Tex15 (testis expressed 15, meiosis and synapsis associated) - Rat Genome Database

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Gene: Tex15 (testis expressed 15, meiosis and synapsis associated) Rattus norvegicus
Analyze
Symbol: Tex15
Name: testis expressed 15, meiosis and synapsis associated
RGD ID: 1311266
Description: Predicted to be involved in several processes, including meiotic nuclear division; negative regulation of transposition; and regulation of double-strand break repair via homologous recombination. Predicted to act upstream of or within with a positive effect on DNA methylation-dependent heterochromatin formation. Predicted to act upstream of or within several processes, including homeostasis of number of cells within a tissue; homologous chromosome pairing at meiosis; and male genitalia development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in spermatogenic failure 25. Orthologous to human TEX15 (testis expressed 15, meiosis and synapsis associated); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC290803; testis expressed 15; testis expressed gene 15; testis-expressed protein 15; testis-expressed sequence 15 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,598,991 - 58,659,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,936,295 - 63,996,239 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01667,349,960 - 67,409,908 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01662,570,526 - 62,630,477 (-)NCBIRnor_WKY
Rnor_6.01662,313,284 - 62,373,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,313,263 - 62,373,253 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,973,992 - 62,033,389 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,371,381 - 62,385,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11662,371,457 - 62,426,794 (-)NCBI
Celera1656,634,538 - 56,648,602 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18283110  


Genomics

Comparative Map Data
Tex15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21658,598,991 - 58,659,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,936,295 - 63,996,239 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01667,349,960 - 67,409,908 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01662,570,526 - 62,630,477 (-)NCBIRnor_WKY
Rnor_6.01662,313,284 - 62,373,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,313,263 - 62,373,253 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,973,992 - 62,033,389 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,371,381 - 62,385,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11662,371,457 - 62,426,794 (-)NCBI
Celera1656,634,538 - 56,648,602 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
TEX15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,831,544 - 30,913,008 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl830,831,544 - 30,913,008 (-)EnsemblGRCh38hg38GRCh38
GRCh37830,689,060 - 30,770,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,808,602 - 30,826,075 (-)NCBINCBI36Build 36hg18NCBI36
Build 34830,808,601 - 30,826,075NCBI
Celera829,649,146 - 29,666,582 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef829,235,466 - 29,252,937 (-)NCBIHuRef
CHM1_1830,890,491 - 30,907,972 (-)NCBICHM1_1
T2T-CHM13v2.0831,112,556 - 31,194,025 (-)NCBIT2T-CHM13v2.0
Tex15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,006,712 - 34,082,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,006,766 - 34,075,610 (+)EnsemblGRCm39 Ensembl
GRCm38833,516,689 - 33,592,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,516,738 - 33,585,582 (+)EnsemblGRCm38mm10GRCm38
MGSCv37834,681,016 - 34,696,057 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,036,479 - 35,051,520 (+)NCBIMGSCv36mm8
Celera836,200,642 - 36,216,135 (+)NCBICelera
Cytogenetic Map8A4NCBI
Tex15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554637,298,030 - 7,360,971 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554637,296,204 - 7,360,935 (-)NCBIChiLan1.0ChiLan1.0
TEX15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1827,334,129 - 27,421,154 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl827,334,129 - 27,420,049 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0830,145,628 - 30,232,903 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TEX15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11633,423,546 - 33,517,458 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1633,423,876 - 33,515,452 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1633,882,573 - 33,976,660 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01635,449,398 - 35,543,325 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1635,448,620 - 35,541,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11633,548,113 - 33,641,995 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,122,468 - 34,216,450 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,241,104 - 34,335,002 (+)NCBIUU_Cfam_GSD_1.0
Tex15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494356,636,584 - 56,695,650 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936792668,290 - 727,197 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11554,210,139 - 54,277,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,580,113 - 61,648,703 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,947,414 - 29,044,215 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,947,423 - 28,991,634 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,078,499 - 13,146,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478013,198,592 - 13,298,703 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478013,198,569 - 13,297,189 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
AU022940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,607,719 - 58,607,957 (+)MAPPERmRatBN7.2
Rnor_6.01662,322,015 - 62,322,252NCBIRnor6.0
Rnor_5.01661,982,723 - 61,982,960UniSTSRnor5.0
RGSC_v3.41662,380,112 - 62,380,349UniSTSRGSC3.4
Celera1656,643,266 - 56,643,503UniSTS
Cytogenetic Map16q12.3UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:80
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000034325
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 24
Low 2 11 2 4 2 74 34 14 8
Below cutoff 2 28 22 15 13 15 5 5 1 3 3 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000034325   ⟹   ENSRNOP00000032440
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)Ensembl
Rnor_6.0 Ensembl1662,313,263 - 62,373,253 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107080   ⟹   ENSRNOP00000086267
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)Ensembl
RefSeq Acc Id: NM_001106087   ⟹   NP_001099557
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,598,991 - 58,658,402 (-)NCBI
Rnor_6.01662,313,284 - 62,327,351 (-)NCBI
Rnor_5.01661,973,992 - 62,033,389 (-)NCBI
RGSC_v3.41662,371,381 - 62,385,448 (-)RGD
Celera1656,634,538 - 56,648,602 (-)RGD
Sequence:
RefSeq Acc Id: XM_008771296   ⟹   XP_008769518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,598,991 - 58,659,005 (-)NCBI
Rnor_6.01662,313,284 - 62,373,288 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771298   ⟹   XP_008769520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,598,991 - 58,641,538 (-)NCBI
Rnor_6.01662,313,284 - 62,355,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094393   ⟹   XP_038950321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21658,598,991 - 58,659,005 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099557 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769518 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769520 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950321 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM09139 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099557   ⟸   NM_001106087
- Sequence:
RefSeq Acc Id: XP_008769518   ⟸   XM_008771296
- Peptide Label: isoform X1
- UniProtKB: D3ZYB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769520   ⟸   XM_008771298
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000032440   ⟸   ENSRNOT00000034325
RefSeq Acc Id: XP_038950321   ⟸   XM_039094393
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000086267   ⟸   ENSRNOT00000107080
Protein Domains
DUF3715   TEX15

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700144
Promoter ID:EPDNEW_R10666
Type:single initiation site
Name:Tex15_1
Description:testis expressed 15, meiosis and synapsis associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01662,373,256 - 62,373,316EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 62316681 62316682 G C snv Buf/N (MCW), BUF/N (2020), BBDP/Wor (RGD)
16 62322541 62322542 G A snv WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB4/IpcvMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), SHRSP/Gcrc (RGD), GK/Ox (RGD), SHR/NHsd (RGD)
16 62322547 62322548 G A snv BBDP/Wor (RGD)
16 62326286 62326287 C T snv BBDP/Wor (RGD)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 61977389 61977390 G C snv BBDP/WorN (KNAW), BUF/N (KNAW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), HTX/Kyo (KyushuU), ZFDM (KyushuU)
16 61983249 61983250 G A snv IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), WKY/NHsd (KNAW), WKY/NCrl (KNAW), WKY/N (KNAW), WKY/Gcrc (KNAW), SHRSP/Gcrc (KNAW), SHR/OlaIpcvPrin (KNAW), SHR/OlaIpcv (KNAW), SHR/NHsd (KNAW), GK/Ox (KNAW), SHR/NCrlPrin (KNAW)
16 61983255 61983256 G A snv SDLEF7/Barth (UDEL), Crl:SD (UDEL), HTX/Kyo (KyushuU), ZFDM (KyushuU), BBDP/WorN (KNAW)
16 61986994 61986995 C T snv SDLEF7/Barth (UDEL), Crl:SD (UDEL), HTX/Kyo (KyushuU), ZFDM (KyushuU), BBDP/WorN (KNAW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 58602386 58602387 G C snv BUF/N (2020)
16 58608246 58608247 G A snv HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), WKY/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), GK/FarMcwi (2019), HXB4/IpcvMcwi (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311266 AgrOrtholog
BioCyc Gene G2FUF-11116 BioCyc
Ensembl Genes ENSRNOG00000007748 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000032440 ENTREZGENE
  ENSRNOP00000032440.5 UniProtKB/TrEMBL
  ENSRNOP00000086267.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034325 ENTREZGENE
  ENSRNOT00000034325.6 UniProtKB/TrEMBL
  ENSRNOT00000107080.1 UniProtKB/TrEMBL
InterPro DUF3715 UniProtKB/TrEMBL
  TEX15 UniProtKB/TrEMBL
  TEX15_dom UniProtKB/TrEMBL
NCBI Gene 290803 ENTREZGENE
PANTHER PTHR22380 UniProtKB/TrEMBL
Pfam DUF3715 UniProtKB/TrEMBL
  TEX15 UniProtKB/TrEMBL
PhenoGen Tex15 PhenoGen
UniProt A0A8I6A4Z7_RAT UniProtKB/TrEMBL
  D3ZYB8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-03 Tex15  testis expressed 15, meiosis and synapsis associated  Tex15  testis expressed 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Tex15  testis expressed 15  Tex15  testis expressed gene 15   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tex15  testis expressed gene 15   Tex15_predicted  testis expressed gene 15 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tex15_predicted  testis expressed gene 15 (predicted)      Symbol and Name status set to approved 70820 APPROVED