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ONTOLOGY REPORT - ANNOTATIONS


Term:anatomical structure homeostasis
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Accession:GO:0060249 term browser browse the term
Definition:A homeostatic process involved in the maintenance of an internal steady state within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms:exact_synonym: anatomical structure maintenance



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anatomical structure homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO (PMID:26764600) RGD PMID:26764600 NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502
JBrowse link
bone resorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant involved_in
acts_upstream_of_or_within
TAS
IEP
IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
MGI:2180086 (PMID:8898228)
Ensembl
TreeGrafter
GO_Central
RGD
PMID:8898228 PMID:1722212 PMID:20069278 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:1298628, RGD:2315871 NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929
JBrowse link
G Adrb2 adrenoceptor beta 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1859675 (PMID:15724149)
Ensembl
RGD
PMID:15724149 GO_REF:0000107 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
JBrowse link
G Ccdc154 coiled-coil domain containing 154 acts_upstream_of_or_within ISO MGI:5702426 (PMID:20121924) RGD PMID:20121924 NCBI chr10:14,177,271...14,187,378
Ensembl chr10:14,177,278...14,187,253
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858008|MGI:2148567|MGI:3041864|MGI:98504 (PMID:15866165)
Ensembl
RGD
PMID:15866165 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ctsk cathepsin K acts_upstream_of_or_within IMP
ISO
MGI:2182131 (PMID:19834056) RGD PMID:19834056 PMID:10430032 RGD:1601030 NCBI chr 2:183,058,586...183,069,551
Ensembl chr 2:183,058,569...183,069,550
JBrowse link
G Ctss cathepsin S IMP RGD PMID:10470376 RGD:5687153 NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (PMID:28798354) RGD PMID:28798354 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:29415886) RGD PMID:29415886 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Gpr55 G protein-coupled receptor 55 involved_in ISO (PMID:19805329) RGD PMID:19805329 NCBI chr 9:86,584,906...86,640,601
Ensembl chr 9:86,590,885...86,640,613
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO MGI:88276 (PMID:15866165) RGD PMID:15866165 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Iapp islet amyloid polypeptide acts_upstream_of ISO MGI:2656235 (PMID:14970190) RGD PMID:14970190 NCBI chr 4:175,237,107...175,244,373
Ensembl chr 4:175,237,115...175,242,920
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10208865) RGD PMID:10208865 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Il7 interleukin 7 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
(PMID:12490655)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12490655 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:94,235,219...94,280,075
Ensembl chr 2:94,234,766...94,280,075
JBrowse link
G Lrrk1 leucine-rich repeat kinase 1 acts_upstream_of_or_within ISO MGI:5568128 (PMID:23526378) RGD PMID:23526378 NCBI chr 1:119,844,360...119,972,885
Ensembl chr 1:119,845,146...119,979,734
JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within_negative_effect ISO (PMID:25043055) RGD PMID:25043055 NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103
JBrowse link
G Ncdn neurochondrin acts_upstream_of_or_within ISO (PMID:10231559) RGD PMID:10231559 NCBI chr 5:139,037,807...139,047,645
Ensembl chr 5:139,037,819...139,047,568
JBrowse link
G Nox4 NADPH oxidase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:11098048)
Ensembl
RGD
PMID:11098048 GO_REF:0000107 NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
JBrowse link
G Pth parathyroid hormone TAS RGD PMID:11145578 RGD:61525 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
JBrowse link
G Pth1r parathyroid hormone 1 receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2154519 (PMID:9832460)
Ensembl
RGD
PMID:9832460 GO_REF:0000107 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISS
ISO
GO_REF:0000024
(MGI:3040548|PMID:14739300)
UniProt
RGD
PMID:14739300 GO_REF:0000024 MGI:3040548 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
JBrowse link
G Rab3d RAB3D, member RAS oncogene family involved_in ISO (PMID:21262767) RGD PMID:21262767 NCBI chr 8:20,438,622...20,449,269
Ensembl chr 8:20,439,294...20,449,185
JBrowse link
G Rab7a RAB7A, member RAS oncogene family IMP RGD PMID:11514537 RGD:729760 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Rac1 Rac family small GTPase 1 IDA RGD PMID:10350213 RGD:1599401 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Rac2 Rac family small GTPase 2 IDA RGD PMID:10350213 RGD:1599401 NCBI chr 7:110,101,344...110,128,718
Ensembl chr 7:110,116,260...110,128,720
JBrowse link
G Snx10 sorting nexin 10 acts_upstream_of_or_within ISO MGI:5690193 (PMID:25811986) RGD PMID:25811986 NCBI chr 4:80,612,648...80,677,005
Ensembl chr 4:80,612,669...80,676,996
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
GO_REF:0000024
MGI:1857247 (PMID:19448635)
GO_REF:0000033
(MGI:3040548|PMID:14739300)
UniProt
RGD
GO_Central
PMID:14739300 PMID:19448635 GO_REF:0000024 GO_REF:0000033 MGI:3040548 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:1856973|MGI:5496553 (PMID:18768394), (PMID:21305608), (PMID:22087326), (PMID:23166162), (PMID:23908015) RGD PMID:18768394 PMID:21305608 PMID:22087326 PMID:23166162 PMID:23908015 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tnfsf11 TNF superfamily member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:12490655)
Ensembl
RGD
PMID:12490655 GO_REF:0000107 NCBI chr15:53,673,850...53,705,325
Ensembl chr15:53,673,877...53,705,445
JBrowse link
G Tns3 tensin 3 acts_upstream_of_or_within ISO (PMID:27505886) RGD PMID:27505886 NCBI chr14:83,173,649...83,405,671
Ensembl chr14:83,173,649...83,405,998
JBrowse link
G Tpp1 tripeptidyl peptidase 1 involved_in ISS
IEA
ISO
PMID:14609438
GO_REF:0000107
(PMID:8215436)
Ensembl
RGD
PMID:8215436 PMID:14609438 GO_REF:0000107, RGD:8554137 NCBI chr 1:160,097,984...160,104,108
Ensembl chr 1:160,096,833...160,104,129
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO
IEA
(MGI:1335941|PMID:10215628)
GO_REF:0000107
RGD
Ensembl
PMID:10215628 GO_REF:0000107 MGI:1335941 NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507
JBrowse link
cartilage homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comp cartilage oligomeric matrix protein involved_in ISO
ISS
IEA
(PMID:32747625)
GO_REF:0000024
GO_REF:0000107
(MGI:6828896|PMID:32747625)
RGD
UniProt
Ensembl
PMID:32747625 GO_REF:0000024 GO_REF:0000107 MGI:6828896 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within ISO MGI:5291960 (PMID:21652695) RGD PMID:21652695 NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886
JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:19834056) RGD PMID:19834056 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
G Mtf1 metal-regulatory transcription factor 1 acts_upstream_of ISO (MGI:5577232|PMID:24529376) RGD PMID:24529376 MGI:5577232 NCBI chr 5:137,062,319...137,107,136
Ensembl chr 5:137,062,376...137,107,136
JBrowse link
G Slc39a8 solute carrier family 39 member 8 acts_upstream_of ISS
ISO
GO_REF:0000024
(MGI:5577232|PMID:24529376)
UniProt
RGD
PMID:24529376 GO_REF:0000024 MGI:5577232 NCBI chr 2:224,171,787...224,319,326
Ensembl chr 2:224,256,654...224,319,129
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO (PMID:24474754) RGD PMID:24474754 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517
JBrowse link
epithelial structure maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cracd capping protein inhibiting regulator of actin dynamics involved_in ISO (MGI:6271776|PMID:30361697) RGD PMID:30361697 MGI:6271776 NCBI chr14:31,284,066...31,520,103
Ensembl chr14:31,284,184...31,522,431
JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin acts_upstream_of_or_within ISO MGI:3580447 (PMID:15870283) RGD PMID:15870283 NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578
JBrowse link
G Cxadr CXADR, Ig-like cell adhesion molecule involved_in ISO
ISS
(PMID:15304526)
GO_REF:0000024
RGD
UniProt
PMID:15304526 GO_REF:0000024 NCBI chr11:16,982,864...17,030,078
Ensembl chr11:16,982,860...17,030,046
JBrowse link
G Ildr1 immunoglobulin-like domain containing receptor 1 involved_in ISO (MGI:5507911|PMID:23239027) RGD PMID:23239027 MGI:5507911 NCBI chr11:64,085,774...64,118,760
Ensembl chr11:64,008,566...64,118,760
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:894670 (PMID:17991461) RGD PMID:17991461 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
JBrowse link
G Ldb2 LIM domain binding 2 acts_upstream_of_or_within ISO MGI:894762 (PMID:17991461) RGD PMID:17991461 NCBI chr14:66,277,044...66,598,071
Ensembl chr14:66,277,085...66,597,778
JBrowse link
G Lsr lipolysis stimulated lipoprotein receptor involved_in ISS
ISO
GO_REF:0000024
(MGI:5507911|PMID:23239027)
UniProt
RGD
PMID:23239027 GO_REF:0000024 MGI:5507911 NCBI chr 1:86,185,769...86,201,952
Ensembl chr 1:86,186,431...86,201,952
JBrowse link
G Mir204 microRNA 204 acts_upstream_of ISO (PMID:20056717) RGD PMID:20056717 NCBI chr 1:220,316,931...220,317,040
Ensembl chr 1:220,316,931...220,317,040
JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4410614|MGI:4433029|MGI:4887578 (PMID:19776033), (PMID:21045211), (PMID:23454480)
Ensembl
RGD
PMID:19776033 PMID:21045211 PMID:23454480 GO_REF:0000107 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISO
ISS
IEA
(PMID:28025795)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:28025795 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:11,536,520...11,579,883
Ensembl chr 8:11,536,520...11,579,761
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2445832|MGI:3522206 (PMID:20047077) RGD PMID:20047077 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
homeostasis of number of cells within a tissue term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add1 adducin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3799499 (PMID:18723693)
Ensembl
RGD
PMID:18723693 GO_REF:0000107 NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182
JBrowse link
G Akt3 AKT serine/threonine kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3574346 (PMID:15713641)
Ensembl
RGD
PMID:15713641 GO_REF:0000107 NCBI chr13:88,943,708...89,225,831
Ensembl chr13:88,946,091...89,225,708
JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857249|MGI:1857429 (PMID:11413548), (PMID:15342910) RGD PMID:11413548 PMID:15342910 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857134|MGI:2158305 (PMID:16427619), (PMID:9241272)
Ensembl
RGD
PMID:9241272 PMID:16427619 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 acts_upstream_of_or_within ISO (PMID:29960053) RGD PMID:29960053 NCBI chr 5:82,348,501...82,550,506
Ensembl chr 5:82,348,930...82,493,150
JBrowse link
G Ccr2 C-C motif chemokine receptor 2 acts_upstream_of_or_within ISO MGI:2158345 (PMID:9342361) RGD PMID:9342361 NCBI chr 8:123,734,465...123,742,483
Ensembl chr 8:123,734,430...123,742,100
JBrowse link
G Cd7 Cd7 molecule acts_upstream_of_or_within ISO MGI:2180804 (PMID:9637484) RGD PMID:9637484 NCBI chr10:106,304,046...106,306,963
Ensembl chr10:106,304,056...106,306,967
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain acts_upstream_of_or_within ISO MGI:3846440 (PMID:22906538) RGD PMID:22906538 NCBI chr 7:86,722,093...86,937,215
Ensembl chr 7:86,722,094...86,937,214
JBrowse link
G Coro1a coronin 1A acts_upstream_of_or_within ISO MGI:3818509 (PMID:18836449) RGD PMID:18836449 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534
JBrowse link
G Csf1 colony stimulating factor 1 acts_upstream_of_or_within ISO MGI:1856333 (PMID:9215625) RGD PMID:9215625 NCBI chr 2:195,377,215...195,396,608
Ensembl chr 2:195,377,215...195,411,704
JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:3038377 (PMID:18305483)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:18305483 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:26,869,343...26,885,856
Ensembl chr 2:26,868,404...26,885,870
JBrowse link
G Fh fumarate hydratase acts_upstream_of_or_within ISO MGI:2665300|MGI:3710112 (PMID:17418408) RGD PMID:17418408 NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:3628823|MGI:96995 (PMID:20457904), (PMID:22674806) RGD PMID:20457904 PMID:22674806 NCBI chr12:7,623,930...7,699,474
Ensembl chr12:7,623,930...7,699,474
JBrowse link
G Flt3lg Fms related receptor tyrosine kinase 3 ligand acts_upstream_of_or_within ISO MGI:97799 (PMID:21048959) RGD PMID:21048959 NCBI chr 1:95,615,056...95,620,463
Ensembl chr 1:95,609,370...95,620,463
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3521818 (PMID:24464219), (PMID:33655757)
Ensembl
RGD
PMID:24464219 PMID:33655757 GO_REF:0000107 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034
JBrowse link
G Gata1 GATA binding protein 1 acts_upstream_of_or_within ISO MGI:95662 (PMID:14504093) RGD PMID:14504093 NCBI chr  X:14,529,706...14,537,530
Ensembl chr  X:14,529,702...14,537,530
JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:1857743|MGI:95661 (PMID:14504093), (PMID:15811962) RGD PMID:14504093 PMID:15811962 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 acts_upstream_of_or_within ISO MGI:4126459 (PMID:19744960) RGD PMID:19744960 NCBI chr 9:88,001,212...88,127,040
Ensembl chr 9:88,001,301...88,125,715
JBrowse link
G Il20rb interleukin 20 receptor subunit beta acts_upstream_of_or_within ISO MGI:3830304 (PMID:19124723) RGD PMID:19124723 NCBI chr 8:100,979,085...101,010,829
Ensembl chr 8:100,980,383...101,009,942
JBrowse link
G Il7 interleukin 7 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857652 (PMID:9252127)
Ensembl
RGD
PMID:9252127 GO_REF:0000107 NCBI chr 2:94,235,219...94,280,075
Ensembl chr 2:94,234,766...94,280,075
JBrowse link
G Ildr2 immunoglobulin-like domain containing receptor 2 acts_upstream_of_or_within ISO MGI:3820395 (PMID:18654634) RGD PMID:18654634 NCBI chr13:78,518,770...78,580,627
Ensembl chr13:78,518,802...78,576,924
JBrowse link
G Klhl10 kelch-like family member 10 acts_upstream_of_or_within ISO MGI:3040869 (PMID:15136734) RGD PMID:15136734 NCBI chr10:85,376,442...85,392,720
Ensembl chr10:85,376,442...85,392,720
JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO MGI:95559 (PMID:22674806) RGD PMID:22674806 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Kras KRAS proto-oncogene, GTPase acts_upstream_of_or_within ISO MGI:99511 (PMID:24675817) RGD PMID:24675817 NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2451080 (PMID:14644759)
Ensembl
RGD
PMID:14644759 GO_REF:0000107 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633
JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802570|MGI:3802571 (PMID:25331604), (PMID:27965439) RGD PMID:25331604 PMID:27965439 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:5501251 (PMID:26019294) RGD PMID:26019294 NCBI chr11:44,782,676...44,810,722
Ensembl chr11:44,782,676...44,810,723
JBrowse link
G Nos3 nitric oxide synthase 3 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q01705 (MGI:6158784|PMID:27107132)
Ensembl
RGD
PMID:27107132 GO_REF:0000107 MGI:6158784 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
JBrowse link
G Notch1 notch receptor 1 involved_in ISO UniProtKB:P70313 (MGI:6158784|PMID:27107132) RGD PMID:27107132 MGI:6158784 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:2386080 (PMID:16969386) RGD PMID:16969386 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Prdm14 PR/SET domain 14 acts_upstream_of_or_within ISO MGI:3805889 (PMID:18622394) RGD PMID:18622394 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
JBrowse link
G Pth parathyroid hormone acts_upstream_of_or_within ISO MGI:95560 (PMID:21048959) RGD PMID:21048959 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3690333|MGI:96680 (PMID:24675817)
Ensembl
RGD
PMID:24675817 GO_REF:0000107 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2180784 (PMID:23258346) RGD PMID:23258346 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Rac3 Rac family small GTPase 3 acts_upstream_of_or_within ISO MGI:97845 (PMID:23258346) RGD PMID:23258346 NCBI chr10:106,002,808...106,005,243
Ensembl chr10:105,993,087...106,005,260
JBrowse link
G Rpa1 replication protein A1 acts_upstream_of_or_within ISO MGI:3582609 (PMID:15965476) RGD PMID:15965476 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of_or_within ISO MGI:3716944 (PMID:16227612) RGD PMID:16227612 NCBI chr  X:127,326,815...127,341,521
Ensembl chr  X:127,326,859...127,341,519
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:23680462)
Ensembl
RGD
PMID:23680462 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2429649 (PMID:24218621) RGD PMID:24218621 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within ISO MGI:3526165 (PMID:18283110) RGD PMID:18283110 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467
JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (PMID:21875651) RGD PMID:21875651 NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048 (PMID:22886301) RGD PMID:22886301 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857091 (PMID:24349357)
MGI:1857091 (PMID:8815872)
Ensembl
RGD
PMID:8815872 PMID:24349357 GO_REF:0000107 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857
JBrowse link
homeostasis of number of retina cells term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:6163746 (PMID:23580486) RGD PMID:23580486 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
inhibition of non-skeletal tissue mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc6 ATP binding cassette subfamily C member 6 involved_in ISO MGI:1351634|MGI:3045236|MGI:3785162|MGI:97370 (PMID:24732453), (PMID:28652107) RGD PMID:24732453 PMID:28652107 NCBI chr 1:96,447,224...96,501,464
Ensembl chr 1:96,447,251...96,501,464
JBrowse link
G Alpl alkaline phosphatase, biomineralization associated involved_in ISO MGI:1856651|MGI:2385534 (PMID:21490328) RGD PMID:21490328 NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
JBrowse link
G Ankh ANKH inorganic pyrophosphate transport regulator involved_in IEA
ISO
GO_REF:0000107
MGI:1856651|MGI:2385534 (PMID:15625282), (PMID:21490328)
Ensembl
RGD
PMID:15625282 PMID:21490328 GO_REF:0000107 NCBI chr 2:78,153,027...78,280,181
Ensembl chr 2:78,153,026...78,280,187
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1351634|MGI:1856651|MGI:2385534|MGI:3045236|MGI:3785162|MGI:97370 (PMID:15625282), (PMID:21490328), (PMID:23798568), (PMID:24732453), (PMID:25644539), (PMID:26624227), (PMID:26763447), (PMID:27959908), (PMID:28402956), (PMID:28652107) RGD PMID:15625282 PMID:21490328 PMID:23798568 PMID:24732453 PMID:25644539 More... NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Nt5e 5' nucleotidase, ecto involved_in IEA
ISO
GO_REF:0000107
(PMID:25644539)
Ensembl
RGD
PMID:25644539 GO_REF:0000107 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
JBrowse link
intestinal epithelial structure maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10ra interleukin 10 receptor subunit alpha involved_in ISO (PMID:29454749) RGD PMID:29454749 NCBI chr 8:45,563,009...45,578,041
Ensembl chr 8:45,563,137...45,578,061
JBrowse link
G Il17a interleukin 17A involved_in IEA
ISO
GO_REF:0000107
(MGI:5788042|PMID:26431948)
Ensembl
RGD
PMID:26431948 GO_REF:0000107 MGI:5788042 NCBI chr 9:23,144,402...23,147,889
Ensembl chr 9:23,144,402...23,147,889
JBrowse link
G Inava innate immunity activator involved_in ISO (MGI:6119883|PMID:29420262) RGD PMID:29420262 MGI:6119883 NCBI chr13:47,666,446...47,687,383
Ensembl chr13:47,666,447...47,686,729
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2429649 (PMID:17681175)
UniProt
RGD
PMID:17681175 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tlr4 toll-like receptor 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:4421230|PMID:20051628)
Ensembl
RGD
PMID:20051628 GO_REF:0000107 MGI:4421230 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Zfp830 zinc finger protein 830 acts_upstream_of_or_within ISO MGI:4950703 (PMID:23213458) RGD PMID:23213458 NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523
JBrowse link
maintenance of blood-brain barrier term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IMP RGD PMID:26830080 RGD:11041002 NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709
JBrowse link
G Bdkrb2 bradykinin receptor B2 IDA RGD PMID:20080302 RGD:4891047 NCBI chr 6:124,472,317...124,502,497
Ensembl chr 6:124,472,566...124,502,497
JBrowse link
G Cd2ap CD2-associated protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2664945 (PMID:26358779)
Ensembl
RGD
PMID:26358779 GO_REF:0000107 NCBI chr 9:18,086,744...18,182,744
Ensembl chr 9:18,086,984...18,182,199
JBrowse link
G Cdc45 cell division cycle 45 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
G Cldn5 claudin 5 involved_in ISO (PMID:28961379) RGD PMID:28961379 NCBI chr11:82,212,822...82,214,248
Ensembl chr11:82,211,475...82,214,992
JBrowse link
G Mbp myelin basic protein involved_in ISO
IEA
(PMID:22524708)
GO_REF:0000107
RGD
Ensembl
PMID:22524708 GO_REF:0000107 NCBI chr18:75,855,878...75,966,404
Ensembl chr18:75,855,878...75,966,404
JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (MGI:6196220|PMID:30074985) RGD PMID:30074985 MGI:6196220 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:21408219) RGD PMID:21408219 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 IMP RGD PMID:17704356 RGD:2325928 NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IMP RGD PMID:17704356 RGD:2325928 NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188
JBrowse link
G Slc12a2 solute carrier family 12 member 2 acts_upstream_of_or_within ISO (MGI:6392927|PMID:28577991) RGD PMID:28577991 MGI:6392927 NCBI chr18:51,348,282...51,416,448
Ensembl chr18:51,348,302...51,416,440
JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within ISO (MGI:6393184|PMID:25350110) RGD PMID:25350110 MGI:6393184 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
JBrowse link
G Tspan12 tetraspanin 12 acts_upstream_of_or_within ISO MGI:6105927 (PMID:30478038) RGD PMID:30478038 NCBI chr 4:50,313,768...50,389,246
Ensembl chr 4:50,313,772...50,389,246
JBrowse link
G Wnk3 WNK lysine deficient protein kinase 3 acts_upstream_of_or_within ISO (MGI:6221361|PMID:27782176) RGD PMID:27782176 MGI:6221361 NCBI chr  X:20,156,260...20,299,252
Ensembl chr  X:20,157,041...20,296,821
JBrowse link
maintenance of gastrointestinal epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cracd capping protein inhibiting regulator of actin dynamics involved_in ISO
IBA
(MGI:6271776|PMID:30361697)
GO_REF:0000033
RGD
GO_Central
PMID:30361697 GO_REF:0000033 MGI:6271776 NCBI chr14:31,284,066...31,520,103
Ensembl chr14:31,284,184...31,522,431
JBrowse link
G Htr4 5-hydroxytryptamine receptor 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:33299969)
Ensembl
RGD
PMID:33299969 GO_REF:0000107 NCBI chr18:55,765,981...55,949,921
Ensembl chr18:55,766,725...55,949,321
JBrowse link
G Muc13 mucin 13, cell surface associated involved_in ISO (PMID:17058067) RGD PMID:17058067 NCBI chr11:66,957,208...66,980,264
Ensembl chr11:66,960,595...66,984,727
JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming involved_in ISO
ISS
(PMID:17058067)
(MGI:6471838|PMID:33093110), (PMID:35337837)
GO_REF:0000024
RGD
UniProt
PMID:17058067 PMID:33093110 PMID:35337837 GO_REF:0000024 MGI:6471838 NCBI chr 1:196,799,494...196,831,740
Ensembl chr 1:196,799,517...196,831,756
JBrowse link
G Muc4 mucin 4, cell surface associated involved_in ISO (PMID:17058067) RGD PMID:17058067 NCBI chr11:68,008,245...68,053,242 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:17058067) RGD PMID:17058067 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Pbld1 phenazine biosynthesis-like protein domain containing 1 involved_in ISO (PMID:17929853) RGD PMID:17929853 NCBI chr20:25,551,274...25,566,543
Ensembl chr20:25,551,275...25,565,614
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO
IEA
(PMID:10944490)
GO_REF:0000107
RGD
Ensembl
PMID:10944490 GO_REF:0000107 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Strap serine/threonine kinase receptor associated protein involved_in ISO (PMID:17929853) RGD PMID:17929853 NCBI chr 4:170,646,042...170,660,291
Ensembl chr 4:170,646,001...170,660,828
JBrowse link
G Tff1 trefoil factor 1 involved_in IEP
IBA
GO_REF:0000033 GO_Central
RGD
PMID:8836141 GO_REF:0000033, RGD:625375 NCBI chr20:9,235,736...9,239,597
Ensembl chr20:9,235,736...9,239,597
JBrowse link
G Tff2 trefoil factor 2 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr20:9,215,750...9,219,619
Ensembl chr20:9,215,761...9,219,619
JBrowse link
G Tff3 trefoil factor 3 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr20:9,193,259...9,197,969
Ensembl chr20:9,193,262...9,198,054
JBrowse link
G Tlr9 toll-like receptor 9 involved_in ISO (MGI:4399015|PMID:17128265) RGD PMID:17128265 MGI:4399015 NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
JBrowse link
G Vsig1 V-set and immunoglobulin domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000002
MGI:5297726 (PMID:21991385)
GO_REF:0000118
GO_REF:0000033
InterPro
RGD
TreeGrafter
GO_Central
PMID:21991385 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:104,607,031...104,640,128
Ensembl chr  X:104,607,031...104,639,249
JBrowse link
maintenance of lens transparency term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in IMP PMID:15623782 UniProt PMID:15623782 RGD:2306321 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Apbb2 amyloid beta precursor protein binding family B member 2 involved_in ISO (MGI:5648704|PMID:25757569) RGD PMID:25757569 MGI:5648704 NCBI chr14:41,557,918...41,878,622
Ensembl chr14:41,557,972...41,877,495
JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17701905) RGD PMID:17701905 NCBI chr 3:143,170,859...143,211,376
Ensembl chr 3:143,170,902...143,210,844
JBrowse link
G Foxc1 forkhead box C1 involved_in ISO (MGI:5314489|PMID:22171010) RGD PMID:22171010 MGI:5314489 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Gcnt2 glucosaminyl (N-acetyl) transferase 2 involved_in ISO (PMID:12424189) RGD PMID:12424189 NCBI chr17:23,796,859...23,901,625
Ensembl chr17:23,796,859...23,901,611
JBrowse link
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming acts_upstream_of_or_within ISO MGI:5295259 (PMID:23272068) RGD PMID:23272068 NCBI chr 1:196,864,336...196,896,475
Ensembl chr 1:196,864,336...196,896,475
JBrowse link
G Stk39 serine threonine kinase 39 involved_in ISO (MGI:5766617|PMID:25515571) RGD PMID:25515571 MGI:5766617 NCBI chr 3:52,913,583...53,179,060
Ensembl chr 3:52,913,585...53,179,060
JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B involved_in ISO (MGI:6455609|PMID:32915983) RGD PMID:32915983 MGI:6455609 NCBI chr 7:66,557,862...67,128,429
Ensembl chr 7:66,558,471...67,128,429
JBrowse link
negative regulation of blood-brain barrier permeability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP binding cassette subfamily C member 8 IMP RGD PMID:18854840 RGD:2325137 NCBI chr 1:96,598,568...96,679,563
Ensembl chr 1:96,598,647...96,679,510
JBrowse link
G Ifnb1 interferon beta 1 IDA RGD PMID:12973019 PMID:12973022 RGD:401851924, RGD:401851925 NCBI chr 5:103,020,758...103,021,595
Ensembl chr 5:103,020,969...103,021,523
JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 involved_in ISO
IEA
(PMID:24854121)
GO_REF:0000107
RGD
Ensembl
PMID:24854121 GO_REF:0000107 NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in ISO
IEA
(PMID:19148554)
GO_REF:0000107
RGD
Ensembl
PMID:19148554 GO_REF:0000107 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
negative regulation of bone resorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calca calcitonin-related polypeptide alpha involved_in ISO (PMID:10822112), (PMID:17241109) RGD PMID:10822112 PMID:17241109 NCBI chr 1:168,878,212...168,883,176
Ensembl chr 1:168,878,214...168,883,105
JBrowse link
G Cartpt CART prepropeptide involved_in ISO (PMID:16614075)
UniProtKB:P56450 (MGI:3696590|PMID:16614075)
RGD PMID:16614075 MGI:3696590 NCBI chr 2:31,255,098...31,257,452
Ensembl chr 2:31,255,098...31,290,713
JBrowse link
G Cd38 CD38 molecule IDA RGD PMID:10477767 RGD:2307268 NCBI chr14:67,172,062...67,212,328
Ensembl chr14:67,172,063...67,211,986
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:5560663 (PMID:25490771) RGD PMID:25490771 NCBI chr 1:81,043,595...81,060,050
Ensembl chr 1:81,043,595...81,059,992
JBrowse link
G Cldn18 claudin 18 acts_upstream_of_or_within ISO MGI:5007067 (PMID:22437732) RGD PMID:22437732 NCBI chr 8:100,246,499...100,265,797
Ensembl chr 8:100,247,633...100,273,351
JBrowse link
G Csk C-terminal Src kinase IDA RGD PMID:10411542 RGD:5134371 NCBI chr 8:58,029,748...58,048,742
Ensembl chr 8:58,029,749...58,048,292
JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IMP RGD PMID:8694895 RGD:7257714 NCBI chr 8:54,552,978...54,580,375
Ensembl chr 8:54,553,165...54,580,758
JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (PMID:11089565), (PMID:17332067) RGD PMID:11089565 PMID:17332067 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785
JBrowse link
G Gpr137 G protein-coupled receptor 137 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:204,129,636...204,132,622
Ensembl chr 1:204,129,636...204,133,082
JBrowse link
G Gpr137b G protein-coupled receptor 137B involved_in ISO
IBA
(MGI:6362357|PMID:31173907)
GO_REF:0000033
RGD
GO_Central
PMID:31173907 GO_REF:0000033 MGI:6362357 NCBI chr17:86,003,635...86,041,841
Ensembl chr17:85,966,921...86,041,835
JBrowse link
G Hamp hepcidin antimicrobial peptide acts_upstream_of_or_within ISO MGI:4351741 (PMID:24561287) RGD PMID:24561287 NCBI chr 1:86,170,926...86,172,865
Ensembl chr 1:86,170,901...86,172,891
JBrowse link
G Iapp islet amyloid polypeptide acts_upstream_of_or_within ISO MGI:2656235 (PMID:14970190) RGD PMID:14970190 NCBI chr 4:175,237,107...175,244,373
Ensembl chr 4:175,237,115...175,242,920
JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:5795829|PMID:11159963) RGD PMID:11159963 MGI:5795829 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Inpp5d inositol polyphosphate-5-phosphatase D involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:2386884 (PMID:12161749)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:12161749 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:88,287,680...88,392,748
Ensembl chr 9:88,287,677...88,392,746
JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:2386080 (PMID:12677010) RGD PMID:12677010 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
JBrowse link
G Sh2d1b2 SH2 domain containing 1B2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr13:82,437,418...82,461,511
Ensembl chr13:82,437,428...82,461,509
JBrowse link
G Tmem119 transmembrane protein 119 involved_in ISO (MGI:5543589|PMID:22416756) RGD PMID:22416756 MGI:5543589 NCBI chr12:42,828,621...42,835,678
Ensembl chr12:42,828,418...42,835,689
JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11B IMP
IDA
RGD PMID:11839361 PMID:16912914 RGD:730196, RGD:1624170 NCBI chr 7:85,566,520...85,594,526
Ensembl chr 7:85,566,520...85,594,538
JBrowse link
G Ubash3b ubiquitin associated and SH3 domain containing, B involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:23149425)
GO_Central
RGD
PMID:23149425 GO_REF:0000033 NCBI chr 8:41,385,419...41,532,248
Ensembl chr 8:41,388,341...41,532,201
JBrowse link
G Vegfa vascular endothelial growth factor A IMP RGD PMID:15312247 RGD:1580559 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
photoreceptor cell maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 acts_upstream_of_or_within ISO MGI:1857860 (PMID:11431429) RGD PMID:11431429 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 involved_in ISO (PMID:14740321) RGD PMID:14740321 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:69165|PMID:7525597)
Ensembl
RGD
PMID:7525597 GO_REF:0000107 MGI:69165 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 involved_in ISO (PMID:17980398) RGD PMID:17980398 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086
JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 involved_in ISO (PMID:17980398) RGD PMID:17980398 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141
JBrowse link
G Bbs12 Bardet-Biedl syndrome 12 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5444297 (PMID:22869374), (PMID:22958920)
GO_Central
RGD
PMID:22869374 PMID:22958920 GO_REF:0000033 NCBI chr 2:120,203,396...120,221,024
Ensembl chr 2:120,203,428...120,219,255
JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (PMID:15539463) RGD PMID:15539463 NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:2384917|MGI:3045473|MGI:3055492 (PMID:16794820), (PMID:17591906), (PMID:20398886), (PMID:21444805), (PMID:23943788) RGD PMID:16794820 PMID:17591906 PMID:20398886 PMID:21444805 PMID:23943788 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Bsg basigin (Ok blood group) involved_in ISO
ISS
(PMID:25957687)
(MGI:6436439|PMID:25957687)
GO_REF:0000024
RGD
UniProt
PMID:25957687 GO_REF:0000024 MGI:6436439 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
JBrowse link
G Cdh23 cadherin-related 23 involved_in ISO
IEA
(PMID:16679490)
GO_REF:0000107
RGD
Ensembl
PMID:16679490 GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Cdhr1 cadherin-related family member 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:20805371)
MGI:3046299 (PMID:11738025)
GO_REF:0000107
RGD
Ensembl
PMID:11738025 PMID:20805371 GO_REF:0000107 NCBI chr16:12,843,436...12,863,321
Ensembl chr16:12,843,437...12,863,396
JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO MGI:2143311|MGI:3624136 (PMID:23943788) RGD PMID:23943788 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Cib2 calcium and integrin binding family member 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5487486|PMID:23023331)
UniProt
RGD
PMID:23023331 GO_REF:0000024 MGI:5487486 NCBI chr 8:54,930,265...54,947,157 JBrowse link
G Clcn3 chloride voltage-gated channel 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2183297 (PMID:11182090)
Ensembl
RGD
PMID:11182090 GO_REF:0000107 NCBI chr16:29,127,152...29,200,133
Ensembl chr16:29,127,419...29,200,119
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (PMID:15565184), (PMID:9151333) RGD PMID:9151333 PMID:15565184 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
JBrowse link
G Clrn1 clarin 1 involved_in ISO
IEA
(PMID:15521980)
GO_REF:0000107
RGD
Ensembl
PMID:15521980 GO_REF:0000107 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3527896 (PMID:15634774) RGD PMID:15634774 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:17234588), (PMID:25147295) RGD PMID:17234588 PMID:25147295 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) RGD PMID:23001562 MGI:5461109 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
JBrowse link
G Crocc ciliary rootlet coiled-coil, rootletin acts_upstream_of_or_within ISO MGI:3580447 (PMID:15870283) RGD PMID:15870283 NCBI chr 5:153,320,962...153,363,734
Ensembl chr 5:153,320,962...153,363,578
JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
ISS
(PMID:25983245)
(PMID:37691820)
GO_REF:0000033
GO_REF:0000118
(MGI:5705208|PMID:25983245)
GO_REF:0000024
RGD
GO_Central
TreeGrafter
UniProt
PMID:25983245 PMID:37691820 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:5705208 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102 (PMID:17145777) RGD PMID:17145777 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO
GO_REF:0000024
(MGI:4457950|PMID:20534447)
UniProt
RGD
PMID:20534447 GO_REF:0000024 MGI:4457950 NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Iqcb1 IQ motif containing B1 involved_in ISO (PMID:15723066) RGD PMID:15723066 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093
JBrowse link
G Lca5 lebercilin LCA5 acts_upstream_of_or_within ISS
ISO
GO_REF:0000024
(PMID:21606596)
UniProt
RGD
PMID:21606596 GO_REF:0000024 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956
JBrowse link
G Mak male germ cell-associated kinase involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:2179972 (PMID:21148103)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21148103 GO_REF:0000024 GO_REF:0000107 NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001
JBrowse link
G Map1a microtubule-associated protein 1A acts_upstream_of_or_within ISO MGI:109571|MGI:2651573 (PMID:22323461) RGD PMID:22323461 NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899
JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444|MGI:3608879 (PMID:15772095), (PMID:16170314) RGD PMID:15772095 PMID:16170314 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162
JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:12872122) RGD PMID:12872122 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383
JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO MGI:3032515 (PMID:21078623) RGD PMID:21078623 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Nxnl1 nucleoredoxin-like 1 involved_in ISO (PMID:25957687)
(MGI:6436439|PMID:25957687)
RGD PMID:25957687 MGI:6436439 NCBI chr16:18,270,604...18,279,797
Ensembl chr16:18,262,688...18,279,987
JBrowse link
G Nxnl2 nucleoredoxin-like 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:14,031,151...14,035,897
Ensembl chr17:14,031,153...14,036,189
JBrowse link
G Pcdh15 protocadherin related 15 involved_in ISO (PMID:11398101) RGD PMID:11398101 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pde6a phosphodiesterase 6A acts_upstream_of_or_within ISO MGI:4867884 (PMID:22183357) RGD PMID:22183357 NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816
JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA
(PMID:18654668)
GO_REF:0000033
RGD
GO_Central
PMID:18654668 GO_REF:0000033 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5609882 (PMID:22183357)
(MGI:6508517|PMID:32312889)
Ensembl
RGD
PMID:22183357 PMID:32312889 GO_REF:0000107 MGI:6508517 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO (MGI:3604930|PMID:16126734) RGD PMID:16126734 MGI:3604930 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rp1l1 RP1 like 1 involved_in ISO (PMID:23281133)
(MGI:4353917|PMID:19657028)
RGD PMID:19657028 PMID:23281133 MGI:4353917 NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316
JBrowse link
G Slc2a1 solute carrier family 2 member 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416
JBrowse link
G Spata7 spermatogenesis associated 7 involved_in IEA
IBA
ISS
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(MGI:5608598|PMID:25398945)
Ensembl
GO_Central
TreeGrafter
UniProt
RGD
PMID:25398945 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5608598 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
JBrowse link
G Tub TUB bipartite transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857081 (PMID:10629044)
Ensembl
RGD
PMID:10629044 GO_REF:0000107 NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812
JBrowse link
G Tulp1 TUB like protein 1 involved_in
acts_upstream_of_or_within
ISO (MGI:4397555|PMID:19218615)
MGI:1857081|MGI:1859921|MGI:4867883 (PMID:10549638), (PMID:10607826), (PMID:17525220), (PMID:22183357)
RGD PMID:10549638 PMID:10607826 PMID:17525220 PMID:19218615 PMID:22183357 MGI:4397555 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073
JBrowse link
G Ush1c USH1 protein network component harmonin involved_in ISO (PMID:11398101) RGD PMID:11398101 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush1g USH1 protein network component sans involved_in ISO (PMID:11398101) RGD PMID:11398101 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
JBrowse link
G Ush2a usherin involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:10090909)
MGI:3702040 (PMID:17360538)
GO_REF:0000107
RGD
Ensembl
PMID:10090909 PMID:17360538 GO_REF:0000107 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G Usp45 ubiquitin specific peptidase 45 involved_in ISO (MGI:6383248|PMID:30573563) RGD PMID:30573563 MGI:6383248 NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420
JBrowse link
positive regulation of blood-brain barrier permeability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:19148554)
Ensembl
RGD
PMID:19148554 GO_REF:0000107 NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067
JBrowse link
G Ocln occludin involved_in ISO (PMID:24854121) RGD PMID:24854121 NCBI chr 2:31,657,217...31,707,466
Ensembl chr 2:31,657,220...31,764,150
JBrowse link
G Tjp1 tight junction protein 1 involved_in ISO
IBA
IEA
(PMID:24854121)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:24854121 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:118,849,838...119,094,492
Ensembl chr 1:118,849,838...119,094,432
JBrowse link
G Tjp2 tight junction protein 2 involved_in ISO
IBA
(PMID:19148554)
GO_REF:0000033
RGD
GO_Central
PMID:19148554 GO_REF:0000033 NCBI chr 1:221,709,745...221,838,291
Ensembl chr 1:221,709,745...221,838,295
JBrowse link
G Tjp3 tight junction protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,427,650...8,446,279
Ensembl chr 7:8,432,811...8,446,279
JBrowse link
positive regulation of bone resorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002627.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:76,911,602...76,914,024 JBrowse link
G Adam8 ADAM metallopeptidase domain 8 involved_in ISO (MGI:5009189|PMID:11341326), (MGI:5009349|PMID:20683884) RGD PMID:11341326 PMID:20683884 MGI:5009189 MGI:5009349 NCBI chr 1:194,776,559...194,789,330
Ensembl chr 1:194,770,060...194,788,801
JBrowse link
G Ahsg alpha-2-HS-glycoprotein IMP RGD PMID:10500999 RGD:1625797 NCBI chr11:78,121,388...78,127,998
Ensembl chr11:78,117,918...78,145,999
JBrowse link
G Car2 carbonic anhydrase 2 IMP RGD PMID:8674544 RGD:1600722 NCBI chr 2:86,741,625...86,756,766
Ensembl chr 2:86,741,626...86,756,818
JBrowse link
G Dcstamp dendrocyte expressed seven transmembrane protein involved_in ISO (MGI:3588832|PMID:16061724), (MGI:5426134|PMID:17164993), (MGI:5426135|PMID:16937266) RGD PMID:16061724 PMID:16937266 PMID:17164993 MGI:3588832 MGI:5426134 MGI:5426135 NCBI chr 7:70,807,455...70,822,067
Ensembl chr 7:70,807,581...70,822,078
JBrowse link
G Def8 differentially expressed in FDCP 8 homolog involved_in ISS
ISO
GO_REF:0000024
(MGI:5806241|PMID:27777970)
UniProt
RGD
PMID:27777970 GO_REF:0000024 MGI:5806241 NCBI chr19:51,474,783...51,495,638
Ensembl chr19:51,474,878...51,495,638
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:3526402 (PMID:21308776) RGD PMID:21308776 NCBI chr 6:128,410,216...128,417,518
Ensembl chr 6:128,410,316...128,417,522
JBrowse link
G Egfr epidermal growth factor receptor IMP RGD PMID:2981075 RGD:10395245 NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Fcgr3a Fc gamma receptor 3A involved_in ISO (MGI:5641770|PMID:25824719) RGD PMID:25824719 MGI:5641770 NCBI chr13:83,249,905...83,259,921
Ensembl chr13:83,249,872...83,259,921
JBrowse link
G Fshb follicle stimulating hormone subunit beta acts_upstream_of_or_within ISO MGI:1857434 (PMID:16630814) RGD PMID:16630814 NCBI chr 3:93,548,560...93,552,370
Ensembl chr 3:93,548,560...93,552,370
JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:19834056) RGD PMID:19834056 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522
JBrowse link
G Itgb3 integrin subunit beta 3 IMP RGD PMID:8603604 RGD:5024929 NCBI chr10:89,509,917...89,564,679
Ensembl chr10:89,509,989...89,564,679
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982 (PMID:18505367) RGD PMID:18505367 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO MGI:2180017 (PMID:15878314) RGD PMID:15878314 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975
JBrowse link
G Mc4r melanocortin 4 receptor involved_in ISO (PMID:16614075)
(MGI:3696590|PMID:16614075)
RGD PMID:16614075 MGI:3696590 NCBI chr18:60,419,832...60,421,719
Ensembl chr18:60,419,832...60,421,719
JBrowse link
G Oscar osteoclast associated Ig-like receptor acts_upstream_of_or_within ISO (PMID:11805147) RGD PMID:11805147 NCBI chr 1:65,607,214...65,615,395
Ensembl chr 1:65,607,410...65,613,758
JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5806241|PMID:27777970)
UniProt
RGD
PMID:27777970 GO_REF:0000024 MGI:5806241 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412
JBrowse link
G Ppargc1b PPARG coactivator 1 beta involved_in ISO
IEA
(MGI:3838421|PMID:19252502)
GO_REF:0000107
RGD
Ensembl
PMID:19252502 GO_REF:0000107 MGI:3838421 NCBI chr18:54,758,891...54,861,103
Ensembl chr18:54,758,902...54,861,194
JBrowse link
G Prkca protein kinase C, alpha involved_in ISO (MGI:5284791|PMID:16014375) RGD PMID:16014375 MGI:5284791 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:11792579 RGD:729815 NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670
JBrowse link
G Spp1 secreted phosphoprotein 1 involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
RGD
PMID:11792563 GO_REF:0000033 GO_REF:0000118, RGD:1581129 NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase IMP RGD PMID:8514886 RGD:150524326 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3703840|PMID:17353363)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17353363 GO_REF:0000024 GO_REF:0000107 MGI:3703840 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410
JBrowse link
G Tf transferrin involved_in ISO (MGI:3838421|PMID:19252502) RGD PMID:19252502 MGI:3838421 NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511
JBrowse link
G Tfrc transferrin receptor involved_in ISO (MGI:3838421|PMID:19252502) RGD PMID:19252502 MGI:3838421 NCBI chr11:68,163,413...68,185,257
Ensembl chr11:68,163,413...68,185,257
JBrowse link
G Tmem64 transmembrane protein 64 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:3880885 (PMID:23395171)
GO_Central
RGD
PMID:23395171 GO_REF:0000033 NCBI chr 5:28,698,947...28,745,384
Ensembl chr 5:28,698,918...28,745,330
JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:11805147)
GO_Central
RGD
PMID:11805147 GO_REF:0000033 NCBI chr13:21,928,370...21,986,719
Ensembl chr13:21,928,408...21,986,695
JBrowse link
G Tnfsf11 TNF superfamily member 11 involved_in IMP
IEA
ISO
GO_REF:0000107
(PMID:17241109)
Ensembl
RGD
PMID:17241109 PMID:11092398 GO_REF:0000107, RGD:730134 NCBI chr15:53,673,850...53,705,325
Ensembl chr15:53,673,877...53,705,445
JBrowse link
positive regulation of intestinal epithelial structure maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc22a5 solute carrier family 22 member 5 involved_in ISO (PMID:18005709) RGD PMID:18005709 NCBI chr10:38,008,303...38,035,474
Ensembl chr10:38,008,311...38,035,309
JBrowse link
regulation of apoptosis involved in tissue homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdx5 peroxiredoxin 5 involved_in ISO (PMID:15276323) RGD PMID:15276323 NCBI chr 1:204,099,826...204,103,589
Ensembl chr 1:204,099,826...204,114,268
JBrowse link
G Xiap X-linked inhibitor of apoptosis involved_in ISO
IEA
(MGI:6268242|PMID:30389919)
GO_REF:0000107
RGD
Ensembl
PMID:30389919 GO_REF:0000107 MGI:6268242 NCBI chr  X:120,890,537...120,938,413
Ensembl chr  X:120,897,907...120,934,700
JBrowse link
regulation of blood-brain barrier permeability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zeb2 zinc finger E-box binding homeobox 2 IMP RGD PMID:34334113 RGD:155882538 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
regulation of bone resorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calcr calcitonin receptor NOT|acts_upstream_of_or_within ISO MGI:3038975 (PMID:14970190) RGD PMID:14970190 NCBI chr 4:31,661,270...31,736,392
Ensembl chr 4:31,661,273...31,736,392
JBrowse link
G Car2 carbonic anhydrase 2 TAS RGD PMID:9665810 RGD:1342423 NCBI chr 2:86,741,625...86,756,766
Ensembl chr 2:86,741,626...86,756,818
JBrowse link
G Csf1r colony stimulating factor 1 receptor involved_in IMP PMID:17121910 UniProt PMID:17121910 RGD:2293713 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415
JBrowse link
G Il20ra interleukin 20 receptor subunit alpha acts_upstream_of_or_within ISO MGI:5302406 (PMID:21844205) RGD PMID:21844205 NCBI chr 1:14,424,215...14,494,226
Ensembl chr 1:14,451,228...14,493,602
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1857478 (PMID:17053831)
GO_REF:0000107
HGNC-UCL
RGD
Ensembl
PMID:17053831 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 involved_in ISO
IEA
(MGI:5303050|PMID:21803180)
GO_REF:0000107
RGD
Ensembl
PMID:21803180 GO_REF:0000107 MGI:5303050 NCBI chr 4:33,591,796...33,601,798
Ensembl chr 4:33,589,799...33,601,850
JBrowse link
G S1pr1 sphingosine-1-phosphate receptor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3839226|PMID:19204730)
UniProt
RGD
PMID:19204730 GO_REF:0000024 MGI:3839226 NCBI chr 2:203,624,752...203,629,110
Ensembl chr 2:203,621,587...203,629,681
JBrowse link
G Siglec15 sialic acid binding Ig-like lectin 15 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:22451653)
GO_Central
RGD
PMID:22451653 GO_REF:0000033 NCBI chr18:71,506,416...71,521,894
Ensembl chr18:71,505,399...71,521,881
JBrowse link
G Slc4a2 solute carrier family 4 member 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5469753|PMID:23341620)
UniProt
RGD
PMID:23341620 GO_REF:0000024 MGI:5469753 NCBI chr 4:10,736,419...10,754,407
Ensembl chr 4:10,736,425...10,752,965
JBrowse link
regulation of cell proliferation involved in tissue homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2385468|MGI:3053819 (PMID:17698607)
UniProt
RGD
PMID:17698607 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
regulation of intestinal epithelial structure maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5009210|PMID:9512516)
UniProt
RGD
PMID:9512516 GO_REF:0000024 MGI:5009210 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
retina blood vessel maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:28575130) RGD PMID:28575130 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934
JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO MGI:6393534 (PMID:31698979) RGD PMID:31698979 NCBI chr16:8,120,336...8,200,272
Ensembl chr16:8,120,336...8,200,269
JBrowse link
retina homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784|MGI:3054793 (PMID:15365173), (PMID:15365178) RGD PMID:15365173 PMID:15365178 NCBI chr10:56,655,693...56,664,922
Ensembl chr10:56,655,693...56,664,922
JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 acts_upstream_of_or_within ISO (MGI:2159503|PMID:8793730) RGD PMID:8793730 MGI:2159503 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3055491 (PMID:15322545) RGD PMID:15322545 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473|MGI:3055492 (PMID:15173597), (PMID:15322545) RGD PMID:15173597 PMID:15322545 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Ccdc66 coiled-coil domain containing 66 involved_in ISO (PMID:19777273) RGD PMID:19777273 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
JBrowse link
G Cdh3 cadherin 3 involved_in ISO (PMID:23143461) RGD PMID:23143461 NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 involved_in ISO
IBA
(PMID:15557452)
GO_REF:0000033
RGD
GO_Central
PMID:15557452 GO_REF:0000033 NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) RGD PMID:23001562 MGI:5461109 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
JBrowse link
G LOC120101643 sodium/nucleoside cotransporter 2-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:109,505,640...109,535,183
Ensembl chr 3:109,505,663...109,535,168
JBrowse link
G LOC120101644 sodium/nucleoside cotransporter 2-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:109,577,556...109,593,992
Ensembl chr 3:109,577,849...109,593,380
JBrowse link
G Poc1b POC1 centriolar protein B involved_in IEA
ISO
GO_REF:0000107
(PMID:25044745)
Ensembl
RGD
PMID:25044745 GO_REF:0000107 NCBI chr 7:33,924,112...34,025,908
Ensembl chr 7:33,924,189...34,025,903
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Slc28a2 solute carrier family 28 member 2 involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
RGD
PMID:16487924 GO_REF:0000033 GO_REF:0000118, RGD:2317453 NCBI chr 3:109,324,815...109,387,702
Ensembl chr 3:109,366,996...109,387,702
JBrowse link
G Slc28a3 solute carrier family 28 member 3 IDA RGD PMID:16487924 RGD:2317453 NCBI chr17:6,062,563...6,112,965
Ensembl chr17:6,062,549...6,114,038
JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857873 (PMID:16844785)
UniProt
RGD
PMID:16844785 GO_REF:0000024 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (PMID:15557452) RGD PMID:15557452 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073
JBrowse link
G Wdr36 WD repeat domain 36 acts_upstream_of_or_within ISO (PMID:20631153) RGD PMID:20631153 NCBI chr18:24,473,657...24,501,773
Ensembl chr18:24,473,663...24,508,092
JBrowse link
G Whrn whirlin involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4454934|PMID:20502675)
(PMID:17171570)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17171570 PMID:20502675 GO_REF:0000024 GO_REF:0000107 MGI:4454934 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
tissue homeostasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaca acetyl-CoA carboxylase alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3700954|MGI:3700955 (PMID:17210641)
Ensembl
RGD
PMID:17210641 GO_REF:0000107 NCBI chr10:69,014,261...69,276,453
Ensembl chr10:69,014,170...69,276,457
JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B1 IMP lens opacification RGD PMID:21376710 RGD:8548687 NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157
JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO MGI:3797584 (PMID:17986521) RGD PMID:17986521 NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962
JBrowse link
G Ascl3 achaete-scute family bHLH transcription factor 3 involved_in ISO (MGI:5050445|PMID:21377457) RGD PMID:21377457 MGI:5050445 NCBI chr 1:163,755,306...163,755,951
Ensembl chr 1:163,754,956...163,759,682
JBrowse link
G Bap1 Brca1 associated protein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:5439652 (PMID:22878500)
Ensembl
RGD
PMID:22878500 GO_REF:0000107 NCBI chr16:6,446,709...6,455,535
Ensembl chr16:6,446,709...6,455,535
JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO MGI:4949916 (PMID:23839921) RGD PMID:23839921 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
JBrowse link
G Cd34 CD34 molecule involved_in ISO
ISS
(PMID:12939361)
GO_REF:0000024
RGD
UniProt
PMID:12939361 GO_REF:0000024 NCBI chr13:106,480,313...106,500,844
Ensembl chr13:106,480,043...106,499,832
JBrowse link
G Col11a2 collagen type XI alpha 2 chain acts_upstream_of_or_within ISO MGI:2154689 (PMID:11237662) RGD PMID:11237662 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2152978 (PMID:11237662)
Ensembl
RGD
PMID:11237662 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:29551664) RGD PMID:29551664 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964 (PMID:8197187) RGD PMID:8197187 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO MGI:1858008 (PMID:18635608) RGD PMID:18635608 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3769404 (PMID:19439667)
Ensembl
RGD
PMID:19439667 GO_REF:0000107 NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282
JBrowse link
G Gnas GNAS complex locus involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4459474 (PMID:20427744)
Ensembl
RGD
PMID:20427744 GO_REF:0000107 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262
JBrowse link
G Hoxa13 homeo box A13 acts_upstream_of_or_within ISO MGI:2152356 (PMID:18483557) RGD PMID:18483557 NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091
JBrowse link
G Itgb1 integrin subunit beta 1 IMP RGD PMID:17118629 RGD:1625131 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Kcnj1 potassium inwardly-rectifying channel, subfamily J, member 1 acts_upstream_of_or_within ISO MGI:2388372 (PMID:12122007) RGD PMID:12122007 NCBI chr 8:30,779,883...30,808,607
Ensembl chr 8:30,753,617...30,813,796
JBrowse link
G Mir140 microRNA 140 acts_upstream_of_or_within ISO MGI:4461000 (PMID:20466812) RGD PMID:20466812 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675
JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 acts_upstream_of_or_within ISO MGI:97874 (PMID:25100735) RGD PMID:25100735 NCBI chr 1:259,897,663...259,901,561
Ensembl chr 1:259,897,939...259,898,730
JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO MGI:5052268 (PMID:32393888) RGD PMID:32393888 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479
JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:32393888) RGD PMID:32393888 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta acts_upstream_of_or_within ISO MGI:2135508 (PMID:17143286) RGD PMID:17143286 NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843
JBrowse link
G Perp p53 apoptosis effector related to PMP22 involved_in ISO (MGI:6765017|PMID:22515648) RGD PMID:22515648 MGI:6765017 NCBI chr 1:13,542,067...13,554,514
Ensembl chr 1:13,542,067...13,554,511
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:5645931 (PMID:29450535)
Ensembl
RGD
PMID:29450535 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
JBrowse link
G Prlh prolactin releasing hormone acts_upstream_of_or_within ISO MGI:3832409 (PMID:19033670) RGD PMID:19033670 NCBI chr 9:91,543,128...91,549,022
Ensembl chr 9:91,547,901...91,548,818
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2669254 (PMID:25100735)
Ensembl
RGD
PMID:25100735 GO_REF:0000107 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:4413438 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:4947506|PMID:20056916)
UniProt
RGD
PMID:20056916 GO_REF:0000024 MGI:4947506 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Stk11 serine/threonine kinase 11 acts_upstream_of_or_within ISO MGI:3579498 (PMID:18381428) RGD PMID:18381428 NCBI chr 7:9,574,553...9,591,315
Ensembl chr 7:9,575,269...9,591,315
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1931135|MGI:5637673 (PMID:24713655)
Ensembl
RGD
PMID:24713655 GO_REF:0000107 NCBI chr 3:143,881,427...143,890,104
Ensembl chr 3:143,882,021...143,890,097
JBrowse link
G Trim32 tripartite motif-containing 32 acts_upstream_of_or_within ISO MGI:3837468 (PMID:19155210) RGD PMID:19155210 NCBI chr 5:79,005,139...79,016,615
Ensembl chr 5:78,999,389...79,022,018
JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 involved_in ISO (MGI:5509071|PMID:23918388) RGD PMID:23918388 MGI:5509071 NCBI chr 2:141,651,159...141,766,919
Ensembl chr 2:141,648,108...141,766,968
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO
IEA
(MGI:5509071|PMID:23918388)
GO_REF:0000107
RGD
Ensembl
PMID:23918388 GO_REF:0000107 MGI:5509071 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    homeostatic process 1969
      multicellular organismal-level homeostasis 943
        anatomical structure homeostasis 287
          germ-line stem-cell niche homeostasis 0
          tissue homeostasis + 286
paths to the root