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Gene: Ccdc88c (coiled-coil domain containing 88C) Rattus norvegicus
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Symbol: Ccdc88c
Name: coiled-coil domain containing 88C
Description: Predicted to have several functions, including PDZ domain binding activity; dynein light intermediate chain binding activity; and protein self-association. Predicted to be involved in several processes, including cytoplasmic microtubule organization; protein destabilization; and protein homooligomerization. Predicted to localize to the centrosome and cytoplasm. Human ortholog(s) of this gene implicated in hydrocephalus and spinocerebellar ataxia type 40. Orthologous to human CCDC88C (coiled-coil domain containing 88C); INTERACTS WITH amphetamine; bisphenol A; (-)-demecolcine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC362770; RGD1307429; similar to KIAA1509 protein
Orthologs:
Homo sapiens (human) : CCDC88C (coiled-coil domain containing 88C)  HGNC  Alliance
Mus musculus (house mouse) : Ccdc88c (coiled-coil domain containing 88C)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccdc88c (coiled-coil domain containing 88C)
Pan paniscus (bonobo/pygmy chimpanzee) : CCDC88C (coiled-coil domain containing 88C)
Canis lupus familiaris (dog) : CCDC88C (coiled-coil domain containing 88C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccdc88c (coiled-coil domain containing 88C)
Sus scrofa (pig) : CCDC88C (coiled-coil domain containing 88C)
Chlorocebus sabaeus (African green monkey) : CCDC88C (coiled-coil domain containing 88C)
Heterocephalus glaber (naked mole-rat) : Ccdc88c (coiled-coil domain containing 88C)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.06124,905,811 - 125,028,011 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6124,905,808 - 125,027,553 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06134,125,645 - 134,247,201 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46125,178,886 - 125,298,359 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16125,182,632 - 125,302,112 (-)NCBI
Celera6117,696,139 - 117,817,662 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ccdc88c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307429
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.