattus norvegicus
Analyze
Symbol: Rps7
Name: ribosomal protein S7
RGD ID: 61907
Description: Exhibits poly(U) RNA binding activity. Predicted to be involved in several processes, including negative regulation of cellular protein metabolic process; protein stabilization; and ribosome biogenesis. Localizes to cytosolic small ribosomal subunit. Predicted to colocalize with centrosome. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Orthologous to human RPS7 (ribosomal protein S7); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17beta-hydroxy-5alpha-androstan-3-one; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 40S ribosomal protein S7; LOC497813; MGC188796; MGC72770; S8; similar to ribosomal protein S7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC500148  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2645,266,200 - 45,271,064 (-)NCBI
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0647,899,525 - 47,904,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0656,601,561 - 56,606,425 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,511,961 - 46,516,825 (-)NCBIRGSC3.4rn4RGSC3.4
Celera644,489,474 - 44,494,338 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8706699   PMID:8889548   PMID:9687515   PMID:11823430   PMID:12477932   PMID:14681019   PMID:15384171   PMID:15489334   PMID:15883184   PMID:16213212   PMID:16452087   PMID:16854843  
PMID:17310983   PMID:18697920   PMID:18809582   PMID:19946888   PMID:20873783   PMID:21423176   PMID:21630459   PMID:22658674   PMID:22681889   PMID:23376485   PMID:23979707   PMID:26316108  
PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Rps7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2645,266,200 - 45,271,064 (-)NCBI
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0647,899,525 - 47,904,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0656,601,561 - 56,606,425 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,511,961 - 46,516,825 (-)NCBIRGSC3.4rn4RGSC3.4
Celera644,489,474 - 44,494,338 (-)NCBICelera
Cytogenetic Map6q16NCBI
RPS7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl23,575,260 - 3,580,920 (+)EnsemblGRCh38hg38GRCh38
GRCh3823,575,260 - 3,580,920 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3723,622,850 - 3,628,510 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh3723,622,853 - 3,628,509 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3623,600,728 - 3,606,384 (+)NCBINCBI36hg18NCBI36
Build 3423,116,236 - 3,121,877NCBI
Celera23,631,842 - 3,637,496 (+)NCBI
Cytogenetic Map2p25.3NCBI
HuRef23,564,506 - 3,570,162 (+)NCBIHuRef
CHM1_123,552,270 - 3,557,926 (+)NCBICHM1_1
Rps7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391228,680,846 - 28,685,952 (-)NCBIGRCm39mm39
GRCm381228,630,847 - 28,635,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1228,630,854 - 28,635,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv371229,315,712 - 29,320,818 (-)NCBIGRCm37mm9NCBIm37
MGSCv361229,217,366 - 29,222,193 (-)NCBImm8
Celera1230,121,287 - 30,126,412 (-)NCBICelera
Cytogenetic Map12A2NCBI
Rps7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554873,792,870 - 3,798,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554873,793,168 - 3,798,007 (-)NCBIChiLan1.0ChiLan1.0
RPS7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A3,511,821 - 3,517,785 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A3,593,350 - 3,599,106 (+)NCBIMhudiblu_PPA_v0panPan3
RPS7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl172,138,779 - 2,143,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1172,139,011 - 2,143,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rps7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365321,734,993 - 1,740,202 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3131,258,713 - 131,342,877 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13131,258,709 - 131,263,285 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23140,517,094 - 140,521,644 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114104,069,825 - 104,075,669 (-)NCBI
ChlSab1.1 Ensembl14104,069,645 - 104,075,647 (-)Ensembl
Rps7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248465,185,236 - 5,190,357 (-)NCBI

Position Markers
UniSTS:488324  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0371,837,227 - 71,837,899NCBIRnor6.0
Rnor_5.0378,358,296 - 78,358,968UniSTSRnor5.0
RGSC_v3.4367,638,872 - 67,639,544UniSTSRGSC3.4
Celera368,874,596 - 68,875,268UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map6q16UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)71017386255173862Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295857516539Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)61941788764417887Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62151530265784818Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63425776653855198Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63499565675623393Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63626028860606186Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63760898075023446Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63819641260606431Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:22
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000011333
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 4 4 3 4 8 3
Medium 1 43 53 37 16 37 8 11 74 35 33 8 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA819435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011333   ⟹   ENSRNOP00000011333
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl647,899,558 - 47,904,163 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092848
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl647,902,445 - 47,904,357 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092867   ⟹   ENSRNOP00000075995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093021
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl647,900,056 - 47,904,172 (-)Ensembl
RefSeq Acc Id: NM_031570   ⟹   NP_113758
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2645,266,200 - 45,271,064 (-)NCBI
Rnor_6.0647,899,525 - 47,904,389 (-)NCBI
Rnor_5.0656,601,561 - 56,606,425 (-)NCBI
RGSC_v3.4646,511,961 - 46,516,825 (-)RGD
Celera644,489,474 - 44,494,338 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_113758 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH60557 (Get FASTA)   NCBI Sequence Viewer  
  AAI68722 (Get FASTA)   NCBI Sequence Viewer  
  CAA40177 (Get FASTA)   NCBI Sequence Viewer  
  EDM03215 (Get FASTA)   NCBI Sequence Viewer  
  P62083 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113758   ⟸   NM_031570
- UniProtKB: P62083 (UniProtKB/Swiss-Prot),   B5DEL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075995   ⟸   ENSRNOT00000092867
RefSeq Acc Id: ENSRNOP00000011333   ⟸   ENSRNOT00000011333

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61907 AgrOrtholog
Ensembl Genes ENSRNOG00000008551 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000011333 UniProtKB/Swiss-Prot
  ENSRNOP00000075995 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011333 UniProtKB/Swiss-Prot
  ENSRNOT00000092867 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6888098 IMAGE-MGC_LOAD
InterPro Ribosomal_S7e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100362830 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:29258 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72770 IMAGE-MGC_LOAD
NCBI Gene 29258 ENTREZGENE
PANTHER PTHR11278 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S7e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps7 PhenoGen
PROSITE RIBOSOMAL_S7E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B5DEL9 ENTREZGENE, UniProtKB/TrEMBL
  P62083 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P23821 UniProtKB/Swiss-Prot
  P24818 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-04-12 Rps7  ribosomal protein S7  LOC497813  similar to ribosomal protein S7  Data Merged 737654 PROVISIONAL
2006-11-19 LOC497813  similar to ribosomal protein S7      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Rps7  ribosomal protein S7      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_other there are 14-16 copies of the gene 61743
gene_protein 194 amino acids 61743