Src (SRC proto-oncogene, non-receptor tyrosine kinase) - Rat Genome Database
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Gene: Src (SRC proto-oncogene, non-receptor tyrosine kinase) Rattus norvegicus
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Symbol: Src
Name: SRC proto-oncogene, non-receptor tyrosine kinase
RGD ID: 620795
Description: Exhibits several functions, including enzyme binding activity; ion channel binding activity; and signaling receptor binding activity. Involved in several processes, including cellular response to lipid; positive regulation of cell communication; and positive regulation of cellular metabolic process. Localizes to several cellular components, including caveola; glutamatergic synapse; and postsynaptic specialization. Used to study brain ischemia; hypertension; status epilepticus; and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in colon cancer; colorectal cancer; ductal carcinoma in situ; prostate cancer; and type 2 diabetes mellitus. Orthologous to human SRC (SRC proto-oncogene, non-receptor tyrosine kinase); PARTICIPATES IN dopamine signaling pathway; epidermal growth factor/neuregulin signaling pathway; estrogen signaling pathway; INTERACTS WITH (+)-pilocarpine; (25R)-cholest-5-ene-3beta,26-diol; 1,2,3,4,6,7,8-Heptachlorodibenzodioxin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: c-Src; p60-Src; pp60c-src; proto-oncogene c-Src; proto-oncogene tyrosine-protein kinase Src; Rous sarcoma oncogene; tyrosine protein kinase c-src; tyrosine protein kinase pp60-c-src; v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog; v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog; v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23146,091,969 - 146,139,492 (+)NCBI
Rnor_6.0 Ensembl3153,580,861 - 153,595,642 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03153,547,807 - 153,595,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03158,123,674 - 158,171,912 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43148,157,256 - 148,170,524 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13148,063,164 - 148,076,433 (+)NCBI
Celera3144,830,256 - 144,843,524 (+)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
(25R)-cholest-5-ene-3beta,26-diol  (EXP)
(S)-nicotine  (ISO)
1,2,3,4,6,7,8-Heptachlorodibenzodioxin  (EXP)
1,8-cineole  (ISO)
1-O-palmitoyl-2-O-(5-oxovaleryl)-sn-glycero-3-phosphocholine  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 17-glucosiduronic acid  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2-bis(4-chlorophenyl)ethanol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-chloroethanol  (ISO)
2-methoxyethanol  (EXP)
2-methylcholine  (ISO)
2-tert-butylhydroquinone  (ISO)
26-hydroxycholesterol  (EXP)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
3-methylcholanthrene  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-chloro-7-iodoquinolin-8-ol  (ISO)
5-fluorouracil  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
AH23848  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinol  (EXP)
allyl isothiocyanate  (ISO)
alpha-naphthoflavone  (ISO)
alpha-pinene  (ISO)
ammonia  (ISO)
ammonium chloride  (EXP)
amosite asbestos  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
beauvericin  (EXP)
benzamide  (ISO)
benzamidine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-hexachlorocyclohexane  (ISO)
beta-naphthoflavone  (EXP)
bifenthrin  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bosutinib  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
Calcimycin  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP,ISO)
capsaicin  (EXP,ISO)
captan  (ISO)
carbachol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpromazine  (EXP)
chlorpyrifos  (ISO)
cholesterol  (ISO)
cholic acid  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cycloheximide  (EXP)
cyhalothrin  (ISO)
cypermethrin  (ISO)
D-glucose  (EXP,ISO)
D-mannitol  (EXP)
decabromodiphenyl ether  (EXP,ISO)
Deguelin  (ISO)
dehydroepiandrosterone  (EXP,ISO)
dehydroepiandrosterone sulfate  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dieldrin  (EXP)
diethylstilbestrol  (EXP)
dimethylarsinic acid  (ISO)
dioscin  (ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
emodin  (ISO)
endosulfan  (EXP,ISO)
equol  (ISO)
erlotinib hydrochloride  (ISO)
Estragole  (EXP)
ethanol  (EXP)
everolimus  (ISO)
filipin III  (ISO)
flavonoids  (EXP)
flavonol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
Garcinol  (ISO)
geldanamycin  (EXP,ISO)
gemcitabine  (ISO)
genistein  (EXP)
Geraniin  (ISO)
glucose  (EXP,ISO)
glycerol 2-phosphate  (ISO)
glycogen  (ISO)
Goe 6976  (ISO)
hexachlorobenzene  (EXP,ISO)
Honokiol  (ISO)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP,ISO)
hydroxyflutamide  (EXP)
indoxyl sulfate  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
KN-93  (EXP)
L-ascorbic acid  (ISO)
L-methionine  (ISO)
lapatinib  (ISO)
Lasiocarpine  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (EXP)
lead(2+)  (EXP)
leukotriene D4  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
LY294002  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
maslinic acid  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxyacetic acid  (EXP)
methyl beta-cyclodextrin  (ISO)
methylarsonic acid  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-formyl-L-methionyl-L-leucyl-L-phenylalanine  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (EXP,ISO)
nickel subsulfide  (EXP)
nickel sulfate  (EXP)
niclosamide  (ISO)
nicotine  (ISO)
nitric oxide  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
oridonin  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
p-anisidine  (ISO)
paracetamol  (EXP)
PD173074  (ISO)
perfluorooctanoic acid  (ISO)
phencyclidine  (EXP)
phenobarbital  (EXP)
phenylarsine oxide  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pinosylvin  (ISO)
PK-11195  (ISO)
platycodin D  (ISO)
poly(ethylene)  (ISO)
ponatinib  (ISO)
potassium chloride  (EXP)
potassium iodide  (ISO)
protein kinase inhibitor  (EXP)
quercetin  (ISO)
quercitrin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (EXP,ISO)
riddelliine  (EXP)
rifampicin  (ISO)
rimonabant  (ISO)
ritonavir  (ISO)
Salvianolic acid A  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sorafenib  (ISO)
SU6656  (ISO)
succimer  (ISO)
sulindac  (EXP,ISO)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thymol  (ISO)
thymol sulfate(1-)  (ISO)
thymoquinone  (ISO)
thyroxine  (ISO)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
trans-pinosylvin  (ISO)
tributylstannane  (ISO)
tyrphostin AG 1478  (EXP,ISO)
U-73122  (ISO)
ursolic acid  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
wogonin  (ISO)
wortmannin  (ISO)
xanthohumol  (ISO)
zinc atom  (ISO)
zinc dichloride  (EXP)
zinc protoporphyrin  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of protein kinase B activity  (IMP)
adherens junction organization  (IEP)
angiotensin-activated signaling pathway involved in heart process  (ISO)
bone resorption  (IBA,ISO,ISS)
branching involved in mammary gland duct morphogenesis  (ISO)
cell adhesion  (IBA)
cell differentiation  (IBA)
cell migration  (ISO)
cell population proliferation  (IDA)
cell-cell adhesion  (IEP)
cellular response to fatty acid  (IEP)
cellular response to fluid shear stress  (ISO)
cellular response to hydrogen peroxide  (ISO)
cellular response to hypoxia  (IEP)
cellular response to insulin stimulus  (IEP)
cellular response to lipopolysaccharide  (IEP)
cellular response to peptide hormone stimulus  (ISO)
cellular response to platelet-derived growth factor stimulus  (ISO)
cellular response to progesterone stimulus  (IMP)
cellular response to reactive oxygen species  (ISO)
cellular response to transforming growth factor beta stimulus  (ISO)
epidermal growth factor receptor signaling pathway  (IBA,IEP)
focal adhesion assembly  (ISO)
forebrain development  (ISO)
innate immune response  (IBA)
integrin-mediated signaling pathway  (ISO)
interleukin-6-mediated signaling pathway  (ISO)
intestinal epithelial cell development  (ISO)
intracellular signal transduction  (ISO)
negative regulation of anoikis  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  (ISO)
negative regulation of extrinsic apoptotic signaling pathway  (IBA,ISO)
negative regulation of focal adhesion assembly  (IMP)
negative regulation of intrinsic apoptotic signaling pathway  (IBA,ISO)
negative regulation of mitochondrial depolarization  (ISO)
negative regulation of protein-containing complex assembly  (ISO)
negative regulation of telomerase activity  (ISO)
negative regulation of telomere maintenance via telomerase  (ISO)
negative regulation of transcription, DNA-templated  (IMP)
neurotrophin TRK receptor signaling pathway  (IDA)
odontogenesis  (ISO)
oogenesis  (ISO)
osteoclast development  (IBA,ISO)
peptidyl-serine phosphorylation  (IMP)
peptidyl-tyrosine autophosphorylation  (IBA,IMP)
peptidyl-tyrosine phosphorylation  (ISO)
phosphorylation  (ISO)
positive regulation of apoptotic process  (IDA)
positive regulation of canonical Wnt signaling pathway  (ISO)
positive regulation of cell adhesion  (IDA)
positive regulation of cyclin-dependent protein serine/threonine kinase activity  (IMP)
positive regulation of cytokine production  (IMP)
positive regulation of dephosphorylation  (ISO)
positive regulation of DNA biosynthetic process  (IMP)
positive regulation of epithelial cell migration  (ISO)
positive regulation of ERK1 and ERK2 cascade  (IMP,ISO)
positive regulation of gene expression  (IMP)
positive regulation of glucose metabolic process  (IMP)
positive regulation of insulin receptor signaling pathway  (IDA)
positive regulation of intracellular signal transduction  (IMP)
positive regulation of lamellipodium morphogenesis  (ISO)
positive regulation of MAP kinase activity  (IMP)
positive regulation of Notch signaling pathway  (ISO)
positive regulation of outer hair cell apoptotic process  (ISO)
positive regulation of ovarian follicle development  (IMP)
positive regulation of peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of phosphatidylinositol 3-kinase activity  (IMP)
positive regulation of platelet-derived growth factor receptor signaling pathway  (IEP)
positive regulation of platelet-derived growth factor receptor-beta signaling pathway  (ISO)
positive regulation of podosome assembly  (ISO)
positive regulation of protein autophosphorylation  (IMP)
positive regulation of protein kinase B signaling  (ISO)
positive regulation of protein localization to nucleus  (ISO)
positive regulation of protein processing  (ISO)
positive regulation of protein serine/threonine kinase activity  (ISO)
positive regulation of protein transport  (IMP)
positive regulation of small GTPase mediated signal transduction  (ISO)
positive regulation of smooth muscle cell migration  (IMP)
positive regulation of transcription, DNA-templated  (IMP)
primary ovarian follicle growth  (IMP)
progesterone receptor signaling pathway  (IBA,IMP)
protein autophosphorylation  (IDA,ISO)
protein destabilization  (ISO)
protein phosphorylation  (ISO)
regulation of caveolin-mediated endocytosis  (ISO)
regulation of cell population proliferation  (IBA)
regulation of cell projection assembly  (ISO)
regulation of cell-cell adhesion  (ISO)
regulation of early endosome to late endosome transport  (ISO)
regulation of epithelial cell migration  (ISO)
regulation of intracellular estrogen receptor signaling pathway  (ISO)
regulation of postsynaptic neurotransmitter receptor activity  (EXP,IDA)
regulation of protein binding  (ISO)
response to acidic pH  (IEP)
response to drug  (IEP)
response to electrical stimulus  (IEP)
response to fatty acid  (IEP)
response to hydrogen peroxide  (IEP)
response to interleukin-1  (ISO)
response to mechanical stimulus  (IEP)
response to mineralocorticoid  (IEP)
response to nutrient levels  (IEP)
response to virus  (IEP)
stress fiber assembly  (ISO)
substrate adhesion-dependent cell spreading  (ISO)
transcytosis  (IDA)
transforming growth factor beta receptor signaling pathway  (ISO)
transmembrane receptor protein tyrosine kinase signaling pathway  (IBA)
uterus development  (ISO)

Cellular Component

References

References - curated
1. Al-Khalili O, etal., DNA Seq 2001 Dec;12(5-6):425-9.
2. Arachiche A, etal., J Biol Chem. 2008 Sep 5;283(36):24406-11. doi: 10.1074/jbc.M709217200. Epub 2008 Jun 26.
3. Arena S, etal., Mol Endocrinol. 2007 Jan;21(1):229-46. Epub 2006 Oct 4.
4. Birchmeier C, etal., Nat Rev Mol Cell Biol. 2003 Dec;4(12):915-25.
5. Brown D, etal., Endocrinology 2003 Jan;144(1):201-11.
6. Callera GE, etal., Hypertension. 2005 Oct;46(4):1032-8. Epub 2005 Sep 12.
7. Carini R, etal., J Hepatol. 2007 Apr;46(4):692-9. Epub 2006 Nov 27.
8. Cayabyab FS and Schlichter LC, J Biol Chem 2002 Apr 19;277(16):13673-81.
9. Chen LY, etal., Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):7030-5. Epub 2010 Mar 30.
10. Chen M, etal., Neurosci Lett. 2003 Mar 13;339(1):29-32.
11. Chen YM, etal., Biol Reprod. 2003 Aug;69(2):656-72. Epub 2003 Apr 16.
12. Choi JS, etal., Neurosci Lett. 2005 May 20-27;380(1-2):1-5. Epub 2005 Jan 26.
13. Choudhury GG, etal., Cell Signal. 2006 Nov;18(11):1854-64.
14. Courtneidge SA, etal., Proc Natl Acad Sci U S A. 1980 Jul;77(7):3783-7.
15. Criscuoli ML, etal., Blood. 2005 Feb 15;105(4):1508-14. Epub 2004 Oct 14.
16. Dadke S and Chernoff J, Biochem J. 2002 Jun 1;364(Pt 2):377-83.
17. Dikic I, etal., Nature. 1996 Oct 10;383(6600):547-50. doi: 10.1038/383547a0.
18. Du XY, etal., Reprod Biol Endocrinol. 2012 Aug 20;10:58. doi: 10.1186/1477-7827-10-58.
19. Dubuis E, etal., Cardiovasc Res. 2006 Feb 1;69(2):391-401. Epub 2005 Dec 13.
20. Duffy HS, etal., Circ Res. 2004 Feb 6;94(2):215-22. Epub 2003 Dec 29.
21. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
22. Gentile A, etal., Cancer Metastasis Rev. 2008 Mar;27(1):85-94.
23. Gingrich JR, etal., Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6237-42. Epub 2004 Apr 6.
24. Gupte RS, etal., Free Radic Biol Med. 2009 Feb 20.
25. Hsieh HL, etal., Neurotox Res. 2010 May;17(4):344-59. Epub 2009 Sep 10.
26. Hsu SP, etal., Atherosclerosis. 2011 Jul;217(1):83-9. doi: 10.1016/j.atherosclerosis.2011.02.051. Epub 2011 Mar 10.
27. Huo JZ, etal., Neurosci Lett. 2006 Jul 3;401(3):266-70. Epub 2006 Apr 4.
28. Irby RB, etal., Nat Genet. 1999 Feb;21(2):187-90.
29. Jacob AI, etal., J Mol Endocrinol. 2010 Mar;44(3):155-69. Epub 2009 Dec 1.
30. Jung EJ and Kim CW, Exp Mol Med. 2002 Dec 31;34(6):476-80.
31. Kalia LV and Salter MW, Neuropharmacology. 2003 Nov;45(6):720-8.
32. Lee NP and Cheng CY, J Cell Physiol. 2005 Feb;202(2):344-60.
33. Levenson JM, etal., Biochim Biophys Acta. 2008 Aug;1779(8):422-31. Epub 2008 Jan 12.
34. Li Y, etal., J Biol Chem. 2004 Oct 29;279(44):45399-407. Epub 2004 Aug 10.
35. Liang S, etal., J Pharmacol Exp Ther. 2009 Dec;331(3):827-35. Epub 2009 Sep 9.
36. Lin D, etal., J Biol Chem. 2008 Mar 21;283(12):7674-81. Epub 2008 Jan 22.
37. Liu SQ, etal., Am J Physiol Heart Circ Physiol. 2003 Sep;285(3):H1081-90. Epub 2003 May 8.
38. Liu Y, etal., Brain Res. 2001 Aug 3;909(1-2):51-8.
39. Longo M, etal., Bone. 2004 Jan;34(1):100-11.
40. Lu T, etal., Circ Res. 2010 Apr 2;106(6):1164-73. Epub 2010 Feb 18.
41. Lucas TF, etal., Biol Reprod. 2008 Jan;78(1):101-14. Epub 2007 Oct 10.
42. Lucas TF, etal., Biol Reprod. 2010 Aug 1;83(2):307-17. Epub 2010 May 5.
43. Lundby A, etal., Cell. 2019 Oct 3;179(2):543-560.e26. doi: 10.1016/j.cell.2019.09.008.
44. Maa MC, etal., J Nutr Biochem. 2010 Feb 8.
45. Mallozzi C, etal., J Neurochem. 2009 Nov;111(3):859-69. Epub 2009 Sep 8.
46. Melendez J, etal., J Biol Chem. 2004 Dec 17;279(51):53516-23. Epub 2004 Aug 22.
47. MGD data from the GO Consortium
48. Morgan L, etal., Cancer Biol Ther. 2009 Aug;8(16):1550-8.
49. Muller MM, etal., J Cell Biol. 2009 Nov 16;187(4):569-81.
50. Murillo MM, etal., Oncogene. 2005 Jun 30;24(28):4580-7.
51. Napolitano M, etal., Neurosci Lett. 2006 May 8;398(3):211-4. Epub 2006 Mar 9.
52. Nasertorabi F, etal., J Mol Recognit. 2006 Jan-Feb;19(1):30-8.
53. NCBI rat LocusLink and RefSeq merged data July 26, 2002
54. Nishida T, etal., J Biochem. 2009 Dec;146(6):881-6. Epub 2009 Aug 27.
55. Obara Y, etal., J Cell Sci. 2004 Dec 1;117(Pt 25):6085-94. Epub 2004 Nov 16.
56. Pawlak G and Helfman DM, J Biol Chem 2002 Jul 26;277(30):26927-33.
57. Pera IL, etal., Oncogene. 2005 Apr 28;24(19):3187-95.
58. Pipeline to import KEGG annotations from KEGG into RGD
59. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
60. Potula HS, etal., J Biol Chem. 2009 Nov 6;284(45):31142-55. Epub 2009 Sep 7.
61. Rafiq K, etal., J Biol Chem. 2012 Feb 17;287(8):5327-39. doi: 10.1074/jbc.M111.307009. Epub 2011 Dec 27.
62. RGD automated data pipeline
63. RGD automated import pipeline for gene-chemical interactions
64. Rosenzweig T, etal., Cell Signal. 2004 Nov;16(11):1299-308.
65. Saavedra FR, etal., Arch Biochem Biophys. 2004 Dec 15;432(2):261-8.
66. Saito S, etal., J Biol Chem. 2002 Nov 22;277(47):44695-700. Epub 2002 Sep 10.
67. Salvi M, etal., Biochim Biophys Acta 2002 Apr 3;1589(2):181-95.
68. Schliess F, etal., J Biol Chem. 2004 May 14;279(20):21294-301. Epub 2004 Feb 24.
69. Sedding DG, etal., Circ Res. 2005 Apr 1;96(6):635-42. Epub 2005 Feb 24.
70. Shajahan AN, etal., J Biol Chem. 2004 May 7;279(19):20392-400. Epub 2004 Mar 8.
71. Takikita-Suzuki M, etal., Am J Pathol. 2003 Jul;163(1):277-86.
72. Tatarov O, etal., Clin Cancer Res. 2009 May 15;15(10):3540-9. Epub 2009 May 15.
73. Thornton C, etal., J Biol Chem. 2003 Jun 27;278(26):23823-9. Epub 2003 Apr 14.
74. Tsuganezawa H, etal., Kidney Int 2002 Jul;62(1):41-50.
75. Tung WH, etal., J Cell Physiol. 2010 Mar 23.
76. Wang WW, etal., Brain Res. 2010 Apr 30;1328:162-70. Epub 2010 Mar 1.
77. Wang Y, etal., J Neuroinflammation. 2010 Apr 9;7:24.
78. Wang ZJ, etal., Am J Physiol Renal Physiol. 2010 Mar 31.
79. Wei H, etal., Biochim Biophys Acta. 2015 Oct;1853(10 Pt B):2784-90. doi: 10.1016/j.bbamcr.2015.03.013. Epub 2015 Apr 1.
80. Wilson GR, etal., Br J Cancer. 2006 Nov 20;95(10):1410-4. Epub 2006 Oct 24.
81. Wong CH, etal., Endocrinology. 2005 Mar;146(3):1192-204. Epub 2004 Dec 9.
82. Yu XM, etal., Science. 1997 Jan 31;275(5300):674-8.
Additional References at PubMed
PMID:1381360   PMID:8070403   PMID:8402898   PMID:8438166   PMID:8657134   PMID:8805372   PMID:8910389   PMID:8953041   PMID:9582366   PMID:9799234   PMID:10082587   PMID:10861086  
PMID:11249956   PMID:11274221   PMID:11448999   PMID:11864995   PMID:12051764   PMID:12065411   PMID:12091389   PMID:12526740   PMID:12538589   PMID:12615910   PMID:12692262   PMID:12767047  
PMID:12808090   PMID:12826681   PMID:12923167   PMID:12925710   PMID:14523024   PMID:14630916   PMID:14636584   PMID:14739300   PMID:15248232   PMID:15292044   PMID:15607978   PMID:15644319  
PMID:15695822   PMID:15699470   PMID:15705590   PMID:15735019   PMID:15833739   PMID:15857395   PMID:15869794   PMID:15878970   PMID:15890643   PMID:15937334   PMID:16007215   PMID:16123104  
PMID:16162939   PMID:16170374   PMID:16236484   PMID:16441665   PMID:16478473   PMID:16479011   PMID:16511561   PMID:16554304   PMID:16597920   PMID:16767106   PMID:16893669   PMID:16921024  
PMID:16943426   PMID:17045821   PMID:17088251   PMID:17136425   PMID:17156388   PMID:17252537   PMID:17335807   PMID:17344476   PMID:17401665   PMID:17446308   PMID:17569658   PMID:17569670  
PMID:17612500   PMID:17623777   PMID:17629454   PMID:17848177   PMID:17855367   PMID:17893324   PMID:17999938   PMID:18032393   PMID:18054784   PMID:18252715   PMID:18257749   PMID:18314882  
PMID:18353971   PMID:18498770   PMID:18541665   PMID:18559349   PMID:18599541   PMID:18616564   PMID:18616680   PMID:18667434   PMID:18678878   PMID:18680145   PMID:18682436   PMID:18697750  
PMID:18712054   PMID:18786925   PMID:19056867   PMID:19059439   PMID:19141530   PMID:19147496   PMID:19193640   PMID:19208792   PMID:19281832   PMID:19307596   PMID:19332538   PMID:19349302  
PMID:19376806   PMID:19448635   PMID:19767770   PMID:19920076   PMID:20100835   PMID:20385227   PMID:20432467   PMID:20458337   PMID:20530578   PMID:20553682   PMID:20569495   PMID:20605918  
PMID:20624904   PMID:20645409   PMID:21036157   PMID:21063895   PMID:21209319   PMID:21262218   PMID:21334414   PMID:21340460   PMID:21354239   PMID:21411625   PMID:21525037   PMID:21531765  
PMID:21536676   PMID:21678081   PMID:21724833   PMID:21829547   PMID:21926342   PMID:21938483   PMID:22027834   PMID:22078298   PMID:22120166   PMID:22227249   PMID:22349424   PMID:22384254  
PMID:22402981   PMID:22732588   PMID:22759635   PMID:22952679   PMID:22956847   PMID:22992730   PMID:23100514   PMID:23159740   PMID:23174213   PMID:23288841   PMID:23376485   PMID:23400779  
PMID:23484111   PMID:23526378   PMID:23651497   PMID:23882690   PMID:24036928   PMID:24127566   PMID:24190966   PMID:24764294   PMID:24840386   PMID:24841674   PMID:24984203   PMID:25006397  
PMID:25017399   PMID:25117412   PMID:25259869   PMID:25269821   PMID:25425738   PMID:25468996   PMID:25471013   PMID:25720289   PMID:25748795   PMID:26037503   PMID:26241029   PMID:26466383  
PMID:26598555   PMID:26706435   PMID:26854804   PMID:26866809   PMID:26969275   PMID:27122093   PMID:27391443   PMID:27857196   PMID:27903584   PMID:27994061   PMID:28122732   PMID:28235806  
PMID:28673614   PMID:28943431   PMID:28952414   PMID:29462885   PMID:30142894  


Genomics

Comparative Map Data
Src
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23146,091,969 - 146,139,492 (+)NCBI
Rnor_6.0 Ensembl3153,580,861 - 153,595,642 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03153,547,807 - 153,595,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03158,123,674 - 158,171,912 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43148,157,256 - 148,170,524 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13148,063,164 - 148,076,433 (+)NCBI
Celera3144,830,256 - 144,843,524 (+)NCBICelera
Cytogenetic Map3q42NCBI
SRC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2037,344,685 - 37,406,050 (+)EnsemblGRCh38hg38GRCh38
GRCh382037,344,690 - 37,406,050 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372035,973,102 - 36,034,453 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh372035,973,088 - 36,033,835 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362035,406,502 - 35,467,235 (+)NCBINCBI36hg18NCBI36
Build 342035,407,970 - 35,467,233NCBI
Celera2032,680,370 - 32,741,098 (+)NCBI
Cytogenetic Map20q11.23NCBI
HuRef2032,708,654 - 32,769,187 (+)NCBIHuRef
CHM1_12035,876,016 - 35,936,689 (+)NCBICHM1_1
Src
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392157,265,790 - 157,313,758 (+)NCBIGRCm39mm39
GRCm382157,423,906 - 157,471,838 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2157,418,444 - 157,471,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv372157,250,029 - 157,297,574 (+)NCBIGRCm37mm9NCBIm37
MGSCv362157,115,734 - 157,163,279 (+)NCBImm8
Celera2163,383,913 - 163,416,616 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.35NCBI
Src
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544519,215,161 - 19,228,695 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544519,213,210 - 19,227,670 (-)NCBIChiLan1.0ChiLan1.0
SRC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12034,822,287 - 34,841,523 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2034,822,271 - 34,839,634 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02033,667,614 - 33,727,126 (+)NCBIMhudiblu_PPA_v0panPan3
SRC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2425,999,048 - 26,018,077 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12425,982,499 - 26,019,748 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Src
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365613,826,802 - 3,844,406 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1740,471,009 - 40,524,860 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11740,470,970 - 40,524,862 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21745,907,305 - 45,942,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRC
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,344,480 - 26,367,448 (-)NCBI
ChlSab1.1 Ensembl226,343,450 - 26,367,776 (-)Ensembl
Src
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248422,212,561 - 2,260,514 (-)NCBI

Position Markers
BE110190  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.03153,593,895 - 153,594,081NCBIRnor6.0
Rnor_5.03158,125,236 - 158,125,422UniSTSRnor5.0
RGSC_v3.43148,170,282 - 148,170,468UniSTSRGSC3.4
Celera3144,843,282 - 144,843,468UniSTS
Cytogenetic Map3q42UniSTS
WI-14593  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.03153,581,062 - 153,582,367NCBIRnor6.0
Rnor_5.03158,136,949 - 158,138,254UniSTSRnor5.0
RGSC_v3.43148,157,449 - 148,158,754UniSTSRGSC3.4
Celera3144,830,449 - 144,831,754UniSTS
Cytogenetic Map3q42UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)330846101172879276Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3114376250159376250Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3138374177177699992Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3103141944170934860Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3148348517171467264Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3150368003177699992Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3136876155170935007Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)3103141814176418101Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)3103141814176418101Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3103141814176418101Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)381136227154416635Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3138374177177699992Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3129787213177699992Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)358204463170534769Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)3153412455170534769Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3128986468173986468Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3146232777177699992Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3153381237174632112Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)399465522168732722Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3125848628170848628Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3119471263164471263Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3153412455165355668Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3126575595165355668Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)343295930163640485Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)343295930163640485Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)348561928155263151Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3132875075176418101Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3102152812155263151Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3148348739163640325Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3147072047154807958Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3139578365177699992Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3153412455177699992Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3148034701177699992Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)361241033165369047Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3153381237174632112Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3153381237174632112Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3130006659175006659Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3153381237174632112Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3153381237174632112Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3153381237174632112Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3153381237174632112Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:110
Interacting mature miRNAs:121
Transcripts:ENSRNOT00000012739
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 11 10 12 10 74 35 39 11
Low 17 46 31 7 31 8 11 2 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF130457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF157016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ120509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ120510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012739   ⟹   ENSRNOP00000012739
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3153,580,869 - 153,593,765 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080516   ⟹   ENSRNOP00000071837
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3153,580,861 - 153,595,642 (+)Ensembl
RefSeq Acc Id: NM_031977   ⟹   NP_114183
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,124,715 - 146,137,986 (+)NCBI
Rnor_6.03153,580,869 - 153,594,137 (+)NCBI
Rnor_5.03158,123,674 - 158,171,912 (-)NCBI
RGSC_v3.43148,157,256 - 148,170,524 (+)RGD
Celera3144,830,256 - 144,843,524 (+)RGD
Sequence:
RefSeq Acc Id: XM_008762387   ⟹   XP_008760609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03153,560,483 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762388   ⟹   XP_008760610
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03153,560,483 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592065   ⟹   XP_017447554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,092,537 - 146,139,492 (+)NCBI
Rnor_6.03153,548,616 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592066   ⟹   XP_017447555
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,091,969 - 146,139,492 (+)NCBI
Rnor_6.03153,548,217 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592067   ⟹   XP_017447556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03153,547,807 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592068   ⟹   XP_017447557
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,095,810 - 146,139,492 (+)NCBI
Rnor_6.03153,551,574 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592069   ⟹   XP_017447558
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03153,548,616 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592070   ⟹   XP_017447559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03153,548,227 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592071   ⟹   XP_017447560
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,095,810 - 146,139,492 (+)NCBI
Rnor_6.03153,551,574 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592072   ⟹   XP_017447561
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03153,560,484 - 153,595,643 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105957   ⟹   XP_038961885
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,091,969 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105958   ⟹   XP_038961886
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,095,810 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105959   ⟹   XP_038961887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,092,537 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105960   ⟹   XP_038961888
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,095,810 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105961   ⟹   XP_038961889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,092,087 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105962   ⟹   XP_038961890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,091,969 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105963   ⟹   XP_038961891
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,114,301 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105964   ⟹   XP_038961892
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,092,558 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105965   ⟹   XP_038961893
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,092,105 - 146,139,492 (+)NCBI
RefSeq Acc Id: XM_039105966   ⟹   XP_038961894
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,091,969 - 146,139,492 (+)NCBI
Protein Sequences
Protein RefSeqs NP_114183 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447554 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447555 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447557 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447560 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961889 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961891 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961892 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961893 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961894 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD24180 (Get FASTA)   NCBI Sequence Viewer  
  AAF80335 (Get FASTA)   NCBI Sequence Viewer  
  AAZ23848 (Get FASTA)   NCBI Sequence Viewer  
  AAZ23849 (Get FASTA)   NCBI Sequence Viewer  
  EDL96675 (Get FASTA)   NCBI Sequence Viewer  
  EDL96676 (Get FASTA)   NCBI Sequence Viewer  
  EDL96677 (Get FASTA)   NCBI Sequence Viewer  
  EDL96678 (Get FASTA)   NCBI Sequence Viewer  
  EDL96679 (Get FASTA)   NCBI Sequence Viewer  
  EDL96680 (Get FASTA)   NCBI Sequence Viewer  
  EDL96681 (Get FASTA)   NCBI Sequence Viewer  
  Q9WUD9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_114183   ⟸   NM_031977
- UniProtKB: Q9WUD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008760610   ⟸   XM_008762388
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008760609   ⟸   XM_008762387
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447556   ⟸   XM_017592067
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447555   ⟸   XM_017592066
- Peptide Label: isoform X1
- UniProtKB: Q9WUD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447559   ⟸   XM_017592070
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447554   ⟸   XM_017592065
- Peptide Label: isoform X1
- UniProtKB: Q9WUD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447558   ⟸   XM_017592069
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447557   ⟸   XM_017592068
- Peptide Label: isoform X1
- UniProtKB: Q9WUD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447560   ⟸   XM_017592071
- Peptide Label: isoform X1
- UniProtKB: Q9WUD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447561   ⟸   XM_017592072
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000071837   ⟸   ENSRNOT00000080516
RefSeq Acc Id: ENSRNOP00000012739   ⟸   ENSRNOT00000012739
RefSeq Acc Id: XP_038961890   ⟸   XM_039105962
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961885   ⟸   XM_039105957
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961894   ⟸   XM_039105966
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038961889   ⟸   XM_039105961
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961893   ⟸   XM_039105965
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961887   ⟸   XM_039105959
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961892   ⟸   XM_039105964
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961886   ⟸   XM_039105958
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961888   ⟸   XM_039105960
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961891   ⟸   XM_039105963
- Peptide Label: isoform X1
Protein Domains
Protein kinase   SH2   SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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