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Gene: Fam172a (family with sequence similarity 172, member A) Rattus norvegicus
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Symbol: Fam172a
Name: family with sequence similarity 172, member A
Description: Predicted to contribute to siRNA binding activity. Predicted to be involved in chromatin silencing by small RNA; neural crest cell development; and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to the endoplasmic reticulum and nucleus. Orthologous to human FAM172A (family with sequence similarity 172 member A); INTERACTS WITH (+)-schisandrin B; bisphenol A; oxaliplatin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC294606; LOC294606; RGD1305526; similar to Sperm 1 POU-domain transcription factor (SPRM-1) ; uncharacterized protein LOC294606
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.024,942,795 - 5,547,744 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl24,942,775 - 5,545,144 (+)Ensembl
Rnor_5.024,923,715 - 5,531,001 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.425,266,234 - 5,742,306 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.125,283,425 - 5,766,266 (+)NCBI
Celera24,004,369 - 4,466,879 (+)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Fam172a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305526
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.