Adgrv1 (adhesion G protein-coupled receptor V1) - Rat Genome Database

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Gene: Adgrv1 (adhesion G protein-coupled receptor V1) Rattus norvegicus
Analyze
Symbol: Adgrv1
Name: adhesion G protein-coupled receptor V1
RGD ID: 1562101
Description: Predicted to enable several functions, including G-protein alpha-subunit binding activity; adenylate cyclase inhibitor activity; and calcium ion binding activity. Predicted to be involved in several processes, including negative regulation of adenylate cyclase activity; photoreceptor cell maintenance; and positive regulation of protein kinase C signaling. Predicted to act upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; inner ear receptor cell stereocilium organization; and positive regulation of protein kinase A signaling. Located in stereocilium and synapse. Human ortholog(s) of this gene implicated in Usher syndrome type 2C and familial febrile seizures 4. Orthologous to human ADGRV1 (adhesion G protein-coupled receptor V1); PARTICIPATES IN auditory mechanotransduction pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adhesion G-protein coupled receptor V1; G protein-coupled receptor 98; G-protein coupled receptor 98; Gpr98; LOC294614; LOC362068; LOC685383; neurepin; RGD1562101; similar to monogenic, audiogenic seizure susceptibility 1; similar to very large G-protein coupled receptor 1; very large G protein-coupled receptor 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2211,331,434 - 11,911,713 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl211,331,442 - 11,911,688 (-)Ensembl
Rnor_6.028,926,843 - 9,504,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl28,926,850 - 9,504,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.028,807,139 - 9,384,148 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.428,851,539 - 8,915,885 (-)NCBIRGSC3.4rn4RGSC3.4
Celera27,694,132 - 8,271,980 (-)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Scaffold protein harmonin (USH1C) provides molecular links between Usher syndrome type 1 and type 2. Reiners J, etal., Hum Mol Genet. 2005 Dec 15;14(24):3933-43. Epub 2005 Nov 21.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Review series: The cell biology of hearing. Schwander M, etal., J Cell Biol. 2010 Jul 12;190(1):9-20. doi: 10.1083/jcb.201001138.
Additional References at PubMed
PMID:10976914   PMID:11545713   PMID:12402266   PMID:14740321   PMID:15671307   PMID:15820310   PMID:16137990   PMID:16434480   PMID:16775142   PMID:17295842   PMID:17329413   PMID:17567809  
PMID:17906286   PMID:19056867   PMID:19539720   PMID:20502675   PMID:21212183   PMID:22419726   PMID:23382219   PMID:24191038   PMID:24334608   PMID:24962568   PMID:25406310   PMID:26754646  


Genomics

Comparative Map Data
Adgrv1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2211,331,434 - 11,911,713 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl211,331,442 - 11,911,688 (-)Ensembl
Rnor_6.028,926,843 - 9,504,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl28,926,850 - 9,504,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.028,807,139 - 9,384,148 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.428,851,539 - 8,915,885 (-)NCBIRGSC3.4rn4RGSC3.4
Celera27,694,132 - 8,271,980 (-)NCBICelera
Cytogenetic Map2q11NCBI
ADGRV1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38590,558,797 - 91,164,437 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl590,529,344 - 91,164,437 (+)EnsemblGRCh38hg38GRCh38
GRCh37589,854,614 - 90,460,254 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36589,890,373 - 90,495,789 (+)NCBINCBI36hg18NCBI36
Build 34589,890,372 - 90,495,788NCBI
Celera585,756,769 - 86,361,875 (+)NCBI
Cytogenetic Map5q14.3NCBI
HuRef585,065,303 - 85,671,984 (+)NCBIHuRef
CHM1_1589,287,285 - 89,892,836 (+)NCBICHM1_1
T2T-CHM13v2.0591,045,409 - 91,650,939 (+)NCBI
Adgrv1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391381,243,187 - 81,781,504 (-)NCBIGRCm39mm39
GRCm39 Ensembl1381,243,187 - 81,781,273 (-)Ensembl
GRCm381381,095,068 - 81,633,391 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1381,095,068 - 81,633,154 (-)EnsemblGRCm38mm10GRCm38
MGSCv371381,234,067 - 81,772,143 (-)NCBIGRCm37mm9NCBIm37
MGSCv361381,558,504 - 82,110,481 (-)NCBImm8
Celera1383,360,220 - 83,894,065 (-)NCBICelera
Cytogenetic Map13C2- C3NCBI
cM Map1342.18NCBI
Adgrv1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541820,603,323 - 21,039,891 (-)NCBIChiLan1.0ChiLan1.0
ADGRV1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1524,341,808 - 24,945,477 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl524,341,808 - 24,945,477 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0524,208,844 - 24,811,284 (-)NCBIMhudiblu_PPA_v0panPan3
ADGRV1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1317,866,459 - 18,351,532 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl317,866,808 - 18,351,532 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha319,235,603 - 19,752,086 (-)NCBI
ROS_Cfam_1.0317,771,680 - 18,290,892 (-)NCBI
ROS_Cfam_1.0 Ensembl317,772,024 - 18,290,903 (-)Ensembl
UMICH_Zoey_3.1317,744,458 - 18,264,530 (-)NCBI
UNSW_CanFamBas_1.0317,712,784 - 18,230,146 (-)NCBI
UU_Cfam_GSD_1.0318,000,209 - 18,518,789 (-)NCBI
Adgrv1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213173,415,524 - 173,972,750 (-)NCBI
SpeTri2.0NW_0049364698,653,031 - 9,209,840 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRV1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl297,735,053 - 98,275,748 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1297,703,648 - 98,277,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22100,813,144 - 100,957,443 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADGRV1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1484,498,630 - 85,082,813 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl484,498,573 - 85,083,504 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604933,558,202 - 34,144,188 (+)NCBIVero_WHO_p1.0
Adgrv1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247439,849,070 - 10,292,392 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D2Rat1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,852,062 - 11,852,238 (+)MAPPERmRatBN7.2
Rnor_6.029,444,679 - 9,444,852NCBIRnor6.0
Rnor_5.029,324,722 - 9,324,895UniSTSRnor5.0
RGSC_v3.429,670,332 - 9,670,680RGDRGSC3.4
RGSC_v3.429,670,413 - 9,670,586UniSTSRGSC3.4
RGSC_v3.129,594,136 - 9,594,484RGD
Celera28,212,273 - 8,212,446UniSTS
RH 2.0 Map20.0RGD
SHRSP x BN Map20.0299RGD
FHH x ACI Map20.0899RGD
Cytogenetic Map2q11UniSTS
D2Rat368  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,856,284 - 11,856,483 (+)MAPPERmRatBN7.2
Rnor_6.029,448,899 - 9,449,097NCBIRnor6.0
Rnor_5.029,328,942 - 9,329,140UniSTSRnor5.0
RGSC_v3.429,674,632 - 9,674,831RGDRGSC3.4
RGSC_v3.429,674,633 - 9,674,831UniSTSRGSC3.4
RGSC_v3.129,598,436 - 9,598,635RGD
Celera28,216,493 - 8,216,691UniSTS
FHH x ACI Map20.0RGD
FHH x ACI Map20.0UniSTS
Cytogenetic Map2q11UniSTS
RH142501  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,485,966 - 11,486,074 (+)MAPPERmRatBN7.2
Rnor_6.029,081,348 - 9,081,455NCBIRnor6.0
Rnor_5.028,961,368 - 8,961,475UniSTSRnor5.0
RGSC_v3.429,013,158 - 9,013,265UniSTSRGSC3.4
Celera27,849,119 - 7,849,226UniSTS
Cytogenetic Map2q11UniSTS
RH135421  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,485,344 - 11,485,555 (+)MAPPERmRatBN7.2
Rnor_6.029,080,726 - 9,080,936NCBIRnor6.0
Rnor_5.028,960,746 - 8,960,956UniSTSRnor5.0
RGSC_v3.429,012,536 - 9,012,746UniSTSRGSC3.4
Celera27,848,102 - 7,848,312UniSTS
Cytogenetic Map2q11UniSTS
UniSTS:234165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2211,690,085 - 11,690,314 (+)MAPPERmRatBN7.2
Rnor_6.029,282,585 - 9,282,813NCBIRnor6.0
Rnor_5.029,162,877 - 9,163,105UniSTSRnor5.0
Celera28,052,144 - 8,052,372UniSTS
Cytogenetic Map2q11UniSTS
Cytogenetic Map3p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777212654247Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:495
Count of miRNA genes:257
Interacting mature miRNAs:337
Transcripts:ENSRNOT00000066186
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 35
Low 2 5 26 20 10 20 39 23 27 11
Below cutoff 1 38 21 13 9 13 8 8 12 14 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000039652   ⟹   ENSRNOP00000029273
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl28,927,173 - 9,023,104 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000066186
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl211,854,020 - 11,880,031 (-)Ensembl
Rnor_6.0 Ensembl29,446,634 - 9,504,118 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076313
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl211,331,442 - 11,344,279 (-)Ensembl
Rnor_6.0 Ensembl28,926,850 - 8,939,686 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076996   ⟹   ENSRNOP00000068422
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl211,331,442 - 11,911,688 (-)Ensembl
Rnor_6.0 Ensembl28,926,850 - 9,504,134 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084295   ⟹   ENSRNOP00000069171
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl29,450,584 - 9,472,384 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106714   ⟹   ENSRNOP00000080625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl211,331,442 - 11,911,688 (-)Ensembl
RefSeq Acc Id: XM_039103389   ⟹   XP_038959317
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2211,331,434 - 11,911,713 (-)NCBI
RefSeq Acc Id: XM_039103390   ⟹   XP_038959318
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2211,331,434 - 11,911,713 (-)NCBI
RefSeq Acc Id: XM_039103391   ⟹   XP_038959319
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2211,331,434 - 11,808,837 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038959317 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959318 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959319 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAF93946 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSRNOP00000068422   ⟸   ENSRNOT00000076996
RefSeq Acc Id: ENSRNOP00000069171   ⟸   ENSRNOT00000084295
RefSeq Acc Id: ENSRNOP00000029273   ⟸   ENSRNOT00000039652
RefSeq Acc Id: XP_038959318   ⟸   XM_039103390
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959317   ⟸   XM_039103389
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959319   ⟸   XM_039103391
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000080625   ⟸   ENSRNOT00000106714
Protein Domains
G_PROTEIN_RECEP_F2_4   GPS

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562101 AgrOrtholog
BioCyc Gene G2FUF-55022 BioCyc
Ensembl Genes ENSRNOG00000016306 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000068422 ENTREZGENE
  ENSRNOP00000068422.1 UniProtKB/TrEMBL
  ENSRNOP00000079660.1 UniProtKB/TrEMBL
  ENSRNOP00000080625.1 UniProtKB/TrEMBL
  ENSRNOP00000087766.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066186.2 UniProtKB/TrEMBL
  ENSRNOT00000076313.2 UniProtKB/TrEMBL
  ENSRNOT00000076996 ENTREZGENE
  ENSRNOT00000076996.3 UniProtKB/TrEMBL
  ENSRNOT00000106714.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.220.50 UniProtKB/TrEMBL
  2.60.40.2030 UniProtKB/TrEMBL
InterPro CalX-like_sf UniProtKB/TrEMBL
  Calx_beta UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  EAR UniProtKB/TrEMBL
  EPTP UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPR98 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LamG-like UniProtKB/TrEMBL
NCBI Gene 294614 ENTREZGENE
PANTHER PTHR46682 UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  Calx-beta UniProtKB/TrEMBL
  EPTP UniProtKB/TrEMBL
PhenoGen Adgrv1 PhenoGen
PROSITE EAR UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
SMART Calx_beta UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LamGL UniProtKB/TrEMBL
Superfamily-SCOP SSF141072 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A096MK89_RAT UniProtKB/TrEMBL
  A0A8I5ZNJ3_RAT UniProtKB/TrEMBL
  A0A8I6A7V4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-16 Adgrv1  adhesion G protein-coupled receptor V1  Gpr98  G protein-coupled receptor 98  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-11 RGD1562101  similar to very large G-protein coupled receptor 1  Gpr98  G protein-coupled receptor 98  Data Merged 737654 APPROVED
2012-10-11 Gpr98  G protein-coupled receptor 98  RGD1562101  similar to very large G-protein coupled receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-02 RGD1562101  similar to very large G-protein coupled receptor 1  LOC100362255  G protein-coupled receptor 98  Data Merged 1643240 APPROVED
2010-05-05 LOC100362255  G protein-coupled receptor 98      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-01-20 Gpr98  G protein-coupled receptor 98  LOC685383  similar to monogenic, audiogenic seizure susceptibility 1  Data Merged 737654 APPROVED
2008-04-30 RGD1562101  similar to very large G-protein coupled receptor 1   RGD1562101_predicted  similar to very large G-protein coupled receptor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2008-03-05 Gpr98  G protein-coupled receptor 98  LOC362068  similar to monogenic, audiogenic seizure susceptibility 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685383  similar to monogenic, audiogenic seizure susceptibility 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC362068  similar to monogenic, audiogenic seizure susceptibility 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1562101_predicted  similar to very large G-protein coupled receptor 1 (predicted)  LOC294614  similar to very large G-protein coupled receptor 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC294614  similar to very large G-protein coupled receptor 1      Symbol and Name status set to provisional 70820 PROVISIONAL