Ndp (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | X | 8,379,569 - 8,404,019 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | X | 5,796,487 - 5,820,934 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | X | 5,796,487 - 5,820,934 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | X | 5,849,552 - 5,874,029 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | X | 9,325,362 - 9,349,843 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | X | 5,645,547 - 5,669,996 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | X | 6,791,090 - 6,815,586 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | X | 6,791,136 - 6,815,583 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | X | 6,273,733 - 6,281,789 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | X | 7,591,522 - 7,615,969 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | X | 17,416,946 - 17,441,393 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | X | 6,291,036 - 6,315,505 (+) | NCBI | | Celera | | | Cytogenetic Map | X | q11 | NCBI | | | | |
|
NDP (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | X | 43,948,776 - 43,973,390 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 43,948,776 - 43,973,395 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | X | 43,808,022 - 43,832,636 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | X | 43,692,966 - 43,717,788 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | X | 43,564,279 - 43,589,004 | NCBI | | | | | Celera | X | 47,947,782 - 47,972,683 (-) | NCBI | | Celera | | | Cytogenetic Map | X | p11.3 | NCBI | | | | | HuRef | X | 41,537,322 - 41,562,014 (-) | NCBI | | HuRef | | | CHM1_1 | X | 43,841,148 - 43,866,049 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 43,354,970 - 43,379,584 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Ndp (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | X | 16,751,760 - 16,778,013 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | X | 16,751,760 - 16,778,013 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | X | 16,885,521 - 16,911,774 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | X | 16,885,521 - 16,911,774 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | X | 16,462,647 - 16,488,890 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | X | 16,042,480 - 16,068,723 (-) | NCBI | | MGSCv36 | mm8 | | Celera | X | 14,501,428 - 14,528,313 (-) | NCBI | | Celera | | | Cytogenetic Map | X | A1.2 | NCBI | | | | | cM Map | X | 12.07 | NCBI | | | | |
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Ndp (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955516 | 4,218,703 - 4,244,846 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955516 | 4,218,703 - 4,244,774 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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NDP (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | X | 45,598,907 - 45,624,024 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | X | 45,602,261 - 45,627,401 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | X | 36,399,868 - 36,424,953 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | X | 44,224,161 - 44,249,067 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | X | 44,224,161 - 44,249,067 (-) | Ensembl | panpan1.1 | | panPan2 | |
|
NDP (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | X | 37,949,560 - 37,975,573 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | X | 37,950,489 - 37,975,346 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | X | 25,177,615 - 25,203,684 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | X | 38,037,857 - 38,063,932 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | X | 38,037,857 - 38,063,661 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | X | 38,078,999 - 38,105,057 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | X | 38,061,990 - 38,088,102 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | X | 38,157,025 - 38,183,125 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Ndp (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | X | 30,239,407 - 30,264,429 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936502 | 10,080,145 - 10,105,328 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936502 | 10,080,169 - 10,105,155 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
NDP (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | X | 39,208,119 - 39,235,758 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | X | 39,208,115 - 39,235,879 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | X | 43,540,096 - 43,551,795 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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NDP (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | X | 41,122,064 - 41,148,097 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | X | 41,121,874 - 41,147,567 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666076 | 6,340,796 - 6,365,938 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Ndp (Heterocephalus glaber - naked mole-rat) |
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