ONTOLOGY REPORT - ANNOTATIONS
Term: anatomical structure homeostasis
Accession: GO:0060249
browse the term
Definition: A homeostatic process involved in the maintenance of an internal steady state within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms: exact_synonym: anatomical structure maintenance
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Acp5
acid phosphatase 5, tartrate resistant
acts_upstream_of_or_within involved_in
TAS ISO IBA IEP
MGI:2180086 (MGI:83673|PMID:8898228) PMID:21873635
RGD
PMID:8898228 PMID:1722212 PMID:21873635 PMID:20069278
MGI:83673 , RGD:1298628 , RGD:13792537 , RGD:2315871
NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929
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Adrb2
adrenoceptor beta 2
acts_upstream_of_or_within
ISO
MGI:1859675 (MGI:3575849|PMID:15724149)
RGD
PMID:15724149
MGI:3575849
NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
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Ccdc154
coiled-coil domain containing 154
acts_upstream_of_or_within
ISO
MGI:5702426 (MGI:5697796|PMID:20121924)
RGD
PMID:20121924
MGI:5697796
NCBI chr10:14,177,271...14,187,378
Ensembl chr10:14,177,278...14,187,253
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Ctnnb1
catenin beta 1
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1858008|MGI:2148567|MGI:3041864|MGI:98504 (MGI:3578468|PMID:15866165) GO_REF:0000107
RGD Ensembl
PMID:15866165
GO_REF:0000107 MGI:3578468
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Ctsk
cathepsin K
acts_upstream_of_or_within
IMP ISO
MGI:2182131 (MGI:4397742|PMID:19834056)
RGD
PMID:19834056 PMID:10430032
MGI:4397742 , RGD:1601030
NCBI chr 2:183,058,586...183,069,551
Ensembl chr 2:183,058,569...183,069,550
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Ctss
cathepsin S
IMP
RGD
PMID:10470376
RGD:5687153
NCBI chr 2:183,089,192...183,114,483
Ensembl chr 2:183,086,437...183,114,483
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO
MGI:1857079 (MGI:6282476|PMID:28798354)
RGD
PMID:28798354
MGI:6282476
NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
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Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within
ISO
(MGI:6478096|PMID:29415886)
RGD
PMID:29415886
MGI:6478096
NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
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Gpr55
G protein-coupled receptor 55
involved_in
ISO
(PMID:19805329)
RGD
PMID:19805329
NCBI chr 9:86,584,906...86,640,601
Ensembl chr 9:86,590,885...86,640,613
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Hnf1a
HNF1 homeobox A
acts_upstream_of_or_within
ISO
MGI:88276 (MGI:3578468|PMID:15866165)
RGD
PMID:15866165
MGI:3578468
NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
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Iapp
islet amyloid polypeptide
acts_upstream_of
ISO
MGI:2656235 (MGI:3037515|PMID:14970190)
RGD
PMID:14970190
MGI:3037515
NCBI chr 4:175,237,013...175,244,373
Ensembl chr 4:175,237,115...175,242,920
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Ihh
Indian hedgehog signaling molecule
acts_upstream_of_or_within
ISO
(MGI:1335697|PMID:10208865)
RGD
PMID:10208865
MGI:1335697
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
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Il7
interleukin 7
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 (MGI:2448204|PMID:12490655) GO_REF:0000107
UniProt RGD Ensembl
PMID:12490655
GO_REF:0000024 GO_REF:0000107 MGI:2448204
NCBI chr 2:94,235,219...94,280,075
Ensembl chr 2:94,234,766...94,280,075
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Lrrk1
leucine-rich repeat kinase 1
acts_upstream_of_or_within
ISO
MGI:5568128 (MGI:5564766|PMID:23526378)
RGD
PMID:23526378
MGI:5564766
NCBI chr 1:119,844,360...119,972,885
Ensembl chr 1:119,845,146...119,979,734
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Mir34a
microRNA 34a
acts_upstream_of_or_within_negative_effect
ISO
(MGI:5613071|PMID:25043055)
RGD
PMID:25043055
MGI:5613071
NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103
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Ncdn
neurochondrin
acts_upstream_of_or_within
ISO
(MGI:1336772|PMID:10231559)
RGD
PMID:10231559
MGI:1336772
NCBI chr 5:139,037,807...139,047,645
Ensembl chr 5:139,037,819...139,047,568
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Nox4
NADPH oxidase 4
acts_upstream_of_or_within
ISO
(MGI:1930898|PMID:11098048)
RGD
PMID:11098048
MGI:1930898
NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
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Pth
parathyroid hormone
TAS
RGD
PMID:11145578
RGD:61525
NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
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Pth1r
parathyroid hormone 1 receptor
acts_upstream_of_or_within
ISO
MGI:2154519 (MGI:3624906|PMID:9832460)
RGD
PMID:9832460
MGI:3624906
NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729
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Ptk2b
protein tyrosine kinase 2 beta
involved_in
ISS ISO
GO_REF:0000024 (MGI:3040548|PMID:14739300)
UniProt RGD
PMID:14739300
GO_REF:0000024 MGI:3040548
NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
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Rab3d
RAB3D, member RAS oncogene family
involved_in
ISO
(PMID:21262767)
RGD
PMID:21262767
NCBI chr 8:20,438,622...20,449,269
Ensembl chr 8:20,439,294...20,449,185
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Rab7a
RAB7A, member RAS oncogene family
IMP
RGD
PMID:11514537
RGD:729760
NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
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Rac1
Rac family small GTPase 1
IDA
RGD
PMID:10350213
RGD:1599401
NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
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Rac2
Rac family small GTPase 2
IDA
RGD
PMID:10350213
RGD:1599401
NCBI chr 7:110,101,344...110,128,718
Ensembl chr 7:110,116,260...110,128,720
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Snx10
sorting nexin 10
acts_upstream_of_or_within
ISO
MGI:5690193 (MGI:5688814|PMID:25811986)
RGD
PMID:25811986
MGI:5688814
NCBI chr 4:80,612,648...80,677,005
Ensembl chr 4:80,612,669...80,676,996
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Src
SRC proto-oncogene, non-receptor tyrosine kinase
involved_in acts_upstream_of_or_within
ISS ISO IBA
GO_REF:0000024 (MGI:3040548|PMID:14739300) MGI:1857247 (MGI:4353464|PMID:19448635) PMID:21873635
UniProt RGD
PMID:14739300 PMID:19448635 PMID:21873635
GO_REF:0000024 MGI:3040548 MGI:4353464 , RGD:13792537
NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
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Tcirg1
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3
acts_upstream_of_or_within
ISO
MGI:1856973|MGI:5496553 (MGI:3829104|PMID:18768394), (MGI:5308498|PMID:22087326), (MGI:5470331|PMID:23166162), (MGI:5488585|PMID:21305608), (MGI:6296816|PMID:23908015)
RGD
PMID:18768394 PMID:21305608 PMID:22087326 PMID:23166162 PMID:23908015
MGI:3829104 MGI:5308498 MGI:5470331 MGI:5488585 MGI:6296816
NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
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Tnfsf11
TNF superfamily member 11
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:2448204|PMID:12490655) GO_REF:0000107
RGD Ensembl
PMID:12490655
GO_REF:0000107 MGI:2448204
NCBI chr15:53,674,990...53,705,171
Ensembl chr15:53,673,877...53,705,445
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Tns3
tensin 3
acts_upstream_of_or_within
ISO
(MGI:5923408|PMID:27505886)
RGD
PMID:27505886
MGI:5923408
NCBI chr14:83,173,649...83,405,671
Ensembl chr14:83,173,649...83,405,998
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Tpp1
tripeptidyl peptidase 1
involved_in
ISS ISO
PMID:14609438 (PMID:8215436)
RGD
PMID:8215436 PMID:14609438
RGD:8554137
NCBI chr 1:160,097,984...160,104,108
Ensembl chr 1:160,096,833...160,104,129
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Traf6
TNF receptor associated factor 6
involved_in
ISO
(MGI:1335941|PMID:10215628)
RGD
PMID:10215628
MGI:1335941
NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507
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Comp
cartilage oligomeric matrix protein
involved_in
ISO IEA ISS
(PMID:32747625) (MGI:6828896|PMID:32747625) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:32747625
GO_REF:0000024 GO_REF:0000107 MGI:6828896
NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
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Cytl1
cytokine like 1
acts_upstream_of_or_within
ISO
MGI:5291960 (MGI:5285461|PMID:21652695)
RGD
PMID:21652695
MGI:5285461
NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886
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Idua
alpha-L-iduronidase
acts_upstream_of_or_within
ISO
MGI:2176236 (MGI:4397742|PMID:19834056)
RGD
PMID:19834056
MGI:4397742
NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
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Mtf1
metal-regulatory transcription factor 1
acts_upstream_of
ISO
(MGI:5577232|PMID:24529376)
RGD
PMID:24529376
MGI:5577232
NCBI chr 5:137,062,319...137,107,136
Ensembl chr 5:137,062,376...137,107,136
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Slc39a8
solute carrier family 39 member 8
acts_upstream_of
ISS ISO
GO_REF:0000024 (MGI:5577232|PMID:24529376)
UniProt RGD
PMID:24529376
GO_REF:0000024 MGI:5577232
NCBI chr 2:224,171,787...224,319,326
Ensembl chr 2:224,256,654...224,319,129
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Trpv4
transient receptor potential cation channel, subfamily V, member 4
involved_in
ISO
(PMID:24474754)
RGD
PMID:24474754
NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517
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Cracd
capping protein inhibiting regulator of actin dynamics
involved_in
ISO
(MGI:6271776|PMID:30361697)
RGD
PMID:30361697
MGI:6271776
NCBI chr14:31,284,066...31,520,103
Ensembl chr14:31,284,184...31,522,431
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Crocc
ciliary rootlet coiled-coil, rootletin
acts_upstream_of_or_within
ISO
MGI:3580447 (MGI:3580205|PMID:15870283)
RGD
PMID:15870283
MGI:3580205
NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578
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Cxadr
CXADR, Ig-like cell adhesion molecule
involved_in
ISO ISS
(PMID:15304526) GO_REF:0000024
RGD UniProt
PMID:15304526
GO_REF:0000024
NCBI chr11:16,982,752...17,030,078
Ensembl chr11:16,982,860...17,030,046
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Ildr1
immunoglobulin-like domain containing receptor 1
involved_in
ISO
(MGI:5507911|PMID:23239027)
RGD
PMID:23239027
MGI:5507911
NCBI chr11:64,085,774...64,118,760
Ensembl chr11:64,008,566...64,118,760
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Ldb1
LIM domain binding 1
acts_upstream_of_or_within
ISO
MGI:894670 (MGI:3768693|PMID:17991461)
RGD
PMID:17991461
MGI:3768693
NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
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Ldb2
LIM domain binding 2
acts_upstream_of_or_within
ISO
MGI:894762 (MGI:3768693|PMID:17991461)
RGD
PMID:17991461
MGI:3768693
NCBI chr14:66,277,044...66,598,071
Ensembl chr14:66,277,085...66,597,778
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Lsr
lipolysis stimulated lipoprotein receptor
involved_in
ISS ISO
GO_REF:0000024 (MGI:5507911|PMID:23239027)
UniProt RGD
PMID:23239027
GO_REF:0000024 MGI:5507911
NCBI chr 1:86,185,769...86,201,952
Ensembl chr 1:86,186,431...86,201,952
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Mks1
MKS transition zone complex subunit 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4410614|MGI:4433029|MGI:4887578 (MGI:4367169|PMID:19776033), (MGI:4868517|PMID:21045211), (MGI:5487695|PMID:23454480)
Ensembl RGD
PMID:19776033 PMID:21045211 PMID:23454480
GO_REF:0000107 MGI:4367169 MGI:4868517 MGI:5487695
NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
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Piwil4
piwi-like RNA-mediated gene silencing 4
involved_in
ISO ISS IEA
(PMID:28025795) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:28025795
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761
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Srf
serum response factor
acts_upstream_of_or_within
ISO
MGI:2445832|MGI:3522206 (MGI:4421610|PMID:20047077)
RGD
PMID:20047077
MGI:4421610
NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
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Add1
adducin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3799499 (MGI:3806792|PMID:18723693)
Ensembl RGD
PMID:18723693
GO_REF:0000107 MGI:3806792
NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182
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Akt3
AKT serine/threonine kinase 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3574346 (MGI:3531618|PMID:15713641)
Ensembl RGD
PMID:15713641
GO_REF:0000107 MGI:3531618
NCBI chr13:88,943,708...89,225,831
Ensembl chr13:88,946,091...89,225,708
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Bax
BCL2 associated X, apoptosis regulator
acts_upstream_of_or_within
ISO
MGI:1857249|MGI:1857429 (MGI:3054131|PMID:15342910), (MGI:3653046|PMID:11413548)
RGD
PMID:11413548 PMID:15342910
MGI:3054131 MGI:3653046
NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
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Bcl2
BCL2, apoptosis regulator
acts_upstream_of_or_within
ISO
MGI:1857134|MGI:2158305 (MGI:3618415|PMID:16427619), (MGI:894988|PMID:9241272)
RGD
PMID:9241272 PMID:16427619
MGI:3618415 MGI:894988
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Ccr2
C-C motif chemokine receptor 2
acts_upstream_of_or_within
ISO
MGI:2158345 (MGI:1100445|PMID:9342361)
RGD
PMID:9342361
MGI:1100445
NCBI chr 8:123,734,465...123,742,483
Ensembl chr 8:123,734,430...123,742,100
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Cd7
Cd7 molecule
acts_upstream_of_or_within
ISO
MGI:2180804 (MGI:1274973|PMID:9637484)
RGD
PMID:9637484
MGI:1274973
NCBI chr10:106,304,046...106,306,963
Ensembl chr10:106,304,056...106,306,967
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Col14a1
collagen type XIV alpha 1 chain
acts_upstream_of_or_within
ISO
MGI:3846440 (MGI:5444801|PMID:22906538)
RGD
PMID:22906538
MGI:5444801
NCBI chr 7:86,722,093...86,937,215
Ensembl chr 7:86,722,094...86,937,214
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Coro1a
coronin 1A
acts_upstream_of_or_within
ISO
MGI:3818509 (MGI:3818245|PMID:18836449)
RGD
PMID:18836449
MGI:3818245
NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
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Csf1
colony stimulating factor 1
acts_upstream_of_or_within
ISO
MGI:1856333 (MGI:893319|PMID:9215625)
RGD
PMID:9215625
MGI:893319
NCBI chr 2:195,377,215...195,396,608
Ensembl chr 2:195,377,215...195,411,704
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F2r
coagulation factor II (thrombin) receptor
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 MGI:3038377 (MGI:3784647|PMID:18305483) GO_REF:0000107
UniProt RGD Ensembl
PMID:18305483
GO_REF:0000024 GO_REF:0000107 MGI:3784647
NCBI chr 2:26,869,343...26,885,856
Ensembl chr 2:26,868,404...26,885,870
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Fh
fumarate hydratase
acts_upstream_of_or_within
ISO
MGI:2665300|MGI:3710112 (MGI:3708434|PMID:17418408)
RGD
PMID:17418408
MGI:3708434
NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
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Flt3
Fms related receptor tyrosine kinase 3
acts_upstream_of_or_within
ISO
MGI:3628823|MGI:96995 (MGI:4452060|PMID:20457904), (MGI:5444341|PMID:22674806)
RGD
PMID:20457904 PMID:22674806
MGI:4452060 MGI:5444341
NCBI chr12:7,623,658...7,699,474
Ensembl chr12:7,623,930...7,699,474
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Flt3lg
Fms related receptor tyrosine kinase 3 ligand
acts_upstream_of_or_within
ISO
MGI:97799 (MGI:4849322|PMID:21048959)
RGD
PMID:21048959
MGI:4849322
NCBI chr 1:95,615,056...95,620,463
Ensembl chr 1:95,609,370...95,620,463
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Gata1
GATA binding protein 1
acts_upstream_of_or_within
ISO
MGI:95662 (MGI:3027433|PMID:14504093)
RGD
PMID:14504093
MGI:3027433
NCBI chr X:14,529,706...14,537,530
Ensembl chr X:14,529,702...14,537,530
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Gata2
GATA binding protein 2
acts_upstream_of_or_within
ISO
MGI:1857743|MGI:95661 (MGI:3027433|PMID:14504093), (MGI:3621261|PMID:15811962)
RGD
PMID:14504093 PMID:15811962
MGI:3027433 MGI:3621261
NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
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Gigyf2
GRB10 interacting GYF protein 2
acts_upstream_of_or_within
ISO
MGI:4126459 (MGI:4366664|PMID:19744960)
RGD
PMID:19744960
MGI:4366664
NCBI chr 9:88,001,212...88,127,040
Ensembl chr 9:88,001,301...88,125,715
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Il20rb
interleukin 20 receptor subunit beta
acts_upstream_of_or_within
ISO
MGI:3830304 (MGI:3827040|PMID:19124723)
RGD
PMID:19124723
MGI:3827040
NCBI chr 8:100,979,085...101,010,829
Ensembl chr 8:100,980,383...101,009,942
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Il7
interleukin 7
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1857652 (MGI:894974|PMID:9252127) GO_REF:0000107
RGD Ensembl
PMID:9252127
GO_REF:0000107 MGI:894974
NCBI chr 2:94,235,219...94,280,075
Ensembl chr 2:94,234,766...94,280,075
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Ildr2
immunoglobulin-like domain containing receptor 2
acts_upstream_of_or_within
ISO
MGI:3820395 (MGI:3804573|PMID:18654634)
RGD
PMID:18654634
MGI:3804573
NCBI chr13:78,518,770...78,580,627
Ensembl chr13:78,518,802...78,576,924
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Klhl10
kelch-like family member 10
acts_upstream_of_or_within
ISO
MGI:3040869 (MGI:3040865|PMID:15136734)
RGD
PMID:15136734
MGI:3040865
NCBI chr10:85,376,442...85,392,720
Ensembl chr10:85,376,442...85,392,720
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Kmt2a
lysine methyltransferase 2A
acts_upstream_of_or_within
ISO
MGI:95559 (MGI:5444341|PMID:22674806)
RGD
PMID:22674806
MGI:5444341
NCBI chr 8:45,116,771...45,193,320
Ensembl chr 8:45,118,814...45,193,181
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Kras
KRAS proto-oncogene, GTPase
acts_upstream_of_or_within
ISO
MGI:99511 (MGI:5588640|PMID:24675817)
RGD
PMID:24675817
MGI:5588640
NCBI chr 4:178,185,418...178,218,484
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Lipa
lipase A, lysosomal acid type
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2451080 (MGI:3603471|PMID:14644759)
Ensembl RGD
PMID:14644759
GO_REF:0000107 MGI:3603471
NCBI chr 1:232,024,351...232,167,329
Ensembl chr 1:232,024,356...232,057,633
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Nfix
nuclear factor I X
involved_in
ISO
MGI:3802570|MGI:3802571 (MGI:5796911|PMID:25331604), (MGI:5812812|PMID:27965439)
RGD
PMID:25331604 PMID:27965439
MGI:5796911 MGI:5812812
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
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Nfkbiz
NFKB inhibitor zeta
involved_in
ISO
MGI:5501251 (MGI:5906114|PMID:26019294)
RGD
PMID:26019294
MGI:5906114
NCBI chr11:44,782,676...44,810,723
Ensembl chr11:44,782,676...44,810,723
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Nos3
nitric oxide synthase 3
involved_in
IEA ISO
GO_REF:0000107 UniProtKB:Q01705 (MGI:6158784|PMID:27107132)
Ensembl RGD
PMID:27107132
GO_REF:0000107 MGI:6158784
NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
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Notch1
notch receptor 1
involved_in
ISO
UniProtKB:P70313 (MGI:6158784|PMID:27107132)
RGD
PMID:27107132
MGI:6158784
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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P2rx7
purinergic receptor P2X 7
acts_upstream_of_or_within
ISO
MGI:2386080 (MGI:3796378|PMID:16969386)
RGD
PMID:16969386
MGI:3796378
NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
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Prdm14
PR/SET domain 14
acts_upstream_of_or_within
ISO
MGI:3805889 (MGI:3805418|PMID:18622394)
RGD
PMID:18622394
MGI:3805418
NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
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Pth
parathyroid hormone
acts_upstream_of_or_within
ISO
MGI:95560 (MGI:4849322|PMID:21048959)
RGD
PMID:21048959
MGI:4849322
NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
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Ptpn11
protein tyrosine phosphatase, non-receptor type 11
acts_upstream_of_or_within
ISO
MGI:3690333|MGI:96680 (MGI:5588640|PMID:24675817)
RGD
PMID:24675817
MGI:5588640
NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925
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Rac1
Rac family small GTPase 1
acts_upstream_of_or_within
ISO
MGI:2180784 (MGI:5569596|PMID:23258346)
RGD
PMID:23258346
MGI:5569596
NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
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Rac3
Rac family small GTPase 3
acts_upstream_of_or_within
ISO
MGI:97845 (MGI:5569596|PMID:23258346)
RGD
PMID:23258346
MGI:5569596
NCBI chr10:106,002,808...106,005,244
Ensembl chr10:105,993,087...106,005,260
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Rpa1
replication protein A1
acts_upstream_of_or_within
ISO
MGI:3582609 (MGI:3581950|PMID:15965476)
RGD
PMID:15965476
MGI:3581950
NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
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Sash3
SAM and SH3 domain containing 3
acts_upstream_of_or_within
ISO
MGI:3716944 (MGI:3607020|PMID:16227612)
RGD
PMID:16227612
MGI:3607020
NCBI chr X:127,326,815...127,341,521
Ensembl chr X:127,326,859...127,341,519
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Smo
smoothened, frizzled class receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:5510940|PMID:23680462)
Ensembl RGD
PMID:23680462
GO_REF:0000107 MGI:5510940
NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
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Sox9
SRY-box transcription factor 9
acts_upstream_of_or_within
ISO
MGI:2429649 (MGI:5524169|PMID:24218621)
RGD
PMID:24218621
MGI:5524169
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
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Tex15
testis expressed 15, meiosis and synapsis associated
acts_upstream_of_or_within
ISO
MGI:3526165 (MGI:3794139|PMID:18283110)
RGD
PMID:18283110
MGI:3794139
NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467
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Tuba1a
tubulin, alpha 1A
involved_in
ISO
MGI:3617352 (MGI:5316577|PMID:21875651)
RGD
PMID:21875651
MGI:5316577
NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186
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Vegfa
vascular endothelial growth factor A
acts_upstream_of_or_within
ISO
MGI:1931048 (MGI:5461755|PMID:22886301)
RGD
PMID:22886301
MGI:5461755
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
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Vps54
VPS54 subunit of GARP complex
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857091 (MGI:5568834|PMID:24349357) MGI:1857091 (MGI:82936|PMID:8815872)
Ensembl RGD
PMID:8815872 PMID:24349357
GO_REF:0000107 MGI:5568834 MGI:82936
NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857
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Vhl
von Hippel-Lindau tumor suppressor
acts_upstream_of_or_within
ISO
MGI:2136645 (MGI:5429122|PMID:22627278)
RGD
PMID:22627278
MGI:5429122
NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
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Abcc6
ATP binding cassette subfamily C member 6
involved_in
ISO
MGI:1351634|MGI:3045236|MGI:3785162|MGI:97370 (MGI:5575834|PMID:24732453), (MGI:6094548|PMID:28652107)
RGD
PMID:24732453 PMID:28652107
MGI:5575834 MGI:6094548
NCBI chr 1:96,447,224...96,501,464
Ensembl chr 1:96,447,251...96,501,464
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Alpl
alkaline phosphatase, biomineralization associated
involved_in
ISO
MGI:1856651|MGI:2385534 (MGI:5050347|PMID:21490328)
RGD
PMID:21490328
MGI:5050347
NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
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Ankh
ANKH inorganic pyrophosphate transport regulator
involved_in
ISO
MGI:1856651|MGI:2385534 (MGI:3630246|PMID:15625282), (MGI:5050347|PMID:21490328)
RGD
PMID:15625282 PMID:21490328
MGI:3630246 MGI:5050347
NCBI chr 2:78,153,027...78,280,181
Ensembl chr 2:78,153,026...78,280,187
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
involved_in
ISO
MGI:1351634|MGI:1856651|MGI:2385534|MGI:3045236|MGI:3785162|MGI:97370 (MGI:3630246|PMID:15625282), (MGI:5050347|PMID:21490328), (MGI:5515276|PMID:23798568), (MGI:5575834|PMID:24732453), (MGI:5704242|PMID:26624227), (MGI:5754884|PMID:26763447), (MGI:6094548|PMID:28652107), (MGI:6100817|PMID:27959908), (MGI:6103493|PMID:28402956), (MGI:6104928|PMID:25644539)
RGD
PMID:15625282 PMID:21490328 PMID:23798568 PMID:24732453 PMID:25644539 PMID:26624227 PMID:26763447 PMID:27959908 PMID:28402956 PMID:28652107 More...
MGI:3630246 MGI:5050347 MGI:5515276 MGI:5575834 MGI:5704242 MGI:5754884 MGI:6094548 MGI:6100817 MGI:6103493 MGI:6104928
NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
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Nt5e
5' nucleotidase, ecto
involved_in
ISO IEA
(MGI:6104928|PMID:25644539) GO_REF:0000107
RGD Ensembl
PMID:25644539
GO_REF:0000107 MGI:6104928
NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
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Il10ra
interleukin 10 receptor subunit alpha
involved_in
ISO
(PMID:29454749)
RGD
PMID:29454749
NCBI chr 8:45,563,009...45,578,041
Ensembl chr 8:45,563,137...45,578,061
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Il17a
interleukin 17A
involved_in
IEA ISO
GO_REF:0000107 (MGI:5788042|PMID:26431948)
Ensembl RGD
PMID:26431948
GO_REF:0000107 MGI:5788042
NCBI chr 9:23,144,402...23,147,889
Ensembl chr 9:23,144,402...23,147,889
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Inava
innate immunity activator
involved_in
ISO
(MGI:6119883|PMID:29420262)
RGD
PMID:29420262
MGI:6119883
NCBI chr13:47,666,446...47,687,383
Ensembl chr13:47,666,447...47,686,729
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Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2429649 (MGI:3766658|PMID:17681175)
UniProt RGD
PMID:17681175
GO_REF:0000024 MGI:3766658
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
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Tlr4
toll-like receptor 4
involved_in
IEA ISO
GO_REF:0000107 (MGI:4421230|PMID:20051628)
Ensembl RGD
PMID:20051628
GO_REF:0000107 MGI:4421230
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Zfp830
zinc finger protein 830
acts_upstream_of_or_within
ISO
MGI:4950703 (MGI:5428139|PMID:23213458)
RGD
PMID:23213458
MGI:5428139
NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523
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Abcb1a
ATP binding cassette subfamily B member 1A
IMP
RGD
PMID:26830080
RGD:11041002
NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709
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Bdkrb2
bradykinin receptor B2
IDA
RGD
PMID:20080302
RGD:4891047
NCBI chr 6:124,472,317...124,502,497
Ensembl chr 6:124,472,566...124,502,497
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Cdc45
cell division cycle 45
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
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Cldn5
claudin 5
involved_in
ISO
(PMID:28961379)
RGD
PMID:28961379
NCBI chr11:82,212,822...82,214,248
Ensembl chr11:82,211,475...82,214,992
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Mbp
myelin basic protein
involved_in
ISO
(PMID:22524708)
RGD
PMID:22524708
NCBI chr18:75,855,878...75,966,404
Ensembl chr18:75,855,878...75,966,404
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Mfsd2a
MFSD2 lysolipid transporter A, lysophospholipid
acts_upstream_of_or_within
ISO
(MGI:6196220|PMID:30074985)
RGD
PMID:30074985
MGI:6196220
NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
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Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (MGI:4950812|PMID:21408219)
RGD
PMID:21408219
MGI:4950812
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
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Ptgs1
prostaglandin-endoperoxide synthase 1
IMP
RGD
PMID:17704356
RGD:2325928
NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
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Ptgs2
prostaglandin-endoperoxide synthase 2
IMP
RGD
PMID:17704356
RGD:2325928
NCBI chr13:62,164,080...62,169,770
Ensembl chr13:62,163,932...62,172,188
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Slc12a2
solute carrier family 12 member 2
acts_upstream_of_or_within
ISO
(MGI:6392927|PMID:28577991)
RGD
PMID:28577991
MGI:6392927
NCBI chr18:51,348,282...51,416,448
Ensembl chr18:51,348,302...51,416,440
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Slc1a1
solute carrier family 1 member 1
acts_upstream_of_or_within
ISO
(MGI:6393184|PMID:25350110)
RGD
PMID:25350110
MGI:6393184
NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
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Tspan12
tetraspanin 12
acts_upstream_of_or_within
ISO
MGI:6105927 (MGI:6268227|PMID:30478038)
RGD
PMID:30478038
MGI:6268227
NCBI chr 4:50,313,768...50,389,246
Ensembl chr 4:50,313,772...50,389,246
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Wnk3
WNK lysine deficient protein kinase 3
acts_upstream_of_or_within
ISO
(MGI:6221361|PMID:27782176)
RGD
PMID:27782176
MGI:6221361
NCBI chr X:20,156,260...20,299,252
Ensembl chr X:20,157,041...20,296,821
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Cracd
capping protein inhibiting regulator of actin dynamics
involved_in
IBA ISO
PMID:21873635 (MGI:6271776|PMID:30361697)
RGD
PMID:30361697 PMID:21873635
MGI:6271776 , RGD:13792537
NCBI chr14:31,284,066...31,520,103
Ensembl chr14:31,284,184...31,522,431
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Htr4
5-hydroxytryptamine receptor 4
involved_in
ISO IEA
(MGI:6705927|PMID:33299969) GO_REF:0000107
RGD Ensembl
PMID:33299969
GO_REF:0000107 MGI:6705927
NCBI chr18:55,765,981...55,949,921
Ensembl chr18:55,766,725...55,949,321
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Muc13
mucin 13, cell surface associated
involved_in
ISO
(PMID:17058067)
RGD
PMID:17058067
NCBI chr11:66,957,208...66,980,264
Ensembl chr11:66,960,595...66,984,727
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Muc2
mucin 2, oligomeric mucus/gel-forming
involved_in
ISO ISS
(PMID:17058067) (MGI:6471838|PMID:33093110), (MGI:7287214|PMID:35337837) GO_REF:0000024
RGD UniProt
PMID:17058067 PMID:33093110 PMID:35337837
GO_REF:0000024 MGI:6471838 MGI:7287214
NCBI chr 1:196,796,257...196,831,740
Ensembl chr 1:196,799,517...196,831,756
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Muc4
mucin 4, cell surface associated
involved_in
ISO
(PMID:17058067)
RGD
PMID:17058067
NCBI chr11:68,008,245...68,053,229
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Nod2
nucleotide-binding oligomerization domain containing 2
involved_in
ISO
(PMID:17058067)
RGD
PMID:17058067
NCBI chr19:18,379,720...18,422,817
Ensembl chr19:18,382,439...18,417,177
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Pbld1
phenazine biosynthesis-like protein domain containing 1
involved_in
ISO
(PMID:17929853)
RGD
PMID:17929853
NCBI chr20:25,551,274...25,566,543
Ensembl chr20:25,551,275...25,565,614
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Rbp4
retinol binding protein 4
involved_in
ISO
(PMID:10944490)
RGD
PMID:10944490
NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
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Strap
serine/threonine kinase receptor associated protein
involved_in
ISO
(PMID:17929853)
RGD
PMID:17929853
NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
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Tff1
trefoil factor 1
involved_in
IEP IBA
PMID:21873635
RGD GO_Central
PMID:8836141 PMID:21873635
RGD:625375 , RGD:13792537
NCBI chr20:9,235,736...9,239,597
Ensembl chr20:9,235,736...9,239,597
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Tff2
trefoil factor 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:9,215,750...9,219,619
Ensembl chr20:9,215,761...9,219,619
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Tff3
trefoil factor 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr20:9,193,259...9,197,969
Ensembl chr20:9,193,262...9,198,054
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Tlr9
toll-like receptor 9
involved_in
ISO
(MGI:4399015|PMID:17128265)
RGD
PMID:17128265
MGI:4399015
NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
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Vsig1
V-set and immunoglobulin domain containing 1
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000002 PMID:21873635 MGI:5297726 (MGI:5297312|PMID:21991385)
InterPro RGD
PMID:21991385 PMID:21873635
GO_REF:0000002 MGI:5297312 , RGD:13792537
NCBI chr X:104,607,031...104,640,128
Ensembl chr X:104,607,031...104,639,249
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Aldh1a1
aldehyde dehydrogenase 1 family, member A1
involved_in
IMP
PMID:15623782
UniProt
PMID:15623782
RGD:2306321
NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
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Apbb2
amyloid beta precursor protein binding family B member 2
involved_in
ISO
(MGI:5648704|PMID:25757569)
RGD
PMID:25757569
MGI:5648704
NCBI chr14:41,557,918...41,878,622
Ensembl chr14:41,557,972...41,877,495
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Chmp4b
charged multivesicular body protein 4B
involved_in
ISO
(PMID:17701905)
RGD
PMID:17701905
NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844
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Foxc1
forkhead box C1
involved_in
ISO
(MGI:5314489|PMID:22171010)
RGD
PMID:22171010
MGI:5314489
NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
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Gcnt2
glucosaminyl (N-acetyl) transferase 2
involved_in
ISO
(PMID:12424189)
RGD
PMID:12424189
NCBI chr17:23,796,859...23,901,625 NCBI chr17:23,866,602...23,868,691
Ensembl chr17:23,796,859...23,901,611
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Muc5ac
mucin 5AC, oligomeric mucus/gel-forming
acts_upstream_of_or_within
ISO
MGI:5295259 (MGI:5484972|PMID:23272068)
RGD
PMID:23272068
MGI:5484972
NCBI chr 1:196,864,375...196,896,475
Ensembl chr 1:196,864,336...196,896,475
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Stk39
serine threonine kinase 39
involved_in
ISO
(MGI:5766617|PMID:25515571)
RGD
PMID:25515571
MGI:5766617
NCBI chr 3:52,913,583...53,179,060
Ensembl chr 3:52,913,585...53,179,060
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Vps13b
vacuolar protein sorting 13 homolog B
involved_in
ISO
(MGI:6455609|PMID:32915983)
RGD
PMID:32915983
MGI:6455609
NCBI chr 7:66,557,862...67,128,429
Ensembl chr 7:66,558,471...67,128,429
G
Abcc8
ATP binding cassette subfamily C member 8
IMP
RGD
PMID:18854840
RGD:2325137
NCBI chr 1:96,598,663...96,679,495
Ensembl chr 1:96,598,647...96,679,510
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Sh3gl2
SH3 domain containing GRB2 like 2, endophilin A1
involved_in
ISO
(PMID:24854121)
RGD
PMID:24854121
NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843
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Vegfa
vascular endothelial growth factor A
involved_in
ISO IEA
(PMID:19148554) GO_REF:0000107
RGD Ensembl
PMID:19148554
GO_REF:0000107
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
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Calca
calcitonin-related polypeptide alpha
involved_in
ISO
(PMID:10822112), (PMID:17241109)
RGD
PMID:10822112 PMID:17241109
NCBI chr 1:168,878,212...168,883,176
Ensembl chr 1:168,878,214...168,883,105
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Cartpt
CART prepropeptide
involved_in
ISO
(PMID:16614075) UniProtKB:P56450 (MGI:3696590|PMID:16614075)
RGD
PMID:16614075
MGI:3696590
NCBI chr 2:31,255,098...31,257,452
Ensembl chr 2:31,255,098...31,290,713
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Cd38
CD38 molecule
IDA
RGD
PMID:10477767
RGD:2307268
NCBI chr14:67,172,062...67,212,328
Ensembl chr14:67,172,063...67,211,986
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Ceacam1
CEA cell adhesion molecule 1
acts_upstream_of_or_within
ISO
MGI:5560663 (MGI:5691608|PMID:25490771)
RGD
PMID:25490771
MGI:5691608
NCBI chr 1:81,043,595...81,060,050
Ensembl chr 1:81,043,595...81,059,992
G
Cldn18
claudin 18
acts_upstream_of_or_within
ISO
MGI:5007067 (MGI:5489769|PMID:22437732)
RGD
PMID:22437732
MGI:5489769
NCBI chr 8:100,246,499...100,265,797
Ensembl chr 8:100,247,633...100,273,351
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Csk
C-terminal Src kinase
IDA
RGD
PMID:10411542
RGD:5134371
NCBI chr 8:58,029,748...58,048,742
Ensembl chr 8:58,029,749...58,048,292
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Cyp19a1
cytochrome P450, family 19, subfamily a, polypeptide 1
IMP
RGD
PMID:8694895
RGD:7257714
NCBI chr 8:54,553,165...54,580,758
Ensembl chr 8:54,553,165...54,580,758
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Fshr
follicle stimulating hormone receptor
acts_upstream_of_or_within
ISO
MGI:2384087 (MGI:1926755|PMID:11089565), (MGI:3769858|PMID:17332067)
RGD
PMID:11089565 PMID:17332067
MGI:1926755 MGI:3769858
NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785
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Gpr137
G protein-coupled receptor 137
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:204,129,636...204,132,622
Ensembl chr 1:204,129,636...204,133,082
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Gpr137b
G protein-coupled receptor 137B
involved_in
IBA ISO
PMID:21873635 (MGI:6362357|PMID:31173907)
RGD
PMID:31173907 PMID:21873635
MGI:6362357 , RGD:13792537
NCBI chr17:86,003,630...86,041,841
Ensembl chr17:85,966,921...86,041,835
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Hamp
hepcidin antimicrobial peptide
acts_upstream_of_or_within
ISO
MGI:4351741 (MGI:5581387|PMID:24561287)
RGD
PMID:24561287
MGI:5581387
NCBI chr 1:86,170,926...86,172,865
Ensembl chr 1:86,170,901...86,172,891
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Iapp
islet amyloid polypeptide
acts_upstream_of_or_within
ISO
MGI:2656235 (MGI:3037515|PMID:14970190)
RGD
PMID:14970190
MGI:3037515
NCBI chr 4:175,237,013...175,244,373
Ensembl chr 4:175,237,115...175,242,920
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Il6
interleukin 6
involved_in
ISO
(MGI:5795829|PMID:11159963)
RGD
PMID:11159963
MGI:5795829
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
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Inpp5d
inositol polyphosphate-5-phosphatase D
involved_in acts_upstream_of_or_within
IEA IBA ISO
GO_REF:0000107 PMID:21873635 MGI:2386884 (MGI:2386137|PMID:12161749)
Ensembl RGD
PMID:12161749 PMID:21873635
GO_REF:0000107 MGI:2386137 , RGD:13792537
NCBI chr 9:88,287,680...88,392,748
Ensembl chr 9:88,287,677...88,392,746
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P2rx7
purinergic receptor P2X 7
acts_upstream_of_or_within
ISO
MGI:2386080 (MGI:2667237|PMID:12677010)
RGD
PMID:12677010
MGI:2667237
NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
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Tmem119
transmembrane protein 119
involved_in
ISO
(MGI:5543589|PMID:22416756)
RGD
PMID:22416756
MGI:5543589
NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
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Tnfrsf11b
TNF receptor superfamily member 11B
IMP IDA
RGD
PMID:11839361 PMID:16912914
RGD:730196 , RGD:1624170
NCBI chr 7:85,566,520...85,594,526
Ensembl chr 7:85,566,520...85,594,538
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Ubash3b
ubiquitin associated and SH3 domain containing, B
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:5619442|PMID:23149425)
RGD
PMID:23149425 PMID:21873635
MGI:5619442 , RGD:13792537
NCBI chr 8:41,385,419...41,532,248
Ensembl chr 8:41,388,341...41,532,201
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Vegfa
vascular endothelial growth factor A
IMP
RGD
PMID:15312247
RGD:1580559
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
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Abca4
ATP binding cassette subfamily A member 4
acts_upstream_of_or_within
ISO
MGI:1857860 (MGI:2136674|PMID:11431429)
RGD
PMID:11431429
MGI:2136674
NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
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Adgrv1
adhesion G protein-coupled receptor V1
involved_in
ISO
(PMID:14740321)
RGD
PMID:14740321
NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
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Atp1b2
ATPase Na+/K+ transporting subunit beta 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:69165|PMID:7525597)
Ensembl RGD
PMID:7525597
GO_REF:0000107 MGI:69165
NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933
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Bbs1
Bardet-Biedl syndrome 1
involved_in
ISO
(PMID:17980398)
RGD
PMID:17980398
NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086
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Bbs10
Bardet-Biedl syndrome 10
involved_in
ISO
(PMID:17980398)
RGD
PMID:17980398
NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
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Bbs12
Bardet-Biedl syndrome 12
acts_upstream_of_or_within involved_in
ISO IBA
MGI:5444297 (MGI:5444069|PMID:22958920), (MGI:5462139|PMID:22869374) PMID:21873635
RGD
PMID:22869374 PMID:22958920 PMID:21873635
MGI:5444069 MGI:5462139 , RGD:13792537
NCBI chr 2:120,203,396...120,221,024
Ensembl chr 2:120,203,428...120,219,255
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Bbs2
Bardet-Biedl syndrome 2
acts_upstream_of_or_within
ISO
MGI:3521669 (MGI:3512844|PMID:15539463)
RGD
PMID:15539463
MGI:3512844
NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993
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Bbs4
Bardet-Biedl syndrome 4
acts_upstream_of_or_within
ISO
MGI:2384917|MGI:3045473|MGI:3055492 (MGI:3717936|PMID:17591906), (MGI:3784949|PMID:16794820), (MGI:4940001|PMID:20398886), (MGI:4949555|PMID:21444805), (MGI:5525015|PMID:23943788)
RGD
PMID:16794820 PMID:17591906 PMID:20398886 PMID:21444805 PMID:23943788
MGI:3717936 MGI:3784949 MGI:4940001 MGI:4949555 MGI:5525015
NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
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Bsg
basigin (Ok blood group)
involved_in
ISO ISS
(PMID:25957687) (MGI:6436439|PMID:25957687) GO_REF:0000024
RGD UniProt
PMID:25957687
GO_REF:0000024 MGI:6436439
NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
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Cdh23
cadherin-related 23
involved_in
ISO IEA
(PMID:16679490) GO_REF:0000107
RGD Ensembl
PMID:16679490
GO_REF:0000107
NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
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Cdhr1
cadherin-related family member 1
involved_in acts_upstream_of_or_within
ISO
(PMID:20805371) MGI:3046299 (MGI:2154844|PMID:11738025)
RGD
PMID:11738025 PMID:20805371
MGI:2154844
NCBI chr16:12,843,436...12,863,321
Ensembl chr16:12,843,437...12,863,396
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Cep290
centrosomal protein 290
acts_upstream_of_or_within
ISO
MGI:2143311|MGI:3624136 (MGI:5525015|PMID:23943788)
RGD
PMID:23943788
MGI:5525015
NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
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Cib2
calcium and integrin binding family member 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5487486|PMID:23023331)
UniProt RGD
PMID:23023331
GO_REF:0000024 MGI:5487486
NCBI chr 8:54,930,265...54,947,157
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Clcn3
chloride voltage-gated channel 3
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2183297 (MGI:2182197|PMID:11182090)
Ensembl RGD
PMID:11182090
GO_REF:0000107 MGI:2182197
NCBI chr16:29,127,419...29,200,133
Ensembl chr16:29,127,419...29,200,119
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Cln8
CLN8, transmembrane ER and ERGIC protein
acts_upstream_of_or_within
ISO
MGI:1856959 (MGI:1096072|PMID:9151333), (MGI:3695117|PMID:15565184)
RGD
PMID:9151333 PMID:15565184
MGI:1096072 MGI:3695117
NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
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Clrn1
clarin 1
involved_in
ISO IEA
(PMID:15521980) GO_REF:0000107
RGD Ensembl
PMID:15521980
GO_REF:0000107
NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
G
Cngb1
cyclic nucleotide gated channel subunit beta 1
acts_upstream_of_or_within
ISO
MGI:3527896 (MGI:3527312|PMID:15634774)
RGD
PMID:15634774
MGI:3527312
NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
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Crb1
crumbs cell polarity complex component 1
acts_upstream_of_or_within
ISO
(MGI:3696487|PMID:17234588), (MGI:5608935|PMID:25147295)
RGD
PMID:17234588 PMID:25147295
MGI:3696487 MGI:5608935
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
G
Crb2
crumbs cell polarity complex component 2
involved_in
ISO
(MGI:5461109|PMID:23001562)
RGD
PMID:23001562
MGI:5461109
NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
G
Crocc
ciliary rootlet coiled-coil, rootletin
acts_upstream_of_or_within
ISO
MGI:3580447 (MGI:3580205|PMID:15870283)
RGD
PMID:15870283
MGI:3580205
NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578
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Dram2
DNA damage regulated autophagy modulator 2
involved_in
ISO IBA ISS
(PMID:25983245) PMID:21873635 (MGI:5705208|PMID:25983245) GO_REF:0000024
RGD UniProt
PMID:25983245 PMID:21873635
GO_REF:0000024 MGI:5705208 , RGD:13792537
NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
acts_upstream_of_or_within
ISO
MGI:1932102 (MGI:3699047|PMID:17145777)
RGD
PMID:17145777
MGI:3699047
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
G
Esrrb
estrogen-related receptor beta
involved_in
ISS ISO
GO_REF:0000024 (MGI:4457950|PMID:20534447)
UniProt RGD
PMID:20534447
GO_REF:0000024 MGI:4457950
NCBI chr 6:106,007,662...106,163,136
Ensembl chr 6:106,008,095...106,160,791
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Iqcb1
IQ motif containing B1
involved_in
ISO
(PMID:15723066)
RGD
PMID:15723066
NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093
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Lca5
lebercilin LCA5
acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (MGI:5050784|PMID:21606596)
UniProt RGD
PMID:21606596
GO_REF:0000024 MGI:5050784
NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956
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Mak
male germ cell-associated kinase
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2179972 (MGI:5298333|PMID:21148103)
UniProt RGD
PMID:21148103
GO_REF:0000024 MGI:5298333
NCBI chr17:23,683,674...23,731,125
Ensembl chr17:23,693,878...23,730,001
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Map1a
microtubule-associated protein 1A
acts_upstream_of_or_within
ISO
MGI:109571|MGI:2651573 (MGI:5489838|PMID:22323461)
RGD
PMID:22323461
MGI:5489838
NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899
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Mdm1
Mdm1 nuclear protein
acts_upstream_of_or_within
ISO
MGI:2664155 (MGI:3822263|PMID:18805803)
RGD
PMID:18805803
MGI:3822263
NCBI chr 7:53,729,603...53,766,034
Ensembl chr 7:53,729,610...53,766,034
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Mkks
MKKS centrosomal shuttling protein
acts_upstream_of_or_within
ISO
MGI:3526444|MGI:3608879 (MGI:3581923|PMID:15772095), (MGI:3607949|PMID:16170314)
RGD
PMID:15772095 PMID:16170314
MGI:3581923 MGI:3607949
NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162
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Nphp3
nephrocystin 3
involved_in
ISO
(PMID:12872122)
RGD
PMID:12872122
NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383
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Nphp4
nephrocystin 4
acts_upstream_of_or_within
ISO
MGI:3032515 (MGI:4867588|PMID:21078623)
RGD
PMID:21078623
MGI:4867588
NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
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Nxnl1
nucleoredoxin-like 1
involved_in
ISO
(PMID:25957687) (MGI:6436439|PMID:25957687)
RGD
PMID:25957687
MGI:6436439
NCBI chr16:18,270,604...18,279,797
Ensembl chr16:18,262,688...18,279,987
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Nxnl2
nucleoredoxin-like 2
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr17:14,031,151...14,035,897
Ensembl chr17:14,031,153...14,036,189
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Pcdh15
protocadherin related 15
involved_in
ISO
(PMID:11398101)
RGD
PMID:11398101
NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
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Pde6a
phosphodiesterase 6A
acts_upstream_of_or_within
ISO
MGI:4867884 (MGI:5587955|PMID:22183357)
RGD
PMID:22183357
MGI:5587955
NCBI chr18:54,676,863...54,749,644
Ensembl chr18:54,676,863...54,748,816
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Prom1
prominin 1
involved_in
ISO IBA
(PMID:18654668) PMID:21873635
RGD
PMID:18654668 PMID:21873635
RGD:13792537
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
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Rho
rhodopsin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:5609882 (MGI:5587955|PMID:22183357) (MGI:6508517|PMID:32312889)
Ensembl RGD
PMID:22183357 PMID:32312889
GO_REF:0000107 MGI:5587955 MGI:6508517
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
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Rp1
RP1, axonemal microtubule associated
involved_in
ISO
(MGI:3604930|PMID:16126734)
RGD
PMID:16126734
MGI:3604930
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
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Rp1l1
RP1 like 1
involved_in
ISO
(PMID:23281133) (MGI:4353917|PMID:19657028)
RGD
PMID:19657028 PMID:23281133
MGI:4353917
NCBI chr15:38,259,595...38,271,269
Ensembl chr15:38,259,928...38,270,316
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Slc2a1
solute carrier family 2 member 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416
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Spata7
spermatogenesis associated 7
involved_in
IBA ISS ISO IEA
PMID:21873635 GO_REF:0000024 (MGI:5608598|PMID:25398945) GO_REF:0000107
UniProt RGD Ensembl
PMID:25398945 PMID:21873635
GO_REF:0000024 GO_REF:0000107 MGI:5608598 , RGD:13792537
NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
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Tub
TUB bipartite transcription factor
acts_upstream_of_or_within
ISO
MGI:1857081 (MGI:1352376|PMID:10629044)
RGD
PMID:10629044
MGI:1352376
NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812
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Tulp1
TUB like protein 1
involved_in acts_upstream_of_or_within
ISO
(MGI:4397555|PMID:19218615) MGI:1857081|MGI:1859921|MGI:4867883 (MGI:1352266|PMID:10607826), (MGI:2388540|PMID:10549638), (MGI:3717940|PMID:17525220), (MGI:5587955|PMID:22183357)
RGD
PMID:10549638 PMID:10607826 PMID:17525220 PMID:19218615 PMID:22183357
MGI:1352266 MGI:2388540 MGI:3717940 MGI:4397555 MGI:5587955
NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
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Ush1c
USH1 protein network component harmonin
involved_in
ISO
(PMID:11398101)
RGD
PMID:11398101
NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
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Ush1g
USH1 protein network component sans
involved_in
ISO
(PMID:11398101)
RGD
PMID:11398101
NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
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Ush2a
usherin
involved_in acts_upstream_of_or_within
ISO IEA
(PMID:10090909) GO_REF:0000107 MGI:3702040 (MGI:3700725|PMID:17360538)
RGD Ensembl
PMID:10090909 PMID:17360538
GO_REF:0000107 MGI:3700725
NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
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Usp45
ubiquitin specific peptidase 45
involved_in
ISO
(MGI:6383248|PMID:30573563)
RGD
PMID:30573563
MGI:6383248
NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420
G
Angpt1
angiopoietin 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:19148554)
Ensembl RGD
PMID:19148554
GO_REF:0000107
NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067
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Ocln
occludin
involved_in
ISO
(PMID:24854121)
RGD
PMID:24854121
NCBI chr 2:31,657,217...31,707,466
Ensembl chr 2:31,657,220...31,764,150
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Tjp1
tight junction protein 1
involved_in
ISO IBA
(PMID:24854121) PMID:21873635
RGD
PMID:24854121 PMID:21873635
RGD:13792537
NCBI chr 1:118,849,838...119,094,492
Ensembl chr 1:118,849,838...119,094,432
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Tjp2
tight junction protein 2
involved_in
ISO IBA
(PMID:19148554) PMID:21873635
RGD
PMID:19148554 PMID:21873635
RGD:13792537
NCBI chr 1:221,709,745...221,838,383
Ensembl chr 1:221,709,745...221,838,295
G
Tjp3
tight junction protein 3
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 7:8,427,650...8,446,279
Ensembl chr 7:8,432,811...8,446,279
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Adam8
ADAM metallopeptidase domain 8
involved_in
ISO
(MGI:5009189|PMID:11341326), (MGI:5009349|PMID:20683884)
RGD
PMID:11341326 PMID:20683884
MGI:5009189 MGI:5009349
NCBI chr 1:194,776,559...194,789,330
Ensembl chr 1:194,770,060...194,788,801
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Ahsg
alpha-2-HS-glycoprotein
IMP
RGD
PMID:10500999
RGD:1625797
NCBI chr11:78,117,903...78,145,956
Ensembl chr11:78,117,918...78,145,999
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Car2
carbonic anhydrase 2
IMP
RGD
PMID:8674544
RGD:1600722
NCBI chr 2:86,741,625...86,756,766
Ensembl chr 2:86,741,626...86,756,818
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Dcstamp
dendrocyte expressed seven transmembrane protein
involved_in
ISO
(MGI:3588832|PMID:16061724), (MGI:5426134|PMID:17164993), (MGI:5426135|PMID:16937266)
RGD
PMID:16061724 PMID:16937266 PMID:17164993
MGI:3588832 MGI:5426134 MGI:5426135
NCBI chr 7:70,807,455...70,822,067
Ensembl chr 7:70,807,581...70,822,078
G
Def8
differentially expressed in FDCP 8 homolog
involved_in
ISS ISO
GO_REF:0000024 (MGI:5806241|PMID:27777970)
UniProt RGD
PMID:27777970
GO_REF:0000024 MGI:5806241
NCBI chr19:51,474,783...51,495,638
Ensembl chr19:51,474,878...51,495,638
G
Dlk1
delta like non-canonical Notch ligand 1
acts_upstream_of_or_within
ISO
MGI:3526402 (MGI:5780798|PMID:21308776)
RGD
PMID:21308776
MGI:5780798
NCBI chr 6:128,410,216...128,417,518
Ensembl chr 6:128,410,316...128,417,522
G
Egfr
epidermal growth factor receptor
IMP
RGD
PMID:2981075
RGD:10395245
NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
G
Fcgr3a
Fc gamma receptor 3A
involved_in
ISO
(MGI:5641770|PMID:25824719)
RGD
PMID:25824719
MGI:5641770
NCBI chr13:83,249,905...83,259,921
Ensembl chr13:83,249,872...83,259,921
G
Fshb
follicle stimulating hormone subunit beta
acts_upstream_of_or_within
ISO
MGI:1857434 (MGI:3692338|PMID:16630814)
RGD
PMID:16630814
MGI:3692338
NCBI chr 3:93,548,560...93,552,370
Ensembl chr 3:93,548,560...93,552,370
G
Idua
alpha-L-iduronidase
acts_upstream_of_or_within
ISO
MGI:2176236 (MGI:4397742|PMID:19834056)
RGD
PMID:19834056
MGI:4397742
NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
G
Itgb3
integrin subunit beta 3
IMP
RGD
PMID:8603604
RGD:5024929
NCBI chr10:89,509,917...89,564,679
Ensembl chr10:89,509,989...89,564,679
G
Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:2673982 (MGI:4365357|PMID:18505367)
RGD
PMID:18505367
MGI:4365357
NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
G
Ltbp3
latent transforming growth factor beta binding protein 3
acts_upstream_of_or_within
ISO
MGI:2180017 (MGI:3719740|PMID:15878314)
RGD
PMID:15878314
MGI:3719740
NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975
G
Mc4r
melanocortin 4 receptor
involved_in
ISO
(PMID:16614075) (MGI:3696590|PMID:16614075)
RGD
PMID:16614075
MGI:3696590
NCBI chr18:60,419,832...60,421,719
Ensembl chr18:60,419,832...60,421,719
G
Oscar
osteoclast associated Ig-like receptor
acts_upstream_of_or_within
ISO
(MGI:2178877|PMID:11805147)
RGD
PMID:11805147
MGI:2178877
NCBI chr 1:65,607,214...65,615,395
Ensembl chr 1:65,607,410...65,613,758
G
Plekhm1
pleckstrin homology and RUN domain containing M1
involved_in
ISS ISO
GO_REF:0000024 (MGI:5806241|PMID:27777970)
UniProt RGD
PMID:27777970
GO_REF:0000024 MGI:5806241
NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412
G
Ppargc1b
PPARG coactivator 1 beta
involved_in
ISO
(MGI:3838421|PMID:19252502)
RGD
PMID:19252502
MGI:3838421
NCBI chr18:54,758,891...54,861,103
Ensembl chr18:54,758,902...54,861,194
G
Prkca
protein kinase C, alpha
involved_in
ISO
(MGI:5284791|PMID:16014375)
RGD
PMID:16014375
MGI:5284791
NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
G
Ptger4
prostaglandin E receptor 4
IMP
RGD
PMID:11792579
RGD:729815
NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670
G
Spp1
secreted phosphoprotein 1
involved_in
IDA IBA
PMID:21873635
RGD GO_Central
PMID:11792563 PMID:21873635
RGD:1581129 , RGD:13792537
NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
G
Src
SRC proto-oncogene, non-receptor tyrosine kinase
IMP
RGD
PMID:8514886
RGD:150524326
NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
G
Syk
spleen associated tyrosine kinase
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:3703840|PMID:17353363) GO_REF:0000107
UniProt RGD Ensembl
PMID:17353363
GO_REF:0000024 GO_REF:0000107 MGI:3703840
NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410
G
Tf
transferrin
involved_in
ISO
(MGI:3838421|PMID:19252502)
RGD
PMID:19252502
MGI:3838421
NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511
G
Tfrc
transferrin receptor
involved_in
ISO
(MGI:3838421|PMID:19252502)
RGD
PMID:19252502
MGI:3838421
NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
G
Tmem64
transmembrane protein 64
acts_upstream_of_or_within involved_in
ISO IBA
MGI:3880885 (MGI:5495340|PMID:23395171) PMID:21873635
RGD
PMID:23395171 PMID:21873635
MGI:5495340 , RGD:13792537
NCBI chr 5:28,698,947...28,745,384
Ensembl chr 5:28,698,918...28,745,330
G
Tnfrsf11a
TNF receptor superfamily member 11A
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:2178877|PMID:11805147)
RGD
PMID:11805147 PMID:21873635
MGI:2178877 , RGD:13792537
NCBI chr13:21,928,370...21,986,719
Ensembl chr13:21,928,408...21,986,695
G
Tnfsf11
TNF superfamily member 11
involved_in
IMP IEA ISO
GO_REF:0000107 (PMID:17241109)
Ensembl RGD
PMID:17241109 PMID:11092398
GO_REF:0000107, RGD:730134
NCBI chr15:53,674,990...53,705,171
Ensembl chr15:53,673,877...53,705,445
G
Slc22a5
solute carrier family 22 member 5
involved_in
ISO
(PMID:18005709)
RGD
PMID:18005709
NCBI chr10:38,008,303...38,035,474
Ensembl chr10:38,008,311...38,035,309
G
Prdx5
peroxiredoxin 5
involved_in
ISO
(PMID:15276323)
RGD
PMID:15276323
NCBI chr 1:204,099,826...204,103,589
Ensembl chr 1:204,099,826...204,114,268
G
Xiap
X-linked inhibitor of apoptosis
involved_in
ISO
(MGI:6268242|PMID:30389919)
RGD
PMID:30389919
MGI:6268242
NCBI chr X:120,890,537...120,938,413
Ensembl chr X:120,897,907...120,934,700
G
Zeb2
zinc finger E-box binding homeobox 2
IMP
RGD
PMID:34334113
RGD:155882538
NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
G
Calcr
calcitonin receptor
NOT|acts_upstream_of_or_within
ISO
MGI:3038975 (MGI:3037515|PMID:14970190)
RGD
PMID:14970190
MGI:3037515
NCBI chr 4:31,661,270...31,736,392
Ensembl chr 4:31,661,273...31,736,392
G
Car2
carbonic anhydrase 2
TAS
RGD
PMID:9665810
RGD:1342423
NCBI chr 2:86,741,625...86,756,766
Ensembl chr 2:86,741,626...86,756,818
G
Csf1r
colony stimulating factor 1 receptor
involved_in
IMP
PMID:17121910
UniProt
PMID:17121910
RGD:2293713
NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415
G
Il20ra
interleukin 20 receptor subunit alpha
acts_upstream_of_or_within
ISO
MGI:5302406 (MGI:5296273|PMID:21844205)
RGD
PMID:21844205
MGI:5296273
NCBI chr 1:14,424,215...14,494,226
Ensembl chr 1:14,451,228...14,493,602
G
Nf1
neurofibromin 1
involved_in acts_upstream_of_or_within
ISS ISO IEA
GO_REF:0000024 MGI:1857478 (MGI:3689489|PMID:17053831) GO_REF:0000107
HGNC-UCL RGD Ensembl
PMID:17053831
GO_REF:0000024 GO_REF:0000107 MGI:3689489
NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
G
Pdk4
pyruvate dehydrogenase kinase 4
involved_in
ISO
(MGI:5303050|PMID:21803180)
RGD
PMID:21803180
MGI:5303050
NCBI chr 4:33,591,796...33,601,798
Ensembl chr 4:33,589,799...33,601,850
G
S1pr1
sphingosine-1-phosphate receptor 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:3839226|PMID:19204730)
UniProt RGD
PMID:19204730
GO_REF:0000024 MGI:3839226
NCBI chr 2:203,624,752...203,629,110
Ensembl chr 2:203,621,587...203,629,681
G
Siglec15
sialic acid binding Ig-like lectin 15
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 (MGI:5467208|PMID:22451653)
RGD
PMID:22451653 PMID:21873635
MGI:5467208 , RGD:13792537
NCBI chr18:71,507,773...71,521,722
Ensembl chr18:71,505,399...71,521,881
G
Slc4a2
solute carrier family 4 member 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5469753|PMID:23341620)
UniProt RGD
PMID:23341620
GO_REF:0000024 MGI:5469753
NCBI chr 4:10,736,419...10,754,407
Ensembl chr 4:10,736,425...10,752,965
G
Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:2385468|MGI:3053819 (MGI:3830946|PMID:17698607)
UniProt RGD
PMID:17698607
GO_REF:0000024 MGI:3830946
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
G
Neurod1
neuronal differentiation 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:5009210|PMID:9512516)
UniProt RGD
PMID:9512516
GO_REF:0000024 MGI:5009210
NCBI chr 3:64,360,222...64,363,526
Ensembl chr 3:64,359,395...64,363,649
G
Ndp
norrin cystine knot growth factor NDP
acts_upstream_of_or_within
ISO
MGI:2676199 (MGI:5916282|PMID:28575130)
RGD
PMID:28575130
MGI:5916282
NCBI chr X:5,796,487...5,820,934
Ensembl chr X:5,796,487...5,820,934
G
Vstm4
V-set and transmembrane domain containing 4
acts_upstream_of_or_within
ISO
MGI:6393534 (MGI:6393395|PMID:31698979)
RGD
PMID:31698979
MGI:6393395
NCBI chr16:8,120,336...8,200,272
Ensembl chr16:8,120,336...8,200,269
G
Actb
actin, beta
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
G
Actg1
actin, gamma 1
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr10:105,619,738...105,622,587
Ensembl chr10:105,619,737...105,624,232
G
Aipl1
aryl hydrocarbon receptor-interacting protein-like 1
acts_upstream_of_or_within
ISO
MGI:3054784|MGI:3054793 (MGI:3054118|PMID:15365173), (MGI:3054134|PMID:15365178)
RGD
PMID:15365173 PMID:15365178
MGI:3054118 MGI:3054134
NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
G
Alb
albumin
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836
G
Atp1b2
ATPase Na+/K+ transporting subunit beta 2
acts_upstream_of_or_within
ISO
(MGI:2159503|PMID:8793730)
RGD
PMID:8793730
MGI:2159503
NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933
G
Azgp1
alpha-2-glycoprotein 1, zinc-binding
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr12:16,930,990...16,939,333
Ensembl chr12:16,931,024...16,939,091
G
B2m
beta-2 microglobulin
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766
G
Bbs1
Bardet-Biedl syndrome 1
acts_upstream_of_or_within
ISO
MGI:3055491 (MGI:3055247|PMID:15322545)
RGD
PMID:15322545
MGI:3055247
NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086
G
Bbs4
Bardet-Biedl syndrome 4
acts_upstream_of_or_within
ISO
MGI:3045473|MGI:3055492 (MGI:3044824|PMID:15173597), (MGI:3055247|PMID:15322545)
RGD
PMID:15173597 PMID:15322545
MGI:3044824 MGI:3055247
NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
G
Ccdc66
coiled-coil domain containing 66
involved_in
ISO
(PMID:19777273)
RGD
PMID:19777273
NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
G
Cdh3
cadherin 3
involved_in
ISO
(PMID:23143461)
RGD
PMID:23143461
NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084
G
Cngb1
cyclic nucleotide gated channel subunit beta 1
involved_in
ISO IBA
(PMID:15557452) PMID:21873635
RGD
PMID:15557452 PMID:21873635
RGD:13792537
NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
G
Crb2
crumbs cell polarity complex component 2
involved_in
ISO
(MGI:5461109|PMID:23001562)
RGD
PMID:23001562
MGI:5461109
NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
G
Hspb1
heat shock protein family B (small) member 1
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr12:20,794,014...20,795,675
Ensembl chr12:20,794,028...20,795,743
G
Igkc
immunoglobulin kappa constant
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
G
Jchain
joining chain of multimeric IgA and IgM
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr14:19,538,560...19,546,384
Ensembl chr14:19,538,952...19,546,298
G
Krt1
keratin 1
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 7:132,976,618...132,981,844
Ensembl chr 7:132,976,620...132,981,844
G
Lcn1
lipocalin 1
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 3:9,532,860...9,537,859
Ensembl chr 3:9,532,915...9,536,577
G
Ltf
lactotransferrin
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
G
Lyz2
lysozyme 2
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 7:52,906,810...52,912,154
Ensembl chr 7:52,906,811...52,912,106
G
Oprpn
opiorphin prepropeptide
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr14:19,702,535...19,717,550
Ensembl chr14:19,702,535...19,717,550
G
Pigr
polymeric immunoglobulin receptor
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr13:42,298,905...42,326,877
Ensembl chr13:42,298,914...42,326,875
G
Pip
prolactin induced protein
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 4:70,787,627...70,791,921
Ensembl chr 4:70,787,627...70,791,921
G
Poc1b
POC1 centriolar protein B
involved_in
IEA ISO
GO_REF:0000107 (PMID:25044745)
Ensembl RGD
PMID:25044745
GO_REF:0000107
NCBI chr 7:33,924,035...34,025,908
Ensembl chr 7:33,924,189...34,025,903
G
Potef
POTE ankyrin domain family, member F
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr18:23,626,518...23,629,132
G
Prdx1
peroxiredoxin 1
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 5:130,147,276...130,162,850
Ensembl chr 5:130,147,204...130,162,856
G
Prr4
proline rich 4
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 4:166,605,104...166,608,901
Ensembl chr 4:166,543,755...166,607,586
G
Rpe65
retinoid isomerohydrolase RPE65
involved_in
ISO
(PMID:15557452)
RGD
PMID:15557452
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
G
Slc28a2
solute carrier family 28 member 2
involved_in
IDA IBA
PMID:21873635
RGD GO_Central
PMID:16487924 PMID:21873635
RGD:2317453 , RGD:13792537
NCBI chr 3:109,324,815...109,387,702
Ensembl chr 3:109,366,996...109,387,702
G
Slc28a3
solute carrier family 28 member 3
IDA
RGD
PMID:16487924
RGD:2317453
NCBI chr17:6,062,563...6,112,965
Ensembl chr17:6,062,549...6,114,038
G
Sod1
superoxide dismutase 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857873 (MGI:3654862|PMID:16844785)
UniProt RGD
PMID:16844785
GO_REF:0000024 MGI:3654862
NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
G
Tf
transferrin
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511
G
Tulp1
TUB like protein 1
involved_in
ISO
(PMID:15557452)
RGD
PMID:15557452
NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
G
Wdr36
WD repeat domain 36
acts_upstream_of_or_within
ISO
(MGI:4822532|PMID:20631153)
RGD
PMID:20631153
MGI:4822532
NCBI chr18:24,473,645...24,501,773
Ensembl chr18:24,473,663...24,508,092
G
Whrn
whirlin
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:4454934|PMID:20502675) (PMID:17171570) GO_REF:0000024
Ensembl RGD UniProt
PMID:17171570 PMID:20502675
GO_REF:0000024 GO_REF:0000107 MGI:4454934
NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
G
Zg16b
zymogen granule protein 16B
involved_in
ISO
(PMID:23580065)
UniProt
PMID:23580065
NCBI chr10:12,970,888...12,984,170
Ensembl chr10:12,979,020...12,983,572
G
Acaca
acetyl-CoA carboxylase alpha
acts_upstream_of_or_within
ISO
MGI:3700954|MGI:3700955 (MGI:3700580|PMID:17210641)
RGD
PMID:17210641
MGI:3700580
NCBI chr10:69,014,261...69,276,453
Ensembl chr10:69,014,170...69,276,457
G
Akr1b1
aldo-keto reductase family 1 member B1
IMP
lens opacification
RGD
PMID:21376710
RGD:8548687
NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157
G
Ankrd11
ankyrin repeat domain containing 11
acts_upstream_of_or_within
ISO
MGI:3797584 (MGI:3796348|PMID:17986521)
RGD
PMID:17986521
MGI:3796348
NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962
G
Bap1
Brca1 associated protein 1
involved_in
ISO IEA
MGI:5439652 (MGI:5436339|PMID:22878500) GO_REF:0000107
RGD Ensembl
PMID:22878500
GO_REF:0000107 MGI:5436339
NCBI chr16:6,446,709...6,455,535
Ensembl chr16:6,446,709...6,455,535
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Ccn2
cellular communication network factor 2
acts_upstream_of_or_within
ISO
MGI:4949916 (MGI:5520132|PMID:23839921)
RGD
PMID:23839921
MGI:5520132
NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
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Cd34
CD34 molecule
involved_in
ISO ISS
(PMID:12939361) GO_REF:0000024
RGD UniProt
PMID:12939361
GO_REF:0000024
NCBI chr13:106,480,074...106,499,462
Ensembl chr13:106,480,043...106,499,832
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Col11a2
collagen type XI alpha 2 chain
acts_upstream_of_or_within
ISO
MGI:2154689 (MGI:3691874|PMID:11237662)
RGD
PMID:11237662
MGI:3691874
NCBI chr20:4,786,929...4,816,598
Ensembl chr20:4,786,929...4,815,985
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Col2a1
collagen type II alpha 1 chain
acts_upstream_of_or_within
ISO
MGI:2152978 (MGI:3691874|PMID:11237662)
RGD
PMID:11237662
MGI:3691874
NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
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Col3a1
collagen type III alpha 1 chain
involved_in
ISO
(MGI:6279612|PMID:29551664)
RGD
PMID:29551664
MGI:6279612
NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
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Col9a1
collagen type IX alpha 1 chain
acts_upstream_of_or_within
ISO
MGI:2152964 (MGI:67050|PMID:8197187)
RGD
PMID:8197187
MGI:67050
NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
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Ctnnb1
catenin beta 1
acts_upstream_of_or_within
ISO
MGI:1858008 (MGI:3807613|PMID:18635608)
RGD
PMID:18635608
MGI:3807613
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Gnas
GNAS complex locus
acts_upstream_of_or_within
ISO
MGI:4459474 (MGI:4454202|PMID:20427744)
RGD
PMID:20427744
MGI:4454202
NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262 Ensembl chr 3:163,071,417...163,127,262
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Hoxa13
homeo box A13
acts_upstream_of_or_within
ISO
MGI:2152356 (MGI:3797428|PMID:18483557)
RGD
PMID:18483557
MGI:3797428
NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091
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Itgb1
integrin subunit beta 1
IMP
RGD
PMID:17118629
RGD:1625131
NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
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Kcnj1
potassium inwardly-rectifying channel, subfamily J, member 1
acts_upstream_of_or_within
ISO
MGI:2388372 (MGI:2387900|PMID:12122007)
RGD
PMID:12122007
MGI:2387900
NCBI chr 8:30,779,883...30,808,607
Ensembl chr 8:30,753,617...30,813,796
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Mir140
microRNA 140
acts_upstream_of_or_within
ISO
MGI:4461000 (MGI:4454342|PMID:20466812)
RGD
PMID:20466812
MGI:4454342
NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675
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Nanos1
nanos C2HC-type zinc finger 1
acts_upstream_of_or_within
ISO
MGI:97874 (MGI:5607667|PMID:25100735)
RGD
PMID:25100735
MGI:5607667
NCBI chr 1:259,897,659...259,901,501
Ensembl chr 1:259,897,939...259,898,730
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Nfib
nuclear factor I/B
acts_upstream_of_or_within
ISO
MGI:5052268 (MGI:6442635|PMID:32393888)
RGD
PMID:32393888
MGI:6442635
NCBI chr 5:96,759,208...96,973,092
Ensembl chr 5:96,764,653...96,975,479
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Nfix
nuclear factor I X
acts_upstream_of_or_within
ISO
MGI:3802570 (MGI:6442635|PMID:32393888)
RGD
PMID:32393888
MGI:6442635
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
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Pdgfrb
platelet derived growth factor receptor beta
acts_upstream_of_or_within
ISO
MGI:2135508 (MGI:3696608|PMID:17143286)
RGD
PMID:17143286
MGI:3696608
NCBI chr18:54,500,002...54,538,843
Ensembl chr18:54,499,964...54,538,843
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Prickle1
prickle planar cell polarity protein 1
involved_in
ISO IEA
MGI:5645931 (MGI:6117543|PMID:29450535) GO_REF:0000107
RGD Ensembl
PMID:29450535
GO_REF:0000107 MGI:6117543
NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
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Prlh
prolactin releasing hormone
acts_upstream_of_or_within
ISO
MGI:3832409 (MGI:3831610|PMID:19033670)
RGD
PMID:19033670
MGI:3831610
NCBI chr 9:91,543,128...91,549,022
Ensembl chr 9:91,547,901...91,548,818
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Rb1
RB transcriptional corepressor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2669254 (MGI:5607667|PMID:25100735)
Ensembl RGD
PMID:25100735
GO_REF:0000107 MGI:5607667
NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
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Scx
scleraxis bHLH transcription factor
involved_in
ISO
(MGI:4413438|PMID:18802027)
RGD
PMID:18802027
MGI:4413438
NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
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Sox9
SRY-box transcription factor 9
involved_in
ISS ISO
GO_REF:0000024 (MGI:4947506|PMID:20056916)
UniProt RGD
PMID:20056916
GO_REF:0000024 MGI:4947506
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
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Stk11
serine/threonine kinase 11
acts_upstream_of_or_within
ISO
MGI:3579498 (MGI:3778268|PMID:18381428)
RGD
PMID:18381428
MGI:3778268
NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
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Tp53inp2
tumor protein p53 inducible nuclear protein 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1931135|MGI:5637673 (MGI:5582129|PMID:24713655)
Ensembl RGD
PMID:24713655
GO_REF:0000107 MGI:5582129
NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
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Trim32
tripartite motif-containing 32
acts_upstream_of_or_within
ISO
MGI:3837468 (MGI:3836840|PMID:19155210)
RGD
PMID:19155210
MGI:3836840
NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018
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Wwtr1
WW domain containing transcription regulator 1
involved_in
ISO
(MGI:5509071|PMID:23918388)
RGD
PMID:23918388
MGI:5509071
NCBI chr 2:141,651,159...141,766,919
Ensembl chr 2:141,648,108...141,766,968
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Yap1
Yes1 associated transcriptional regulator
involved_in
ISO
(MGI:5509071|PMID:23918388)
RGD
PMID:23918388
MGI:5509071
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
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