Hnrnpu (heterogeneous nuclear ribonucleoprotein U)

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Gene: Hnrnpu (heterogeneous nuclear ribonucleoprotein U) Rattus norvegicus

Analyze

Symbol:

Hnrnpu

Name:

heterogeneous nuclear ribonucleoprotein U

RGD ID:

620372

Description:

Exhibits poly(G) binding activity; promoter-specific chromatin binding activity; and ribonucleoprotein complex binding activity. Involved in cellular response to dexamethasone stimulus; positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity; and positive regulation of gene expression. Localizes to nucleus and ribonucleoprotein complex. Predicted to colocalize with RNA polymerase II transcription regulator complex. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 54. Orthologous to human HNRNPU (heterogeneous nuclear ribonucleoprotein U); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

hnRNP U; Hnrpu; SAF-A; scaffold-attachment factor A; SN1; SP120; system N1 Na+ and H+-coupled glutamine transporter; transporter protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	90,069,058 - 90,086,905 (-)	NCBI
Rnor_6.0 Ensembl	13	96,225,912 - 96,238,572 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	13	96,222,093 - 96,238,845 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	100,663,218 - 100,679,960 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	93,978,865 - 93,987,654 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	94,168,061 - 94,176,568 (-)	NCBI
Celera	13	89,636,544 - 89,645,333 (-)	NCBI		Celera
Cytogenetic Map	13	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

colorectal cancer (ISO)

developmental and epileptic encephalopathy 54 (ISO)

epilepsy (ISO)

Generalized Epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

visual epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP,ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

acetylsalicylic acid (ISO)

acrolein (ISO)

acrylamide (EXP)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

Aroclor 1254 (ISO)

beauvericin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

Brodifacoum (EXP)

butanal (ISO)

calcium atom (EXP)

calcium(0) (EXP)

carbamazepine (ISO)

chloroprene (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (EXP,ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

enniatin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

lead(0) (ISO)

lead(2+) (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

PCB138 (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

propiconazole (ISO)

raloxifene (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tamoxifen (EXP,ISO)

titanium dioxide (ISO)

Tributyltin oxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Yessotoxin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adaptive thermogenesis (ISO,ISS)

cardiac muscle cell development (ISO)

cell division (IEA)

cellular response to dexamethasone stimulus (IDA)

cellular response to glucocorticoid stimulus (IEA,ISO)

cellular response to leukemia inhibitory factor (ISO,ISS)

chromatin organization (IEA)

circadian regulation of gene expression (ISO)

CRD-mediated mRNA stabilization (IBA,IEA,ISO)

dendritic transport of messenger ribonucleoprotein complex (ISO)

dosage compensation by inactivation of X chromosome (ISO)

maintenance of protein location in nucleus (IEA,ISO)

mRNA metabolic process (ISO)

mRNA processing (IEA)

mRNA stabilization (ISO)

negative regulation of kinase activity (IEA,ISO)

negative regulation of stem cell differentiation (IEA,ISO,ISS)

negative regulation of telomere maintenance via telomerase (IBA,IEA,ISO)

negative regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

negative regulation of transcription elongation from RNA polymerase II promoter (IEA,ISO)

positive regulation of attachment of mitotic spindle microtubules to kinetochore (IBA,IEA,ISO,ISS)

positive regulation of brown fat cell differentiation (ISO,ISS)

positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity (IDA)

positive regulation of gene expression (IMP)

positive regulation of stem cell proliferation (ISO)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO,ISS)

protein localization to spindle microtubule (IEA,ISO,ISS)

regulation of alternative mRNA splicing, via spliceosome (IBA,IEA,ISO)

regulation of chromatin organization (IBA,IEA,ISO,ISS)

regulation of mitotic cell cycle (IEA,ISO,ISS)

regulation of mitotic spindle assembly (IBA,IEA,ISO,ISS)

RNA localization to chromatin (IBA,ISO)

RNA splicing (IEA)

Cellular Component

catalytic step 2 spliceosome (IBA,IEA,ISO)

cell surface (IEA,ISO)

centrosome (IBA,IEA,ISO,ISS)

condensed chromosome kinetochore (IEA)

CRD-mediated mRNA stability complex (IBA,IEA,ISO)

cytoplasmic ribonucleoprotein granule (IBA,IEA,ISO)

dendrite cytoplasm (IEA)

inactive sex chromosome (IBA,IEA,ISO)

kinetochore (IBA,IEA,ISO,ISS)

midbody (IEA,ISO,ISS)

mitotic spindle (ISO,ISS)

mitotic spindle microtubule (IBA,IEA,ISO,ISS)

mitotic spindle midzone (IBA,IEA,ISO,ISS)

nuclear chromosome (IBA,IEA,ISO)

nuclear matrix (IBA,IEA,ISO)

nuclear speck (IBA,IEA,ISO)

nucleoplasm (IBA,ISO)

nucleus (IDA,ISO)

protein-containing complex (ISO)

ribonucleoprotein complex (IDA,ISO)

RNA polymerase II transcription regulator complex (IBA,IEA,ISO)

spindle pole (IEA)

telomerase holoenzyme complex (IBA,IEA,ISO)

Molecular Function

actin binding (IEA,ISO)

ATP binding (IEA,ISO,ISS)

chromatin binding (ISO,ISS)

chromatin DNA binding (IEA,ISO)

DNA binding (ISO)

double-stranded DNA binding (ISO)

double-stranded RNA binding (IEA,ISO)

identical protein binding (IEA,ISO,ISS)

mRNA 3'-UTR binding (IEA,ISO)

poly(A) binding (IEA,ISO)

poly(C) RNA binding (IBA,IEA,ISO)

poly(G) binding (IBA,IDA,IEA,ISO)

pre-mRNA binding (IBA,IEA,ISO)

promoter-specific chromatin binding (IBA,IDA,ISO,ISS)

protein binding (IPI,ISO)

protein-containing complex binding (ISO)

ribonucleoprotein complex binding (IBA,IEA,IPI,ISO)

RNA binding (IBA,IDA,ISO)

RNA polymerase II C-terminal domain binding (IBA,ISO,ISS)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

RNA polymerase II complex binding (IEA,ISO)

sequence-specific DNA binding (ISO,ISS)

sequence-specific double-stranded DNA binding (IEA,ISO)

single-stranded DNA binding (IEA,ISO)

single-stranded RNA binding (ISO)

snRNA binding (IBA,IEA,ISO)

telomerase RNA binding (IEA,ISO)

TFIIH-class transcription factor complex binding (IBA,IEA,ISO)

transcription corepressor activity (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA,ISO)

References

References - curated


1.	Boulland JL, etal., Glia 2003 Feb;41(3):260-75.
2.	Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
3.	Cok SJ, etal., J Biol Chem. 2003 Sep 19;278(38):36157-62. Epub 2003 Jul 9.
4.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	GOA data from the GO Consortium
6.	Hope NR and Murray GI, Hum Pathol. 2011 Mar;42(3):393-402. doi: 10.1016/j.humpath.2010.08.006. Epub 2010 Dec 30.
7.	Kaneoka H, etal., Biochem Biophys Res Commun. 2009 Oct 2;387(4):717-22. doi: 10.1016/j.bbrc.2009.07.095. Epub 2009 Jul 24.
8.	Kawano S, etal., J Biol Chem. 2010 Aug 20;285(34):26451-60. doi: 10.1074/jbc.M110.112979. Epub 2010 Jun 16.
9.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	Pipeline to import KEGG annotations from KEGG into RGD
11.	RGD automated data pipeline
12.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	RGD automated import pipeline for gene-chemical interactions
14.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15.	Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.

Additional References at PubMed

PMID:1628625	PMID:7993898	PMID:8068679	PMID:8174554	PMID:9105675	PMID:9204873	PMID:9353307	PMID:9405365	PMID:10490622	PMID:11003645	PMID:11909954	PMID:11991638
PMID:14608463	PMID:15121898	PMID:15312650	PMID:15711563	PMID:16210410	PMID:17174306	PMID:17289661	PMID:18082603	PMID:18332112	PMID:19029303	PMID:19617346	PMID:19946888
PMID:20833368	PMID:21235343	PMID:21242313	PMID:22082260	PMID:22162999	PMID:22325991	PMID:22658674	PMID:22681889	PMID:22720776	PMID:23811339	PMID:23979707	PMID:24625528
PMID:25921091	PMID:25931508	PMID:25986610	PMID:26039991	PMID:26244333	PMID:28221134	PMID:28622508	PMID:28784777

Genomics

Comparative Map Data

Hnrnpu
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	90,069,058 - 90,086,905 (-)	NCBI
Rnor_6.0 Ensembl	13	96,225,912 - 96,238,572 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	13	96,222,093 - 96,238,845 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	13	100,663,218 - 100,679,960 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	93,978,865 - 93,987,654 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	13	94,168,061 - 94,176,568 (-)	NCBI
Celera	13	89,636,544 - 89,645,333 (-)	NCBI		Celera
Cytogenetic Map	13	q25	NCBI

HNRNPU
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	244,840,638 - 244,864,560 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	244,850,297 - 244,864,543 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	245,013,599 - 245,027,845 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	243,080,225 - 243,094,450 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	241,343,003 - 241,353,868	NCBI
Celera	1	218,303,553 - 218,317,021 (-)	NCBI
Cytogenetic Map	1	q44	NCBI
HuRef	1	215,396,765 - 215,410,903 (-)	NCBI		HuRef
CHM1_1	1	246,285,948 - 246,300,167 (-)	NCBI		CHM1_1

Hnrnpu
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	178,148,673 - 178,170,063 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	1	178,148,673 - 178,165,362 (-)	Ensembl
GRCm38	1	178,321,108 - 178,338,891 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	178,321,108 - 178,337,797 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	180,258,431 - 180,267,915 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	180,165,990 - 180,174,387 (-)	NCBI			mm8
Celera	1	185,387,923 - 185,397,431 (-)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI

Hnrnpu
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	8,000,269 - 8,021,554 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	8,000,269 - 8,021,554 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPU
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	225,830,663 - 225,842,031 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	225,817,899 - 225,842,031 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	220,450,218 - 220,461,412 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

HNRNPU
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	7	35,833,988 - 35,843,754 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	7	35,832,956 - 35,842,898 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Hnrnpu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936526	6,014,745 - 6,022,213 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPU
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	17,475,270 - 17,497,130 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	17,475,266 - 17,497,060 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	19,942,586 - 19,951,287 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPU
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	81,879,532 - 81,890,684 (-)	NCBI
ChlSab1.1 Ensembl	25	81,878,111 - 81,890,701 (-)	Ensembl

Hnrnpu
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624771	14,756,088 - 14,766,106 (+)	NCBI

Position Markers

RH125798

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,229,759 - 96,230,002	NCBI	Rnor6.0
Rnor_5.0	13	100,670,884 - 100,671,127	UniSTS	Rnor5.0
RGSC_v3.4	13	93,978,939 - 93,979,182	UniSTS	RGSC3.4
Celera	13	89,636,618 - 89,636,861	UniSTS
Cytogenetic Map	13	q26	UniSTS

WI-7584

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,229,789 - 96,230,125	NCBI	Rnor6.0
Rnor_5.0	13	100,670,914 - 100,671,250	UniSTS	Rnor5.0
RGSC_v3.4	13	93,978,969 - 93,979,305	UniSTS	RGSC3.4
Celera	13	89,636,648 - 89,636,984	UniSTS
Cytogenetic Map	13	q26	UniSTS

WI-8450

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,229,789 - 96,230,102	NCBI	Rnor6.0
Rnor_5.0	13	100,670,914 - 100,671,227	UniSTS	Rnor5.0
RGSC_v3.4	13	93,978,969 - 93,979,282	UniSTS	RGSC3.4
Celera	13	89,636,648 - 89,636,961	UniSTS
Cytogenetic Map	13	q26	UniSTS

RH135335

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,229,884 - 96,230,074	NCBI	Rnor6.0
Rnor_5.0	13	100,671,009 - 100,671,199	UniSTS	Rnor5.0
RGSC_v3.4	13	93,979,064 - 93,979,254	UniSTS	RGSC3.4
Celera	13	89,636,743 - 89,636,933	UniSTS
RH 3.4 Map	13	608.5	UniSTS
Cytogenetic Map	13	q26	UniSTS

C86794

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,231,306 - 96,231,788	NCBI	Rnor6.0
Rnor_5.0	13	100,672,431 - 100,672,913	UniSTS	Rnor5.0
RGSC_v3.4	13	93,980,486 - 93,980,968	UniSTS	RGSC3.4
Celera	13	89,638,165 - 89,638,647	UniSTS
Cytogenetic Map	13	q26	UniSTS

MARC_20677-20678:1024509130:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,230,358 - 96,231,022	NCBI	Rnor6.0
Rnor_5.0	13	100,671,483 - 100,672,147	UniSTS	Rnor5.0
RGSC_v3.4	13	93,979,538 - 93,980,202	UniSTS	RGSC3.4
Celera	13	89,637,217 - 89,637,881	UniSTS
Cytogenetic Map	13	q26	UniSTS

MARC_26419-26420:1036768776:5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,229,783 - 96,230,272	NCBI	Rnor6.0
Rnor_5.0	13	100,670,908 - 100,671,397	UniSTS	Rnor5.0
RGSC_v3.4	13	93,978,963 - 93,979,452	UniSTS	RGSC3.4
Celera	13	89,636,642 - 89,637,131	UniSTS
Cytogenetic Map	13	q26	UniSTS

ksks277

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,230,510 - 96,230,982	NCBI	Rnor6.0
Rnor_5.0	13	100,671,635 - 100,672,107	UniSTS	Rnor5.0
RGSC_v3.4	13	93,979,690 - 93,980,162	UniSTS	RGSC3.4
Celera	13	89,637,369 - 89,637,841	UniSTS
Cytogenetic Map	13	q26	UniSTS

A007A33

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,230,397 - 96,231,014	NCBI	Rnor6.0
Rnor_5.0	13	100,671,522 - 100,672,139	UniSTS	Rnor5.0
RGSC_v3.4	13	93,979,577 - 93,980,194	UniSTS	RGSC3.4
Celera	13	89,637,256 - 89,637,873	UniSTS
Cytogenetic Map	13	q26	UniSTS

HNRPU_1518

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,229,586 - 96,230,447	NCBI	Rnor6.0
Rnor_5.0	13	100,670,711 - 100,671,572	UniSTS	Rnor5.0
RGSC_v3.4	13	93,978,766 - 93,979,627	UniSTS	RGSC3.4
Celera	13	89,636,445 - 89,637,306	UniSTS
Cytogenetic Map	13	q26	UniSTS

UniSTS:546820

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	13	96,230,503 - 96,231,029	NCBI	Rnor6.0
Rnor_5.0	13	100,671,628 - 100,672,154	UniSTS	Rnor5.0
Celera	13	89,637,362 - 89,637,888	UniSTS
Cytogenetic Map	13	q26	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	107975663	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	107975663	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	107975663	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	12193394	108478121	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	24502279	108770533	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	35301263	107975663	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	36147533	99968921	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	36147533	99968921	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	51569248	96569248	Rat
1641901	Alcrsp6	Alcohol response QTL 6			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	13	57903612	102903612	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	62975663	107975663	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	66971778	111971778	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	71230858	114033958	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	71230858	114033958	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	72583716	114033958	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	77694986	114033958	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	79567081	103613733	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	80403559	108770687	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	86833393	114033958	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	380
Count of miRNA genes:	216
Interacting mature miRNAs:	251
Transcripts:	ENSRNOT00000044477
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High									4
Medium	3	43	57	41	19	41	8	11	70	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_057139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC072529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D14048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000044477 ⟹ ENSRNOP00000046783

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	96,229,688 - 96,238,474 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078061 ⟹ ENSRNOP00000070912

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	96,225,912 - 96,238,572 (-)	Ensembl

RefSeq Acc Id:

NM_057139 ⟹ NP_476480

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	90,077,755 - 90,086,544 (-)	NCBI
Rnor_6.0	13	96,229,685 - 96,238,474 (-)	NCBI
Rnor_5.0	13	100,663,218 - 100,679,960 (-)	NCBI
RGSC_v3.4	13	93,978,865 - 93,987,654 (-)	RGD
Celera	13	89,636,544 - 89,645,333 (-)	RGD

Sequence:

show sequence

CTTGCCTCGCGAACTCGGTGAAAGGAATTGGCGCCGTTCGACACCAGGCGGGTCCGTTCTGCAG
CAGCACTCAGCTATCTCCAGCAGCAGCCGCCGCCCGGGCCGACCAGCAGCCGCCGCCACAGGCC
GAGGGAGCCAGCAGTCAGCGGTGAACCCGGGCCCTCACCATGAGTTCTTCGCCTGTTAATGTCA
AGAAGCTGAAGGTGTCGGAGCTGAAGGAGGAGCTCAAGAAGCGGCGCCTCTCAGACAAGGGCCT
CAAGGCCGATCTCATGGATCGACTCCAGGCCGCGCTGGACAACGAGGCAGGAGGCCGCCCCGCC
ATGGAGCCCGGGAACGGCAGCCTCGACCTGGGTGGCGATGCGGCCGGGCGCTCGGGAGCAGGCC
TAGAGCAGGAGGCCGCGGCCGGCGCCGAAGACGATGAGGAGGAGGAGGGCATTGCCGCTCTGGA
CGGCGACCAGATGGAGCTGGGCGAGGAGAACGGGGCGGCGGGGGCGGCTGACGCGGGCGCGATG
GAGGAGGAGGAGGCGGCGTCGGAAGACGAGAACGGCGACGACCAGGGCTTCCAGGAGGGGGAGG
ACGAGCTCGGCGACGAAGAGGAGGGCGCGGGCGACGAGAACGGCCACGGGGAGCAGCAGTCCCA
ACCGCCGGCGGCGGCGCAGCAGGCTTCTCAGCAGCGCGGGCCTGGCAAGGAGGCCGCGGGGAAA
AGCAGCGGCCCCACCTCGCTCTTCGCGGTGACGGTGGCGCCGCCAGGGGCGAGGCAGGGCCAAC
AGCAGGCGGGAGGAGACGGCAAAACAGAACAGAAAGCTGGAGATAAAAAGAGAGGTGTTAAAAG
ACCCCGGGAAGATCATGGCCGAGGATATTTTGAGTACATTGAAGAAAACAAGTACAGCAGAGCC
AAGTCTCCTCAGCCACCTGTTGAAGAAGAAGACGAACACTTCGATGACACAGTGGTTTGTCTTG
ATACTTATAATTGTGATCTGCATTTTAAAATATCAAGAGACCGTCTCAGTGCTTCTTCCCTTAC
TATGGAGAGTTTCGCTTTTCTTTGGGCTGGAGGAAGAGCTTCTTATGGTGTGTCAAAAGGCAAA
GTCTGCTTTGAGATGAAGGTAACAGAGAAGATTCCAGTAAGACATTTATATACAAAAGATATTG
ATATACATGAAGTTCGGATTGGCTGGTCACTAACCACAAGTGGAATGTTGCTTGGTGAAGAAGA
ATTTTCTTATGGGTATTCTCTGAAAGGAATAAAAACCTGCAACTGTGAGACAGAAGATTATGGA
GAGAAGTTTGATGAAAATGATGTGATTACGTGCTTTGCTAACTTTGAGACTGATGAAGTTGAAC
TCTCTTACGCAAAGAATGGACAAGATCTTGGTGTTGCCTTTAAGATTAGTAAGGAAGTTCTTGC
TGACCGGCCATTATTCCCCCATGTTCTCTGCCATAACTGTGCAGTTGAGTTTAATTTTGGTCAA
AAGGAAAAGCCATACTTTCCAATACCTGAAGACTGTACTTTTATCCAAAATGTCCCATTAGAGG
ACCGAGTCAGAGGACCAAAAGGACCTGAAGAGAAGAAGGATTGTGAAGTTGTGATGATGATTGG
CTTGCCAGGAGCTGGAAAAACTACCTGGGTTACTAAACATGCAGCTGAAAACCCTGGGAAATAT
AACATTCTTGGAACAAACACTATTATGGACAAAATGATGGTGGCAGGCTTTAAGAAGCAAATGG
CAGATACTGGAAAACTGAACACACTGTTGCAGAGAGCCCCACAGTGTCTTGGCAAGTTTATTGA
GATTGCTGCCCGAAAGAAGCGAAATTTTATTCTGGATCAGACAAATGTGTCTGCTGCTGCCCAG
AGGAGAAAAATGTGCCTGTTTGCAGGCTTCCAACGAAAAGCCGTGGTCGTTTGCCCAAAAGACG
AAGACTATAAGCAGAGGACACAGAAGAAAGCGGAAGTAGAGGGGAAAGACCTACCAGAGCATGC
TGTCCTCAAGATGAAAGGAAACTTCACCCTTCCAGAGGTTGCAGAGTGTTTTGATGAAATAACC
TATGTTGAACTTCAGAAGGAGGAAGCCCAGAAGCTTTTGGAGCAATATAAAGAAGAAAGCAAAA
AGGCACTGCCACCAGAAAAAAAGCAAAACACTGGCTCAAAGAAAAGCAATAAAAATAAGAGTGG
CAAGAACCAGTTCAACAGAGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGTGGC
AATTTCAGAGGGGGAGCTCCTGGGAATCGTGGTGGATATAATAGGAGAGGCAACATGCCCCAGA
GAGGTGGTGGCGGCGGAAGTGGTGGAATTGGCTATCCATACCCGCGTGGCCCTGTCTTTCCTGG
CCGAGGTGGTTACTCAAACAGAGGAAATTACAACAGAGGTGGAATGCCCAACAGAGGGAACTAT
AACCAGAACTTCAGAGGACGAGGAAATAATCGTGGCTACAAAAATCAATCTCAGGGCTACAACC
AGTGGCAGCAGGGTCAATTCTGGGGTCAGAAGCCATGGAGTCAGCATTATCACCAAGGATATTA
TTGAATACCCAAATAAAACGAACTGATACATATTTCTCCAAAACCTTCACAAGAAGTCGACTGT
TTTCTTTAGTAGGCTAACTTTTTAAACATTCCACAAGAGGAAGTGCCTGCGGGTTCCTTTTTTA
GAAGCTTTGTGGGTTGATTTTTTTTTCTTTTCTTTTTTGTACATTTTTAATTGCAGTTTTAAAG
TGAATCGTAAGAGAACCTCAGCATTGTGCACGATAAGAGAATGTGTCAGTATTTCAGGGTTCTA
CATTTTATCTGTAAAATGTGACTTTTTTTTTTTATCACAACAAAAGTAAAATGTTGCTTTGTAC
CTGGTGTCTTTTATTAAGCATTTACTCCCCCATTTCTCACAGAGAATAACAGTCGGGAGTCATT
GTCACAATGAAATAGCAATGTCAGCAACCAGATTCATGGAAGGACTGAGGGTCCTCATGAATGG
CATTAAGATTCTGTACTGCTCATAATACACTCCATCCTCTCTAGATGGCCGGGCAATAGTGGAG
GGGTAATCTCTGACAAAAAAAAAAGGGAAGGCTATTTTTTTTCTGCTTAACAATGGAATTGGCA
TAATTGGGATTGAAGATAAAATTTGGAACCAAGACTGAGAAGATGGAGTGTATGTAGAAGGGCT
GTTTAAAAATGTAAACTTGGTTGCATTATATGTGGAGGCTCAAACTTGTGAAGGTTAAATACCA
CAAAATTTTCCATTTGTTCTGCATTTTGATTCTGAAAAGAAAGCTGGCTTTGCCCATTTTCTTA
TTAAAAAACTTGTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250311 ⟹ XP_006250373

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	96,222,093 - 96,238,845 (-)	NCBI
Rnor_5.0	13	100,663,218 - 100,679,960 (-)	NCBI

Sequence:

show sequence

CCTAAACGAAGATGGAAGAAAGGAGGCTGTTCTCGAGTGGGAAATGCAAGGTGAGGACTGAAGG
CGGATGGAGGAGAGCGTCCTCCAGGATACAGAAGACAGAGCGCCGATGGAGCGCGGCGACCCAA
GAGCCGGAAAGGCCGGCGGCCACTGCGGCGGGTCCGTTAAACCGAAAGGCCGCTTCCAGAGCCT
CCATTTGCTCGGCCCGGCCCAGCGCGGAGGTCGCGCCGTGGGGGCGGGGCGGGGCCTGCGCGCG
CAGTCGCCCTAGCGGGCCTCGCCTCGGCAGGGGGCGGGGCGCCTATATTACGTGCGCGGCGCCG
CCCCTGCGAGAGGACGTTGCGTGCTCGCTCGCGCCAGGCGAGTCTCCGCGTCTTGCCTCGCGAA
CTCGGTGAAAGGAATTGGCGCCGTTCGACACCAGGCGGGTCCGTTCTGCAGCAGCACTCAGCTA
TCTCCAGCAGCAGCCGCCGCCCGGGCCGACCAGCAGCCGCCGCCACAGGCCGAGGGAGCCAGCA
GTCAGCGGTGAACCCGGGCCCTCACCATGAGTTCTTCGCCTGTTAATGTCAAGAAGCTGAAGGT
GTCGGAGCTGAAGGAGGAGCTCAAGAAGCGGCGCCTCTCAGACAAGGGCCTCAAGGCCGATCTC
ATGGATCGACTCCAGGCCGCGCTGGACAACGAGGCAGGAGGCCGCCCCGCCATGGAGCCCGGGA
ACGGCAGCCTCGACCTGGGTGGCGATGCGGCCGGGCGCTCGGGAGCAGGCCTAGAGCAGGAGGC
CGCGGCCGGCGCCGAAGACGATGAGGAGGAGGAGGGCATTGCCGCTCTGGACGGCGACCAGATG
GAGCTGGGCGAGGAGAACGGGGCGGCGGGGGCGGCTGACGCGGGCGCGATGGAGGAGGAGGAGG
CGGCGTCGGAAGACGAGAACGGCGACGACCAGGGCTTCCAGGAGGGGGAGGACGAGCTCGGCGA
CGAAGAGGAGGGCGCGGGCGACGAGAACGGCCACGGGGAGCAGCAGTCCCAACCGCCGGCGGCG
GCGCAGCAGGCTTCTCAGCAGCGCGGGCCTGGCAAGGAGGCCGCGGGGAAAAGCAGCGGCCCCA
CCTCGCTCTTCGCGGTGACGGTGGCGCCGCCAGGGGCGAGGCAGGGCCAACAGCAGGCGGGAGG
AGACGGCAAAACAGAACAGAAAGCTGGAGATAAAAAGAGAGGTGTTAAAAGACCCCGGGAAGAT
CATGGCCGAGGATATTTTGAGTACATTGAAGAAAACAAGTACAGCAGAGCCAAGTCTCCTCAGC
CACCTGTTGAAGAAGAAGACGAACACTTCGATGACACAGTGGTTTGTCTTGATACTTATAATTG
TGATCTGCATTTTAAAATATCAAGAGACCGTCTCAGTGCTTCTTCCCTTACTATGGAGAGTTTC
GCTTTTCTTTGGGCTGGAGGAAGAGCTTCTTATGGTGTGTCAAAAGGCAAAGTCTGCTTTGAGA
TGAAGGTAACAGAGAAGATTCCAGTAAGACATTTATATACAAAAGATATTGATATACATGAAGT
TCGGATTGGCTGGTCACTAACCACAAGTGGAATGTTGCTTGGTGAAGAAGAATTTTCTTATGGG
TATTCTCTGAAAGGAATAAAAACCTGCAACTGTGAGACAGAAGATTATGGAGAGAAGTTTGATG
AAAATGATGTGATTACGTGCTTTGCTAACTTTGAGACTGATGAAGTTGAACTCTCTTACGCAAA
GAATGGACAAGATCTTGGTGTTGCCTTTAAGATTAGTAAGGAAGTTCTTGCTGACCGGCCATTA
TTCCCCCATGTTCTCTGCCATAACTGTGCAGTTGAGTTTAATTTTGGTCAAAAGGAAAAGCCAT
ACTTTCCAATACCTGAAGACTGTACTTTTATCCAAAATGTCCCATTAGAGGACCGAGTCAGAGG
ACCAAAAGGACCTGAAGAGAAGAAGGATTGTGAAGTTGTGATGATGATTGGCTTGCCAGGAGCT
GGAAAAACTACCTGGGTTACTAAACATGCAGCTGAAAACCCTGGGAAATATAACATTCTTGGAA
CAAACACTATTATGGACAAAATGATGGTGGCAGGCTTTAAGAAGCAAATGGCAGATACTGGAAA
ACTGAACACACTGTTGCAGAGAGCCCCACAGTGTCTTGGCAAGTTTATTGAGATTGCTGCCCGA
AAGAAGCGAAATTTTATTCTGGATCAGACAAATGTGTCTGCTGCTGCCCAGAGGAGAAAAATGT
GCCTGTTTGCAGGCTTCCAACGAAAAGCCGTGGTCGTTTGCCCAAAAGACGAAGACTATAAGCA
GAGGACACAGAAGAAAGCGGAAGTAGAGGGGAAAGACCTACCAGAGCATGCTGTCCTCAAGATG
AAAGGAAACTTCACCCTTCCAGAGGTTGCAGAGTGTTTTGATGAAATAACCTATGTTGAACTTC
AGAAGGAGGAAGCCCAGAAGCTTTTGGAGCAATATAAAGAAGAAAGCAAAAAGGCACTGCCACC
AGAAAAAAAGCAAAACACTGGCTCAAAGAAAAGCAATAAAAATAAGAGTGGCAAGAACCAGTTC
AACAGAGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGTGGCAATTTCAGAGGGG
GAGCTCCTGGGAATCGTGGTGGATATAATAGGAGAGGCAACATGCCCCAGAGAGGTGGTGGCGG
CGGAAGTGGTGGAATTGGCTATCCATACCCGCGTGGCCCTGTCTTTCCTGGCCGAGGTGGTTAC
TCAAACAGAGGAAATTACAACAGAGGTGGAATGCCCAACAGAGGGAACTATAACCAGAACTTCA
GAGGACGAGGAAATAATCGTGGCTACAAAAATCAATCTCAGGGCTACAACCAGTGGCAGCAGGG
TTCTGTCCATGTGAATGTGCTGTGTGAAGAGTACAGGGGCCCAACTAAGTGTGTTCCAGTGATT
CCATAGGTACTCTAATTAATTGCTGCTTGTATGTTTACCAGTTTGCTAGGCCTCCAGGACCACC
TTACTCAAAGCTGTTGGCAACCAAACGGACAGGACGTACATCTTCTGAAAGATTTTCTAACTTT
GCCTTTGTACATCAGAAGTGTAAAGACTTTAACCAAGTCTAAACTTTTACCCTTAGACATTTAC
CCTTAGAGGCCTATTCATTGCAAAACAGTGACCTTTAGGGCACTTCTGCTCTTGTTTACCAAGT
TTTTTTCCTGTCTTGACCAGGCTGTGGTCTCTTCTGAGTAGTGAAGTGAATACATCCTTAGAAG
TCCAAAAATTAGATGAAGAAACTCAAGATTCTGAAGTTAATGGGAAACGTGGTGTGAGCTTTGG
TTATGCCACCCTCAGAGCACTTACTCTTGTAAAACATAAGCTAGAGTCACAGCTAGTCAAGTCC
TAAGTATGCTGTAAGTTCCATGGCAAAGCATGTCTTCATGATACAGAAGCATTTACTAGGGCGC
ATCTTTGCAGTCCATGCATCCTCTTAAGGGGTGCCATACACAGGTAGTTTAGAAACTTTGTAAG
CTTTGTTACATTTAGAAATGTTTAACATTTCATTTTAGTCAATGTCTTCATTAGAAACCGGAAG
GTTAGCCTAAGTGAACATACAACTTTCTACCTAGTAGTGCTTTTAACTAACACATTGAAAAATA
TACTAAATTTTTCTTGCTGCAACAGCTTTGCTCTCAAATATATTAAAAATTGAACTTGATATAA
CATGTATACAGTACCAGTATTTGGGTGGTAGTAGTGGATTCTGGCTATTATATTGACCTGATAT
AATATTTATTAGAACATTAACCTGCTTCAAAATTGATTTTAGAGAACTGTTACAAGTCAGAATT
ATAGAAATTGTTTAATTTTCCTATTTGCTAAGATCTGCGTACCCAAAGAATAGTTATATTTAAC
ATGACTTTTAAAGGGGTGCGTTGACACCTGTCAGATTTTTATCTAGGAATAGAAGGATTCAAAC
CCTATTTGATCCTTAGCTCTTTGCTGAAAAGTGCATAAACAGGAATCCTGAATTTATTATATAG
ACCTCCGCATTATATAATCGAAGCAAAGGGAAACCACCGATGGAGTTAGAGGTACGTAGACTAA
AAAGATGCTTGCAAATCAAATACTGGTTTTAGCATAGTTGAGTTTTAATTGTGGCCAAGCTCAG
TCAATAAGTCACAAGTCCAGAAAAAAAGCTGTTCCTATTAAATCTCCCCAGGTCCTTTTACTAA
GACGGAAAAACAAGGAATCAAAGAGGGAGGGGTTGAGGGGGGGGGAAGGAATTAAAGCCTAGGA
ATGGTAGATAAGCTATCCCAAAACTTCAAAACTAACACTACGATTCTATTTTAATCAGCTTTTG
GCTGGTACCTACTGCTATATCACCTAGTATGACATTTCGGGATTATCGGGACAATGAAGGAAAC
TGCACAGAGGGCAAAGAAGGTAGGTTGAATTTAAATTTTTCAGTGTAAAAGTGTGGGTTGGGTG
GGCACATTGTCTTAGAATTTACCTAGTAGCATATAGATAGCTATGGAATGCAATTGTGCCTGGC
CTTTTGTGAAATGCAGGGCTTGTGTGTTACATGGGCTGTGACTAGAAGTCATCTACAGAAGATA
AAACACCAGAAGTTTCTAAGGAAAATGTAGTTATTAAACATTTCTGGTGTTTAGGAGGCTCAGC
CTAGTTGTGTAGATGGGATGAAAGGTTGAATTAAGCTAGAGACATGGTAGTTCACACCTGTAAT
CCCAACACTGGAATACTGAGGTAGGCTAGGTTACAGGGAAATGGTCAGAGTATAATATTAAAGG
AATCAGTGGTCATGGGATTATAGATCTTTAAAATGGCATGATTCAGGCAAATCAAGGAAACTAA
ATGCTTTGTGACTCTTTTTATCCAGTTGTGCTGCTGTGAAAATGAACTTTGTAAGTAGTGAAGA
TGTTACCAGCCAAGAGAGGTCTCTTTCATGGTAAGATATAACTGCACCATGGTAAAGCTGGCAG
AATTCCAGTCTCTGGTTTTTCACAGTGACAATGGCTGAGAGCATAAGTGCACTGTCCACAGCTT
GTTAAAATACTTGATTGACCTACTACAAACTCAACTTTATCAAGGATGAAATAGTAGGGCTACC
AGATGCAAGGCTTCTTAGTGTCCATCGTTAACAGTCTTTCCTGTTGAAGCTTCAATAGACAAAG
TCCTAGGCCAGTAATAGATACATATCCCTGCTCAGGTGTGATTTCTCCTTCAATCTGATGTACT
TTGTGAACAGATAATGAATCTGACACCTTAGGAAGAGCAGGACCCTGACTCCCATGTGTTTGAC
ATGGCAGTTCTGTGATACATGACAGACATAACTTACTGGCAGTAAACAAAAGGATTTCATGTAG
GTAACAATACAGTTGACACACTTGAGTTTAATTTATGGTTGATTCACAAGGAAGCATAGTTGTG
GGTTTAAAGCTGATGAAGTCGCTCAGCTGCTGTTACTGCTCTTCGTTTTTCTTTCAGGATCAAG
GTGGGTGCTTTCATATAAAATCTTGTTTTTTATTCCTTCTCTGGCAATTCTTTCCTGGATCCTC
TGCTTAGCAAAATTATACCTACAGTGGAACCTTATAAGAAAGAAAATGAGTAAGTTACTAGTTC
TATATGAATAACCTAAGGAGTGATTATGTAACCAAAATGCTAAAAAGATGACTACTATCCCAAA
ACTAAATTTAAAGGTATTTTGTCAAAATACAAATACTTTTTATAGCTACATAAGATATAAATTT
CTGTCTTAGAGTAAGTATACCTGCTGGAATCTCTTGGGTCTGACTCCCTTTATTTACTCAACTT
CATATTTTAATGGAATTCTGCCACTACTGTCAAACATTCAATGGATAATGAGGTTTATGTATTT
ACAGGGAAAAAAAAAAAGCCCAAACCAAAACAACTGATGGCTCATGCCTTTTTAATCCCAGCAC
TACTGAGAGAGACCCTGTCTCAATTTGCATGTGCACACATACCCACCCCATATTTATTGAGTGA
ATGTTGTTACTTCTCCTGACTTTCCTGGAATATCCAGCAAACATACCAGCATCCTAAAGTCACC
AGGATAAATCCTCCTACTCCAACATCACAGGATCTTCTAATTCTGCCTATCAAAAACAAGCATG
GTCGGCATAAGTTATATTCTGTGTGGGAAACCCATAGTGGACATGTTTTAATTTAAAAAAAATA
CACTCACTGGTCACCAAGAAATGTCCAAGTCCAGTCACAATAGATCCTAGTGAGCCATACAGTA
TAGATTCTCGAGCGCATGGAGTGTTCTCAACATCTAAAATACCTAGGAGCTTGAAGGGCTAGGA
TAAAATGAACAAGAAAATAGTTCATGGCAACATGGATCCCCACTCCATTTTTAATTAACACTAA
ACTTTACCAGTCAGCTAACTTGTGTGTTGAATCTGCCACTTTGGGATTTATTTACTCCAGCATT
TGAATCTAGTGAACATAGTAATTAACCTCTAGCATGAAGTGACCAGTCTTCCAAGGACATGTCA
CTCAGCCAGTCATAGATGGGGGTCAAAACAGACTTTATTTCATTCTGTTCATGTGAGTCTTAGA
CATCTGGTGGTTTTGAGTGTAATGTAATCCCAGCAATCAGGAAACCACAGCAAGAAGATTGCTG
TGAATTGGAGGTCAGACTGACTGAGCTCTGAAAGTCTGAGAAGCAAGACTACACACAACTGTGT
AACAACATGTGTGAAAAGAAGCCATCCTCTATTGGATCCCAGCCCTGGAAAACAAATGTTTTCT
ACAGTGCCACTCAGTACAGCTAGAGGATTATTGCATAAGAAATGGAACCTATACTGGTGGGGAA
TGGAGTAAAAGACTTCAGATCCTGTTAAAGATAGGGTAGAACTGCACTTCCCTTAGCTCAAGAA
TCTGCTTGAAGATAACATGTAACTTGGTTTTCATTAAAGTACAATTCTTTCCCAGA

hide sequence

RefSeq Acc Id:

XM_039090285 ⟹ XP_038946213

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	90,069,058 - 90,086,905 (-)	NCBI

RefSeq Acc Id:

XR_005492193

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	90,069,058 - 90,086,905 (-)	NCBI

RefSeq Acc Id:

XR_359126

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	96,222,093 - 96,238,845 (-)	NCBI
Rnor_5.0	13	100,663,218 - 100,679,960 (-)	NCBI

Sequence:

show sequence

CCTAAACGAAGATGGAAGAAAGGAGGCTGTTCTCGAGTGGGAAATGCAAGGTGAGGACTGAAGG
CGGATGGAGGAGAGCGTCCTCCAGGATACAGAAGACAGAGCGCCGATGGAGCGCGGCGACCCAA
GAGCCGGAAAGGCCGGCGGCCACTGCGGCGGGTCCGTTAAACCGAAAGGCCGCTTCCAGAGCCT
CCATTTGCTCGGCCCGGCCCAGCGCGGAGGTCGCGCCGTGGGGGCGGGGCGGGGCCTGCGCGCG
CAGTCGCCCTAGCGGGCCTCGCCTCGGCAGGGGGCGGGGCGCCTATATTACGTGCGCGGCGCCG
CCCCTGCGAGAGGACGTTGCGTGCTCGCTCGCGCCAGGCGAGTCTCCGCGTCTTGCCTCGCGAA
CTCGGTGAAAGGAATTGGCGCCGTTCGACACCAGGCGGGTCCGTTCTGCAGCAGCACTCAGCTA
TCTCCAGCAGCAGCCGCCGCCCGGGCCGACCAGCAGCCGCCGCCACAGGCCGAGGGAGCCAGCA
GTCAGCGGTGAACCCGGGCCCTCACCATGAGTTCTTCGCCTGTTAATGTCAAGAAGCTGAAGGT
GTCGGAGCTGAAGGAGGAGCTCAAGAAGCGGCGCCTCTCAGACAAGGGCCTCAAGGCCGATCTC
ATGGATCGACTCCAGGCCGCGCTGGACAACGAGGCAGGAGGCCGCCCCGCCATGGAGCCCGGGA
ACGGCAGCCTCGACCTGGGTGGCGATGCGGCCGGGCGCTCGGGAGCAGGCCTAGAGCAGGAGGC
CGCGGCCGGCGCCGAAGACGATGAGGAGGAGGAGGGCATTGCCGCTCTGGACGGCGACCAGATG
GAGCTGGGCGAGGAGAACGGGGCGGCGGGGGCGGCTGACGCGGGCGCGATGGAGGAGGAGGAGG
CGGCGTCGGAAGACGAGAACGGCGACGACCAGGGCTTCCAGGAGGGGGAGGACGAGCTCGGCGA
CGAAGAGGAGGGCGCGGGCGACGAGAACGGCCACGGGGAGCAGCAGTCCCAACCGCCGGCGGCG
GCGCAGCAGGCTTCTCAGCAGCGCGGGCCTGGCAAGGAGGCCGCGGGGAAAAGCAGCGGCCCCA
CCTCGCTCTTCGCGGTGACGGTGGCGCCGCCAGGGGCGAGGCAGGGCCAACAGCAGGCGGGAGG
AGACGGCAAAACAGAACAGAAAGCTGGAGATAAAAAGAGAGGTGTTAAAAGACCCCGGGAAGAT
CATGGCCGAGGATATTTTGAGTACATTGAAGAAAACAAGTACAGCAGAGCCAAGTCTCCTCAGC
CACCTGTTGAAGAAGAAGACGAACACTTCGATGACACAGTGGTTTGTCTTGATACTTATAATTG
TGATCTGCATTTTAAAATATCAAGAGACCGTCTCAGTGCTTCTTCCCTTACTATGGAGAGTTTC
GCTTTTCTTTGGGCTGGAGGAAGAGCTTCTTATGGTGTGTCAAAAGGCAAAGTCTGCTTTGAGA
TGAAGGTAACAGAGAAGATTCCAGTAAGACATTTATATACAAAAGATATTGATATACATGAAGT
TCGGATTGGCTGGTCACTAACCACAAGTGGAATGTTGCTTGGTGAAGAAGAATTTTCTTATGGG
TATTCTCTGAAAGGAATAAAAACCTGCAACTGTGAGACAGAAGATTATGGAGAGAAGTTTGATG
AAAATGATGTGATTACGTGCTTTGCTAACTTTGAGACTGATGAAGTTGAACTCTCTTACGCAAA
GAATGGACAAGATCTTGGTGTTGCCTTTAAGATTAGTAAGGAAGTTCTTGCTGACCGGCCATTA
TTCCCCCATGTTCTCTGCCATAACTGTGCAGTTGAGTTTAATTTTGGTCAAAAGGAAAAGCCAT
ACTTTCCAATACCTGAAGACTGTACTTTTATCCAAAATGTCCCATTAGAGGACCGAGTCAGAGG
ACCAAAAGGACCTGAAGAGAAGAAGGATTGTGAAGTTGTGATGATGATTGGCTTGCCAGGAGCT
GGAAAAACTACCTGGGTTACTAAACATGCAGCTGAAAACCCTGGGAAATATAACATTCTTGGAA
CAAACACTATTATGGACAAAATGATGGTGGCAGGCTTTAAGAAGCAAATGGCAGATACTGGAAA
ACTGAACACACTGTTGCAGAGAGCCCCACAGTGTCTTGGCAAGTTTATTGAGATTGCTGCCCGA
AAGAAGCGAAATTTTATTCTGGATCAGACAAATGTGTCTGCTGCTGCCCAGAGGAGAAAAATGT
GCCTGTTTGCAGGCTTCCAACGAAAAGCCGTGGTCGTTTGCCCAAAAGACGAAGACTATAAGCA
GAGGACACAGAAGAAAGCGGAAGTAGAGGGGAAAGACCTACCAGAGCATGCTGTCCTCAAGATG
AAAGGAAACTTCACCCTTCCAGAGGTTGCAGAGTGTTTTGATGAAATAACCTATGTTGAACTTC
AGAAGGAGGAAGCCCAGAAGCTTTTGGAGCAATATAAAGAAGAAAGCAAAAAGGCACTGCCACC
AGAAAAAAAGCAAAACACTGGCTCAAAGAAAAGCAATAAAAATAAGAGTGGCAAGAACCAGTTC
AACAGAGGTGGTGGCCATAGAGGACGTGGAGGATTCAATATGCGTGGTGGCAATTTCAGAGGGG
GAGCTCCTGGGAATCGTGGTGGATATAATAGGAGAGGCAACATGCCCCAGAGAGGTGGTGGCGG
CGGAAGTGGTGGAATTGGCTATCCATACCCGCGTGGCCCTGTCTTTCCTGGCCGAGGTGGTTAC
TCAAACAGAGGAAATTACAACAGAGGTGGAATGCCCAACAGAGGGAACTATAACCAGAACTTCA
GAGGACGAGGAAATAATCGTGGCTACAAAAATCAATCTCAGGGCTACAACCAGTGGCAGCAGGG
TTCTGTCCATGTGAATGTGCTGTGTGAAGAGTACAGGGGCCCAACTAAGTGTGTTCCAGTGATT
CCATAGGTACTCTAATTAATTGCTGCTTGTATGTTTACCAGTTTGCTAGGCCTCCAGGACCACC
TTACTCAAAGCTGTTGGCAACCAAACGGACAGGACGTACATCTTCTGAAAGATTTTCTAACTTT
GCCTTTGTACATCAGAAGTGTAAAGACTTTAACCAAGTCTAAACTTTTACCCTTAGACATTTAC
CCTTAGAGGCCTATTCATTGCAAAACAGTGACCTTTAGGGCACTTCTGCTCTTGTTTACCAAGT
TTTTTTCCTGTCTTGACCAGGCTGTGGTCTCTTCTGAGTAGTGAAGTGAATACATCCTTAGAAG
TCCAAAAATTAGATGAAGAAACTCAAGATTCTGAAGTTAATGGGAAACGTGGTGTGAGCTTTGG
TTATGCCACCCTCAGAGCACTTACTCTTGTAAAACATAAGCTAGAGTCACAGCTAGTCAAGTCC
TAAGTATGCTGTAAGTTCCATGGCAAAGCATGTCTTCATGATACAGAAGCATTTACTAGGGCGC
ATCTTTGCAGTCCATGCATCCTCTTAAGGGGTGCCATACACAGGTAGTTTAGAAACTTTGTAAG
CTTTGTTACATTTAGAAATGTTTAACATTTCATTTTAGTCAATGTCTTCATTAGAAACCGGAAG
GTTAGCCTAAGTGAACATACAACTTTCTACCTAGTAGTGCTTTTAACTAACACATTGAAAAATA
TACTAAATTTTTCTTGCTGCAACAGCTTTGCTCTCAAATATATTAAAAATTGAACTTGATATAA
CATGTATACAGTACCAGTATTTGGGTGGTAGTAGTGGATTCTGGCTATTATATTGACCTGATAT
AATATTTATTAGAACATTAACCTGCTTCAAAATTGATTTTAGAGAACTGTTACAAGTCAGAATT
ATAGAAATTGTTTAATTTTCCTATTTGCTAAGATCTGCGTACCCAAAGAATAGTTATATTTAAC
ATGACTTTTAAAGGGGTGCGTTGACACCTGTCAGATTTTTATCTAGGAATAGAAGGATTCAAAC
CCTATTTGATCCTTAGCTCTTTGCTGAAAAGTGCATAAACAGGAATCCTGAATTTATTATATAG
ACCTCCGCATTATATAATCGAAGCAAAGGGAAACCACCGATGGAGTTAGAGGTACGTAGACTAA
AAAGATGCTTGCAAATCAAATACTGGTTTTAGCATAGTTGAGTTTTAATTGTGGCCAAGCTCAG
TCAATAAGTCACAAGTCCAGAAAAAAAGCTGTTCCTATTAAATCTCCCCAGGTCCTTTTACTAA
GACGGAAAAACAAGGAATCAAAGAGGGAGGGGTTGAGGGGGGGGGAAGGAATTAAAGCCTAGGA
ATGGTAGATAAGCTATCCCAAAACTTCAAAACTAACACTACGATTCTATTTTAATCAGCTTTTG
GCTGGTACCTACTGCTATATCACCTAGTATGACATTTCGGGATTATCGGGACAATGAAGGAAAC
TGCACAGAGGGCAAAGAAGTTGTGCTGCTGTGAAAATGAACTTTGTAAGTAGTGAAGATGTTAC
CAGCCAAGAGAGGTCTCTTTCATGGTAAGATATAACTGCACCATGGTAAAGCTGGCAGAATTCC
AGTCTCTGGTTTTTCACAGTGACAATGGCTGAGAGCATAAGTGCACTGTCCACAGCTTGTTAAA
ATACTTGATTGACCTACTACAAACTCAACTTTATCAAGGATGAAATAGTAGGGCTACCAGATGC
AAGGCTTCTTAGTGTCCATCGTTAACAGTCTTTCCTGTTGAAGCTTCAATAGACAAAGTCCTAG
GCCAGTAATAGATACATATCCCTGCTCAGGTGTGATTTCTCCTTCAATCTGATGTACTTTGTGA
ACAGATAATGAATCTGACACCTTAGGAAGAGCAGGACCCTGACTCCCATGTGTTTGACATGGCA
GTTCTGTGATACATGACAGACATAACTTACTGGCAGTAAACAAAAGGATTTCATGTAGGTAACA
ATACAGTTGACACACTTGAGTTTAATTTATGGTTGATTCACAAGGAAGCATAGTTGTGGGTTTA
AAGCTGATGAAGTCGCTCAGCTGCTGTTACTGCTCTTCGTTTTTCTTTCAGGATCAAGGTGGGT
GCTTTCATATAAAATCTTGTTTTTTATTCCTTCTCTGGCAATTCTTTCCTGGATCCTCTGCTTA
GCAAAATTATACCTACAGTGGAACCTTATAAGAAAGAAAATGAGTAAGTTACTAGTTCTATATG
AATAACCTAAGGAGTGATTATGTAACCAAAATGCTAAAAAGATGACTACTATCCCAAAACTAAA
TTTAAAGGTATTTTGTCAAAATACAAATACTTTTTATAGCTACATAAGATATAAATTTCTGTCT
TAGAGTAAGTATACCTGCTGGAATCTCTTGGGTCTGACTCCCTTTATTTACTCAACTTCATATT
TTAATGGAATTCTGCCACTACTGTCAAACATTCAATGGATAATGAGGTTTATGTATTTACAGGG
AAAAAAAAAAAGCCCAAACCAAAACAACTGATGGCTCATGCCTTTTTAATCCCAGCACTACTGA
GAGAGACCCTGTCTCAATTTGCATGTGCACACATACCCACCCCATATTTATTGAGTGAATGTTG
TTACTTCTCCTGACTTTCCTGGAATATCCAGCAAACATACCAGCATCCTAAAGTCACCAGGATA
AATCCTCCTACTCCAACATCACAGGATCTTCTAATTCTGCCTATCAAAAACAAGCATGGTCGGC
ATAAGTTATATTCTGTGTGGGAAACCCATAGTGGACATGTTTTAATTTAAAAAAAATACACTCA
CTGGTCACCAAGAAATGTCCAAGTCCAGTCACAATAGATCCTAGTGAGCCATACAGTATAGATT
CTCGAGCGCATGGAGTGTTCTCAACATCTAAAATACCTAGGAGCTTGAAGGGCTAGGATAAAAT
GAACAAGAAAATAGTTCATGGCAACATGGATCCCCACTCCATTTTTAATTAACACTAAACTTTA
CCAGTCAGCTAACTTGTGTGTTGAATCTGCCACTTTGGGATTTATTTACTCCAGCATTTGAATC
TAGTGAACATAGTAATTAACCTCTAGCATGAAGTGACCAGTCTTCCAAGGACATGTCACTCAGC
CAGTCATAGATGGGGGTCAAAACAGACTTTATTTCATTCTGTTCATGTGAGTCTTAGACATCTG
GTGGTTTTGAGTGTAATGTAATCCCAGCAATCAGGAAACCACAGCAAGAAGATTGCTGTGAATT
GGAGGTCAGACTGACTGAGCTCTGAAAGTCTGAGAAGCAAGACTACACACAACTGTGTAACAAC
ATGTGTGAAAAGAAGCCATCCTCTATTGGATCCCAGCCCTGGAAAACAAATGTTTTCTACAGTG
CCACTCAGTACAGCTAGAGGATTATTGCATAAGAAATGGAACCTATACTGGTGGGGAATGGAGT
AAAAGACTTCAGATCCTGTTAAAGATAGGGTAGAACTGCACTTCCCTTAGCTCAAGAATCTGCT
TGAAGATAACATGTAACTTGGTTTTCATTAAAGTACAATTCTTTCCCAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_476480	(Get FASTA)	NCBI Sequence Viewer
	XP_038946213	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH72529	(Get FASTA)	NCBI Sequence Viewer
	BAA03136	(Get FASTA)	NCBI Sequence Viewer
	EDL94800	(Get FASTA)	NCBI Sequence Viewer
	EDL94801	(Get FASTA)	NCBI Sequence Viewer
	Q6IMY8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_476480 ⟸ NM_057139

- UniProtKB:

Q6IMY8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSSPVNVKKLKVSELKEELKKRRLSDKGLKADLMDRLQAALDNEAGGRPAMEPGNGSLDLGGD
AAGRSGAGLEQEAAAGAEDDEEEEGIAALDGDQMELGEENGAAGAADAGAMEEEEAASEDENGD
DQGFQEGEDELGDEEEGAGDENGHGEQQSQPPAAAQQASQQRGPGKEAAGKSSGPTSLFAVTVA
PPGARQGQQQAGGDGKTEQKAGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEH
FDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPV
RHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFA
NFETDEVELSYAKNGQDLGVAFKISKEVLADRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEDCT
FIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMM
VAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRK
AVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLL
EQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFRGGAPGNRGGY
NRRGNMPQRGGGGGSGGIGYPYPRGPVFPGRGGYSNRGNYNRGGMPNRGNYNQNFRGRGNNRGY
KNQSQGYNQWQQGQFWGQKPWSQHYHQGYY

hide sequence

RefSeq Acc Id:

XP_006250373 ⟸ XM_006250311

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSSSPVNVKKLKVSELKEELKKRRLSDKGLKADLMDRLQAALDNEAGGRPAMEPGNGSLDLGGD
AAGRSGAGLEQEAAAGAEDDEEEEGIAALDGDQMELGEENGAAGAADAGAMEEEEAASEDENGD
DQGFQEGEDELGDEEEGAGDENGHGEQQSQPPAAAQQASQQRGPGKEAAGKSSGPTSLFAVTVA
PPGARQGQQQAGGDGKTEQKAGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEH
FDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPV
RHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFA
NFETDEVELSYAKNGQDLGVAFKISKEVLADRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEDCT
FIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMM
VAGFKKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRK
AVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLL
EQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFRGGAPGNRGGY
NRRGNMPQRGGGGGSGGIGYPYPRGPVFPGRGGYSNRGNYNRGGMPNRGNYNQNFRGRGNNRGY
KNQSQGYNQWQQGSVHVNVLCEEYRGPTKCVPVIP

hide sequence

RefSeq Acc Id:

ENSRNOP00000070912 ⟸ ENSRNOT00000078061

RefSeq Acc Id:

ENSRNOP00000046783 ⟸ ENSRNOT00000044477

RefSeq Acc Id:	XP_038946213 ⟸ XM_039090285
- Peptide Label:	isoform X1

Protein Domains

B30.2/SPRY SAP

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699050

Promoter ID:

EPDNEW_R9574

Type:

initiation region

Name:

Hnrnpu_1

Description:

heterogeneous nuclear ribonucleoprotein U

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	96,238,515 - 96,238,575	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620372	AgrOrtholog
Ensembl Genes	ENSRNOG00000033790	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000046783	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000070912	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044477	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000078061	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.60.120.920	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7096906	IMAGE-MGC_LOAD
InterPro	B30.2/SPRY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	hnRNP_U	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAP_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPRY_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPRY_hnRNP_U	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:117280	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91534	IMAGE-MGC_LOAD
NCBI Gene	117280	ENTREZGENE
PANTHER	PTHR12381:SF11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPRY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hnrnpu	PhenoGen
PROSITE	B302_SPRY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPRY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49899	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF68906	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JZ52_RAT	UniProtKB/TrEMBL
	HNRPU_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-25	Hnrnpu	heterogeneous nuclear ribonucleoprotein U	Hnrpu	heterogeneous nuclear ribonucleoprotein U	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	Hnrpu	heterogeneous nuclear ribonucleoprotein U		transporter protein; system N1 Na+ and H+-coupled glutamine transporter	Name updated	1299863	APPROVED
2002-08-07	Hnrpu	transporter protein; system N1 Na+ and H+-coupled glutamine transporter			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in astroglia, Bergmann glia, and vascular endothelium	632946
gene_expression	expressed at high levels in the postnatal period	632946

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)