Gene: Sox9 (SRY box 9) Rattus norvegicus
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Symbol: Sox9
Name: SRY box 9
Description: Exhibits DNA-binding transcription activator activity, RNA polymerase II-specific, bHLH transcription factor binding activity, and enhancer binding activity; involved in animal organ development, cAMP-mediated signaling, and positive regulation of transcription by RNA polymerase II; localizes to the transcription factor complex; orthologous to human SOX9 (SRY-box 9); INTERACTS WITH (S)-nicotine; 17alpha-ethynylestradiol; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC100361122; LOC363699; SRY; SRY (sex determining region Y)-box 9; SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal); SRY-box containing gene 9; transcription factor SOX-9
Orthologs:
Homo sapiens (human) : SOX9 (SRY-box 9)  HGNC  Alliance
Mus musculus (house mouse) : Sox9 (SRY (sex determining region Y)-box 9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sox9 (SRY-box 9)
Pan paniscus (bonobo/pygmy chimpanzee) : SOX9 (SRY-box 9)
Canis lupus familiaris (dog) : SOX9 (SRY-box 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sox9 (SRY-box 9)
Sus scrofa (pig) : SOX9 (SRY-box 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010101,288,528 - 101,294,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010100,964,754 - 100,970,581 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410102,392,187 - 102,394,256 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110102,408,236 - 102,408,622 (+)NCBI
Celera1096,424,278 - 96,429,703 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sox9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620474
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.