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ONTOLOGY REPORT - ANNOTATIONS


Term:stem cell development
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Accession:GO:0048864 term browser browse the term
Definition:The process whose specific outcome is the progression of the stem cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to its specific fate.



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stem cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISO (MGI:2667422|PMID:12843296) RGD PMID:12843296 MGI:2667422 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Msi2 musashi RNA-binding protein 2 involved_in ISO (MGI:2450014|PMID:12407178) RGD PMID:12407178 MGI:2450014 NCBI chr10:73,143,760...73,510,566
Ensembl chr10:73,147,380...73,510,157
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO
GO_REF:0000024
(MGI:2667422|PMID:12843296)
UniProt
RGD
PMID:12843296 GO_REF:0000024 MGI:2667422 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:12843296) RGD PMID:12843296 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (MGI:2667422|PMID:12843296) RGD PMID:12843296 MGI:2667422 NCBI chr 7:116,634,817...116,679,089
Ensembl chr 7:116,634,814...116,679,581
JBrowse link
cardiac neural crest cell development involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (MGI:2179743|PMID:11694877) RGD PMID:11694877 MGI:2179743 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO MGI:1346859 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
cardiac neural crest cell development involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (MGI:4849577|PMID:21098571) RGD PMID:21098571 MGI:4849577 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in ISO (MGI:4413411|PMID:19008477) RGD PMID:19008477 MGI:4413411 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:4354447|PMID:19609448)
Ensembl
RGD
PMID:19609448 GO_REF:0000107 MGI:4354447 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4359139|PMID:19509466)
Ensembl
RGD
PMID:19509466 GO_REF:0000107 MGI:4359139 NCBI chr 3:124,406,794...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (MGI:3805126|PMID:18539270) RGD PMID:18539270 MGI:3805126 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in ISO (MGI:6362316|PMID:31219639) RGD PMID:31219639 MGI:6362316 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111
JBrowse link
G Edn1 endothelin 1 involved_in ISO (MGI:6362316|PMID:31219639) RGD PMID:31219639 MGI:6362316 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
JBrowse link
G Ednra endothelin receptor type A involved_in ISO MGI:1857473|MGI:2687362 (MGI:6362316|PMID:31219639) RGD PMID:31219639 MGI:6362316 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2386570|MGI:3803647 (MGI:4453274|PMID:20144608)
Ensembl
RGD
PMID:20144608 GO_REF:0000107 MGI:4453274 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Nrp1 neuropilin 1 NOT|involved_in ISO (MGI:5693177|PMID:26053665) RGD PMID:26053665 MGI:5693177 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (MGI:2446944|PMID:12464179) RGD PMID:12464179 MGI:2446944 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857265 (MGI:3805126|PMID:18539270) RGD PMID:18539270 MGI:3805126 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
neural crest cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1096359|MGI:1857891|MGI:2679699 (MGI:3612223|PMID:16368932), (MGI:3703483|PMID:17067568) RGD PMID:16368932 PMID:17067568 MGI:3612223 MGI:3703483 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:4366654|PMID:19793887) RGD PMID:19793887 MGI:4366654 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Cdh2 cadherin 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:6216737|PMID:26750727)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26750727 GO_REF:0000024 GO_REF:0000107 MGI:6216737 NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within ISO MGI:2679699 (MGI:3703483|PMID:17067568) RGD PMID:17067568 MGI:3703483 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 acts_upstream_of_or_within ISO MGI:1096359 (MGI:3703483|PMID:17067568) RGD PMID:17067568 MGI:3703483 NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842
JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (MGI:1277800|PMID:9671575), (MGI:3510064|PMID:15327783) RGD PMID:9671575 PMID:15327783 MGI:1277800 MGI:3510064 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
JBrowse link
G Ednra endothelin receptor type A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857473 (MGI:1201717|PMID:9449664), (MGI:3056210|PMID:15306564), (MGI:3510064|PMID:15327783)
Ensembl
RGD
PMID:9449664 PMID:15306564 PMID:15327783 GO_REF:0000107 MGI:1201717 MGI:3056210 MGI:3510064 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Fam172a family with sequence similarity 172, member A involved_in ISO (MGI:6113784|PMID:29311329) RGD PMID:29311329 MGI:6113784 NCBI chr 2:7,553,873...8,018,183
Ensembl chr 2:7,553,891...8,018,162
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1347481 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (MGI:3701735|PMID:16839542) RGD PMID:16839542 MGI:3701735 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO MGI:1857639 (MGI:1277800|PMID:9671575) RGD PMID:9671575 MGI:1277800 NCBI chr16:32,917,826...32,919,880
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Kbtbd8 kelch repeat and BTB domain containing 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:26399832)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26399832 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:127,675,967...127,688,785
Ensembl chr 4:127,676,141...127,687,697
JBrowse link
G Klhl12 kelch-like family member 12 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27716508)
UniProt
Ensembl
RGD
PMID:27716508 GO_REF:0000024 GO_REF:0000107 NCBI chr13:45,899,913...45,933,648
Ensembl chr13:45,899,928...45,933,643
JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO MGI:1346859 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:26399832)
UniProt
RGD
PMID:26399832 GO_REF:0000024 NCBI chr 1:244,921,275...244,932,089
Ensembl chr 1:244,921,377...244,932,088
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS
(PMID:27716508)
GO_REF:0000024
RGD
UniProt
PMID:27716508 GO_REF:0000024 NCBI chr 1:28,966,518...28,982,188
Ensembl chr 1:28,966,518...28,982,189
JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27716508)
UniProt
RGD
PMID:27716508 GO_REF:0000024 NCBI chr 5:142,451,791...142,475,061
Ensembl chr 5:142,451,778...142,475,067
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:12444107) RGD PMID:12444107 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024 MGI:5285157 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:3041881 (MGI:3613316|PMID:15691760) RGD PMID:15691760 MGI:3613316 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in ISO (PMID:26399832) RGD PMID:26399832 NCBI chr18:54,267,015...54,300,324
Ensembl chr18:54,267,026...54,300,324
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (MGI:80519|PMID:8622766) RGD PMID:8622766 MGI:80519 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2651395 (MGI:3045641|PMID:15226263)
Ensembl
RGD
PMID:15226263 GO_REF:0000107 MGI:3045641 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
JBrowse link
G Alx1 ALX homeobox 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220
JBrowse link
G Anxa6 annexin A6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:39,101,395...39,156,483
Ensembl chr10:39,097,109...39,156,433
JBrowse link
G Cfl1 cofilin 1 acts_upstream_of_or_within ISO MGI:3574399 (MGI:3530675|PMID:15649475) RGD PMID:15649475 MGI:3530675 NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587
JBrowse link
G Coro1c coronin 1C involved_in IBA
ISO
PMID:21873635
(PMID:25074804)
RGD PMID:25074804 PMID:21873635 RGD:13792537 NCBI chr12:42,712,960...42,785,179
Ensembl chr12:42,712,991...42,785,179
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (MGI:1267304|PMID:9624616) RGD PMID:9624616 MGI:1267304 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO (MGI:1349495|PMID:10591209) RGD PMID:10591209 MGI:1349495 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3039290 (MGI:3037600|PMID:15037550)
Ensembl
RGD
PMID:15037550 GO_REF:0000107 MGI:3037600 NCBI chr  X:64,257,351...64,270,158
Ensembl chr  X:64,257,351...64,270,157
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:1352955|PMID:10655590)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:10655590 GO_REF:0000024 GO_REF:0000107 MGI:1352955 NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595
JBrowse link
G Fgf19 fibroblast growth factor 19 acts_upstream_of_or_within ISO MGI:3044957 (MGI:3575218|PMID:15789410) RGD PMID:15789410 MGI:3575218 NCBI chr 1:200,056,656...200,059,944
Ensembl chr 1:200,056,644...200,060,287
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (MGI:3588904|PMID:15996652), (MGI:4358009|PMID:19700621), (MGI:5478665|PMID:23144817) RGD PMID:15996652 PMID:19700621 PMID:23144817 MGI:3588904 MGI:4358009 MGI:5478665 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15242795)
UniProt
Ensembl
RGD
PMID:15242795 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:56,893,992...56,919,935
Ensembl chr 2:56,895,010...56,917,209
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2179429 (MGI:3607736|PMID:14659802)
Ensembl
RGD
PMID:14659802 GO_REF:0000107 MGI:3607736 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:707955|PMID:9165122)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:9165122 GO_REF:0000024 GO_REF:0000107 MGI:707955 NCBI chr 9:86,735,793...86,756,640
Ensembl chr 9:86,742,102...86,755,108
JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within ISO MGI:108075 (MGI:3640718|PMID:16687132) RGD PMID:16687132 MGI:3640718 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (MGI:1934508|PMID:11401406) RGD PMID:11401406 MGI:1934508 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO MGI:1934917 (MGI:3611396|PMID:16316641) RGD PMID:16316641 MGI:3611396 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO MGI:2137037 (MGI:3613099|PMID:16319111) RGD PMID:16319111 MGI:3613099 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Nrtn neurturin acts_upstream_of_or_within ISO (PMID:15242795) RGD PMID:15242795 NCBI chr 9:1,581,860...1,587,835
Ensembl chr 9:1,581,975...1,583,102
JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO MGI:3522498 (MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:3618450 NCBI chr 3:131,677,388...131,707,844
Ensembl chr 3:131,677,391...131,708,359
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:3043030 (MGI:3056222|PMID:15384171) RGD PMID:15384171 MGI:3056222 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042
JBrowse link
G Pax6 paired box 6 IMP RGD PMID:9079035 RGD:8552342 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IBA
ISO
PMID:21873635
(MGI:5302129|PMID:22215812)
RGD PMID:22215812 PMID:21873635 MGI:5302129, RGD:13792537 NCBI chr 5:144,549,350...144,621,259
Ensembl chr 5:144,549,363...144,620,865
JBrowse link
G Radil Rap associating with DIL domain involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:12,024,395...12,088,540
Ensembl chr12:12,024,395...12,088,540
JBrowse link
G Ret ret proto-oncogene acts_upstream_of_or_within ISO MGI:2449909 (MGI:3617928|PMID:15242795) RGD PMID:15242795 MGI:3617928 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
JBrowse link
G Sema3a semaphorin 3A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
JBrowse link
G Sema3b semaphorin 3B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:108,271,663...108,280,326
Ensembl chr 8:108,271,666...108,282,919
JBrowse link
G Sema3c semaphorin 3C involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2150759 (MGI:2149435|PMID:11688556)
RGD PMID:11688556 PMID:21873635 MGI:2149435, RGD:13792537 NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534
JBrowse link
G Sema3d semaphorin 3D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:22,316,769...22,505,930
Ensembl chr 4:22,316,779...22,505,930
JBrowse link
G Sema3e semaphorin 3E involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:20,297,534...20,555,287
Ensembl chr 4:20,299,718...20,555,229
JBrowse link
G Sema3f semaphorin 3F involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2670663 (MGI:3613099|PMID:16319111)
RGD PMID:16319111 PMID:21873635 MGI:3613099, RGD:13792537 NCBI chr 8:108,357,629...108,387,083
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
G Sema3g semaphorin 3G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,413,589...6,425,221
Ensembl chr16:6,413,589...6,425,221
JBrowse link
G Sema4a semaphorin 4A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:173,896,432...173,917,903
Ensembl chr 2:173,896,439...173,914,442
JBrowse link
G Sema4b semaphorin 4B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:134,136,646...134,177,777
Ensembl chr 1:134,149,536...134,177,775
JBrowse link
G Sema4c semaphorin 4C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:38,791,668...38,802,171
Ensembl chr 9:38,791,670...38,802,128
JBrowse link
G Sema4d semaphorin 4D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:13,430,324...13,537,146
Ensembl chr17:13,430,379...13,537,138
JBrowse link
G Sema4f ssemaphorin 4F involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,411,411...115,437,721
Ensembl chr 4:115,411,417...115,437,721
JBrowse link
G Sema4g semaphorin 4G involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:243,849,979...243,865,343
Ensembl chr 1:243,853,854...243,865,341
JBrowse link
G Sema5a semaphorin 5A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:83,309,843...83,741,084
Ensembl chr 2:83,309,843...83,741,084
JBrowse link
G Sema5b semaphorin 5B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:65,102,031...65,225,456
Ensembl chr11:65,102,031...65,225,311
JBrowse link
G Sema6a semaphorin 6A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:40,050,623...40,171,954
Ensembl chr18:40,050,624...40,171,954
JBrowse link
G Sema6b semaphorin 6B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:950,939...967,905
Ensembl chr 9:950,939...961,521
JBrowse link
G Sema6c semaphorin 6C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:182,733,635...182,750,066
Ensembl chr 2:182,737,474...182,746,856
JBrowse link
G Sema6d semaphorin 6D involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,883,415...111,941,100
Ensembl chr 3:111,883,872...111,941,094
JBrowse link
G Sema7a semaphorin 7A (John Milton Hagen blood group) involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,348,448...58,370,536
Ensembl chr 8:58,348,448...58,370,536
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:1857796 (MGI:3583396|PMID:15936751)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15936751 GO_REF:0000024 GO_REF:0000107 MGI:3583396 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101791 (MGI:3640718|PMID:16687132)
Ensembl
RGD
PMID:16687132 GO_REF:0000107 MGI:3640718 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Sox10 SRY-box transcription factor 10 involved_in IBA
ISO
PMID:21873635
(MGI:3527299|PMID:15572147)
RGD PMID:15572147 PMID:21873635 MGI:3527299, RGD:13792537 NCBI chr 7:110,725,274...110,735,544
Ensembl chr 7:110,725,274...110,735,544
JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:3527299|PMID:15572147)
UniProt
RGD
PMID:15572147 GO_REF:0000024 MGI:3527299 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179190|MGI:2179191 (MGI:3530686|PMID:15652707), (MGI:4822099|PMID:20501333)
UniProt
RGD
PMID:15652707 PMID:20501333 GO_REF:0000024 MGI:3530686 MGI:4822099 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387501 (MGI:2450818|PMID:12522767) RGD PMID:12522767 MGI:2450818 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
neural crest cell migration involved in autonomic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fn1 fibronectin 1 involved_in ISO
IEA
(PMID:26571399)
GO_REF:0000107
RGD
Ensembl
PMID:26571399 GO_REF:0000107 NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) RGD PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662) RGD PMID:18356247 PMID:19386662 MGI:3788968 MGI:3848580 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Phox2b paired-like homeobox 2b involved_in ISO (MGI:1337891|PMID:10360575) RGD PMID:10360575 MGI:1337891 NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) RGD PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 8:108,357,629...108,387,083
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
neural crest cell migration involved in heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
JBrowse link
neural crest cell migration involved in sympathetic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema3a semaphorin 3A involved_in ISO (MGI:5567908|PMID:19325129) RGD PMID:19325129 MGI:5567908 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
JBrowse link
positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P23359 (MGI:5502250|PMID:23863481)
Ensembl
RGD
PMID:23863481 GO_REF:0000107 MGI:5502250 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P21275 (MGI:5502250|PMID:23863481) RGD PMID:23863481 MGI:5502250 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Sema3c semaphorin 3C involved_in ISO (MGI:5693177|PMID:26053665) RGD PMID:26053665 MGI:5693177 NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534
JBrowse link
regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eng endoglin NOT|involved_in ISO (MGI:3721185|PMID:17628518) RGD PMID:17628518 MGI:3721185 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 8:108,357,629...108,387,083
Ensembl chr 8:108,357,629...108,387,083
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      cellular developmental process 4543
        cell development 2481
          stem cell development 95
            neural crest cell development + 89
Path 2
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      cellular developmental process 4543
        cell differentiation 4448
          stem cell differentiation 244
            stem cell development 95
              neural crest cell development + 89
paths to the root