Syp (synaptophysin) - Rat Genome Database

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Gene: Syp (synaptophysin) Mus musculus
Analyze
Symbol: Syp
Name: synaptophysin
RGD ID: 11373
MGI Page MGI
Description: Enables SH2 domain binding activity and identical protein binding activity. Involved in regulation of long-term neuronal synaptic plasticity; regulation of short-term neuronal synaptic plasticity; and regulation of synaptic vesicle priming. Located in several cellular components, including neuromuscular junction; presynaptic membrane; and synaptic vesicle membrane. Is active in Schaffer collateral - CA1 synapse and presynaptic active zone. Is expressed in several structures, including diaphragm; gut; nervous system; sensory organ; and skeletal muscle. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 96. Orthologous to human SYP (synaptophysin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A230093K24Rik; AI848995; BM89 antigen; major synaptic vesicle protein p38; p3; p38; RIKEN cDNA A230093K24 gene; S; Syn; Syp I
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,504,819 - 7,519,495 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,504,710 - 7,519,495 (+)EnsemblGRCm39 Ensembl
GRCm38X7,638,580 - 7,653,256 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,638,471 - 7,653,256 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,215,706 - 7,230,382 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,795,670 - 6,810,210 (+)NCBIMGSCv36mm8
CeleraX3,817,995 - 3,833,335 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinin  (EXP)
(+)-pilocarpine  (ISO)
(S)-amphetamine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-nitropropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (EXP,ISO)
9-cis-retinoic acid  (ISO)
abacavir  (ISO)
acetic acid  (EXP)
acrylamide  (ISO)
agomelatine  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aluminium sulfate (anhydrous)  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
Aroclor 1254  (ISO)
atorvastatin calcium  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bezafibrate  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bromochloroacetic acid  (EXP)
Butylparaben  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
cannabidiol  (EXP)
carbamazepine  (EXP)
carbon nanotube  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
CHIR 99021  (EXP)
chlorohydrocarbon  (ISO)
chloroquine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
citric acid  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyanocob(III)alamin  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
DDE  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP,ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dichlorine  (ISO)
dihydroactinidiolide  (EXP)
dimethylselenide  (ISO)
donepezil hydrochloride  (EXP)
enzacamene  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
fasudil  (ISO)
finasteride  (ISO)
fluoxetine  (EXP,ISO)
flutamide  (ISO)
folic acid  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
gamma-tocopherol  (EXP)
glucose  (ISO)
Honokiol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
hydroxyl  (ISO)
iron(2+) sulfate (anhydrous)  (ISO)
L-methionine  (EXP)
lactacystin  (ISO)
lead diacetate  (EXP,ISO)
lead tetraacetate  (EXP)
lead(0)  (EXP,ISO)
linuron  (ISO)
lipopolysaccharide  (ISO)
LY294002  (EXP)
melatonin  (ISO)
melittin  (EXP)
methamphetamine  (ISO)
methimazole  (ISO)
methylmercury chloride  (EXP,ISO)
Mipafox  (ISO)
Monobutylphthalate  (EXP)
N-acetyl-L-cysteine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-N-nitrosourea  (ISO)
naphthalene  (EXP,ISO)
nicotinic acid  (ISO)
oxidopamine  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraoxon  (ISO)
paraquat  (ISO)
parathion  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenytoin  (EXP)
physostigmine  (EXP)
pirinixic acid  (EXP,ISO)
poly(vinylpyrrolidone)  (EXP)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
prochloraz  (ISO)
procymidone  (ISO)
Pyridostigmine bromide  (EXP)
pyrimidifen  (ISO)
pyrrolidine dithiocarbamate  (ISO)
resveratrol  (EXP,ISO)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 415286  (ISO)
scopolamine  (EXP,ISO)
sevoflurane  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
silver(1+) nitrate  (EXP)
sodium fluoride  (EXP,ISO)
streptozocin  (EXP,ISO)
styrene oxide  (EXP)
sulfadimethoxine  (ISO)
sulfur dioxide  (ISO)
sulindac  (ISO)
tadalafil  (EXP)
telmisartan  (EXP,ISO)
terbufos  (ISO)
thioacetamide  (EXP)
thyroxine  (EXP)
titanium dioxide  (EXP)
tocopherol  (EXP)
trichlorfon  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
U-73122  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
valsartan  (EXP,ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)
WIN 55212-2  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse. Brunkow ME, etal., Nat Genet 2001 Jan;27(1):68-73.
2. Changed clathrin regulatory proteins in the brains of Alzheimer's disease patients and animal models. Cao Y, etal., J Alzheimers Dis. 2010;22(1):329-42. doi: 10.3233/JAD-2010-100162.
3. Pantophysin is a ubiquitously expressed synaptophysin homologue and defines constitutive transport vesicles. Haass NK, etal., J Cell Biol 1996 Aug;134(3):731-46.
4. Sex-dependent influence of chronic mild stress (CMS) on voluntary alcohol consumption; study of neurobiological consequences. Marco EM, etal., Pharmacol Biochem Behav. 2017 Jan;152:68-80. doi: 10.1016/j.pbb.2016.11.005. Epub 2016 Nov 25.
5. A transcript map of a 2-Mb BAC contig in the proximal portion of the mouse X chromosome and regional mapping of the scurfy mutation. Means GD, etal., Genomics 2000 May 1;65(3):213-23.
6. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. MGD IEA MGD IEA
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Nucleotide polymorphism and natural selection at the pantophysin (Pan I) locus in the Atlantic cod, Gadus morhua (L.). Pogson GH Genetics 2001 Jan;157(1):317-30.
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1975480   PMID:7553862   PMID:7628695   PMID:7671305   PMID:8264620   PMID:8530041   PMID:8581936   PMID:8643476   PMID:8653788   PMID:8662827   PMID:8717339   PMID:8738414  
PMID:8889548   PMID:8903359   PMID:8921395   PMID:9088571   PMID:9126746   PMID:9184108   PMID:9210520   PMID:9303529   PMID:9364068   PMID:9364238   PMID:9584121   PMID:9648883  
PMID:9705223   PMID:9730605   PMID:9736654   PMID:9882498   PMID:9883720   PMID:10349636   PMID:10398046   PMID:10493740   PMID:10531433   PMID:10595519   PMID:10615047   PMID:10655525  
PMID:10707974   PMID:10711712   PMID:10712642   PMID:10719886   PMID:10873387   PMID:10972938   PMID:10995443   PMID:11018052   PMID:11042159   PMID:11076861   PMID:11077193   PMID:11086296  
PMID:11217851   PMID:11312300   PMID:11389829   PMID:11395002   PMID:11414789   PMID:11739954   PMID:11744253   PMID:11753414   PMID:11792847   PMID:11807832   PMID:11814407   PMID:11879655  
PMID:12074840   PMID:12089526   PMID:12103442   PMID:12115694   PMID:12133826   PMID:12202822   PMID:12271488   PMID:12368914   PMID:12372284   PMID:12403715   PMID:12441053   PMID:12458206  
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PMID:15371519   PMID:15389796   PMID:15489334   PMID:15509552   PMID:15529118   PMID:15548585   PMID:15554711   PMID:15653467   PMID:15748150   PMID:15813942   PMID:15836626   PMID:15862624  
PMID:15920476   PMID:15935055   PMID:15944126   PMID:16141072   PMID:16141073   PMID:16186258   PMID:16203963   PMID:16223892   PMID:16330151   PMID:16374801   PMID:16387638   PMID:16407767  
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PMID:18621483   PMID:18652896   PMID:18665422   PMID:18685098   PMID:18706977   PMID:18776950   PMID:18799693   PMID:18830404   PMID:18832390   PMID:18854036   PMID:19022256   PMID:19081073  
PMID:19091986   PMID:19092805   PMID:19100728   PMID:19131512   PMID:19221030   PMID:19244212   PMID:19345204   PMID:19357271   PMID:19386237   PMID:19393300   PMID:19398581   PMID:19474391  
PMID:19506089   PMID:19509342   PMID:19544586   PMID:19549527   PMID:19565669   PMID:19625254   PMID:19631635   PMID:19633665   PMID:19635472   PMID:19635813   PMID:19680541   PMID:19717447  
PMID:19723784   PMID:19726636   PMID:19884655   PMID:19926856   PMID:20058045   PMID:20085810   PMID:20114047   PMID:20148032   PMID:20152127   PMID:20203623   PMID:20235171   PMID:20410110  
PMID:20498043   PMID:20519520   PMID:20547133   PMID:20624980   PMID:20648571   PMID:20651837   PMID:20706633   PMID:20817066   PMID:20826656   PMID:20881139   PMID:21041412   PMID:21190592  
PMID:21228161   PMID:21267068   PMID:21278733   PMID:21295146   PMID:21305030   PMID:21307259   PMID:21347244   PMID:21423666   PMID:21464123   PMID:21518694   PMID:21559374   PMID:21589880  
PMID:21645620   PMID:21658579   PMID:21664258   PMID:21752992   PMID:21832185   PMID:21873635   PMID:21878906   PMID:21884692   PMID:21903923   PMID:21954064   PMID:21957264   PMID:22065950  
PMID:22124272   PMID:22200709   PMID:22213797   PMID:22293606   PMID:22406641   PMID:22575789   PMID:22627288   PMID:22687584   PMID:22745484   PMID:22794259   PMID:22822464   PMID:22908222  
PMID:22980982   PMID:23103965   PMID:23227180   PMID:23418567   PMID:23457538   PMID:23474986   PMID:23562608   PMID:23585229   PMID:23610558   PMID:23620512   PMID:23704327   PMID:23897647  
PMID:23966691   PMID:23986251   PMID:24001577   PMID:24086156   PMID:24095980   PMID:24124534   PMID:24276495   PMID:24327562   PMID:24448406   PMID:24613359   PMID:24694561   PMID:24732777  
PMID:24790209   PMID:25007825   PMID:25063451   PMID:25118614   PMID:25133820   PMID:25135772   PMID:25218043   PMID:25232112   PMID:25338097   PMID:25438880   PMID:25542768   PMID:25581363  
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PMID:26880306   PMID:26940434   PMID:26972007   PMID:27052163   PMID:27052164   PMID:27223325   PMID:27256505   PMID:27292642   PMID:27466379   PMID:27480238   PMID:27562628   PMID:27648578  
PMID:27713690   PMID:27800545   PMID:27816769   PMID:27916092   PMID:28069946   PMID:28344592   PMID:28348167   PMID:28370415   PMID:28450540   PMID:28551284   PMID:28555889   PMID:28576773  
PMID:28598330   PMID:28623327   PMID:28803787   PMID:28811488   PMID:28827394   PMID:28831123   PMID:28864826   PMID:28887151   PMID:29056747   PMID:29180744   PMID:29323161   PMID:29350434  
PMID:29386106   PMID:29490264   PMID:29507213   PMID:29922981   PMID:30113308   PMID:30185604   PMID:30206360   PMID:30227424   PMID:30232223   PMID:30318414   PMID:30456369   PMID:30562941  
PMID:30578339   PMID:30661759   PMID:30692166   PMID:30735130   PMID:30862809   PMID:30870413   PMID:30872276   PMID:30912742   PMID:30976911   PMID:30992372   PMID:31065682   PMID:31090538  
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PMID:31940485   PMID:31944180   PMID:32071204   PMID:32142630   PMID:32146512   PMID:32165492   PMID:32221352   PMID:32325033   PMID:32553121   PMID:32553155   PMID:32558157   PMID:32659913  
PMID:32668405   PMID:33082323   PMID:33431828   PMID:33664131   PMID:33769286   PMID:34040028   PMID:34108486   PMID:34455539   PMID:34496937   PMID:34599305   PMID:34620845   PMID:34799629  
PMID:34848499   PMID:35259752   PMID:35288551   PMID:35303432   PMID:35496908   PMID:35577801   PMID:36067731   PMID:36168290   PMID:36293380   PMID:36417873   PMID:36517477   PMID:36549270  
PMID:36808153   PMID:37142655   PMID:37192624   PMID:37307456   PMID:37416774   PMID:37686246   PMID:37758766   PMID:37870650   PMID:37963393   PMID:38062045   PMID:38206094   PMID:38227057  
PMID:38308620   PMID:38320000   PMID:38355793   PMID:38367882   PMID:38736483   PMID:38830762   PMID:38838737   PMID:39307290   PMID:39367406   PMID:39383220  


Genomics

Comparative Map Data
Syp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,504,819 - 7,519,495 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,504,710 - 7,519,495 (+)EnsemblGRCm39 Ensembl
GRCm38X7,638,580 - 7,653,256 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,638,471 - 7,653,256 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X7,215,706 - 7,230,382 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,795,670 - 6,810,210 (+)NCBIMGSCv36mm8
CeleraX3,817,995 - 3,833,335 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.44NCBI
SYP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,187,815 - 49,200,193 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,187,815 - 49,200,218 (-)EnsemblGRCh38hg38GRCh38
GRCh37X49,044,268 - 49,056,652 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,931,209 - 48,943,605 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X48,800,635 - 48,813,032NCBI
CeleraX52,607,708 - 52,620,104 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,701,336 - 46,713,608 (-)NCBIHuRef
CHM1_1X49,076,586 - 49,088,982 (-)NCBICHM1_1
T2T-CHM13v2.0X48,599,669 - 48,612,053 (-)NCBIT2T-CHM13v2.0
Syp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,521,348 - 17,536,449 (-)NCBIGRCr8
mRatBN7.2X14,849,444 - 14,864,553 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,849,444 - 14,864,745 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,663,795 - 19,678,920 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,404,212 - 20,419,339 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,669,360 - 16,684,482 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,694,699 - 15,709,244 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,695,566 - 15,707,436 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,485,963 - 16,501,050 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,890,307 - 26,905,319 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X26,943,775 - 26,958,788 (-)NCBI
CeleraX14,932,808 - 14,947,852 (-)NCBICelera
Cytogenetic MapXq12NCBI
Syp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543675,294 - 689,686 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955543675,294 - 689,579 (-)NCBIChiLan1.0ChiLan1.0
SYP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,679,395 - 50,691,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,682,774 - 50,695,257 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,487,538 - 41,500,039 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,340,021 - 49,352,420 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,340,021 - 49,352,420 (-)Ensemblpanpan1.1panPan2
SYP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,288,071 - 42,301,802 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,288,148 - 42,299,487 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,666,206 - 16,678,233 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,429,161 - 42,441,205 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,429,165 - 42,441,152 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,413,127 - 42,425,154 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,400,777 - 42,412,809 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,495,540 - 42,507,567 (-)NCBIUU_Cfam_GSD_1.0
Syp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,821,818 - 34,835,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,062,217 - 1,075,988 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,062,206 - 1,075,935 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,232,192 - 43,246,680 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,232,190 - 43,246,764 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,080,132 - 48,094,682 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,287,610 - 46,299,926 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,287,282 - 46,299,773 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,848,275 - 11,860,485 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893928,099 - 942,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893929,460 - 942,806 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Syp
393 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2046
Count of miRNA genes:736
Interacting mature miRNAs:944
Transcripts:ENSMUST00000069520, ENSMUST00000128890, ENSMUST00000134355, ENSMUST00000137515, ENSMUST00000149795, ENSMUST00000150572
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse

Markers in Region
DXImx21  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,645,663 - 7,645,823UniSTSGRCm38
MGSCv37X7,222,789 - 7,222,949UniSTSGRCm37
CeleraX3,825,642 - 3,825,802UniSTS
Cytogenetic MapXA-DUniSTS
cM MapX UniSTS
X95818  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,651,932 - 7,652,130UniSTSGRCm38
MGSCv37X7,229,058 - 7,229,256UniSTSGRCm37
CeleraX3,819,192 - 3,819,390UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic MapXA-DUniSTS
Whitehead_YACX UniSTS
UniSTS:237994  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,652,123 - 7,652,332UniSTSGRCm38
MGSCv37X7,229,249 - 7,229,458UniSTSGRCm37
CeleraX3,818,990 - 3,819,199UniSTS
Cytogenetic MapXA-DUniSTS
Cytogenetic MapXA1.1UniSTS
AI848995  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,652,852 - 7,653,000UniSTSGRCm38
MGSCv37X7,229,978 - 7,230,126UniSTSGRCm37
Cytogenetic MapXA-DUniSTS
Cytogenetic MapXA1.1UniSTS
Whitehead/MRC_RHX40.04UniSTS
Syp  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X7,229,620 - 7,229,975UniSTSGRCm37
Cytogenetic MapXA-DUniSTS
cM MapX1.5UniSTS
GDB:216846  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,648,552 - 7,648,892UniSTSGRCm38
MGSCv37X7,225,678 - 7,226,018UniSTSGRCm37
CeleraX3,822,442 - 3,822,782UniSTS
Cytogenetic MapXA-DUniSTS
Syp  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X7,652,494 - 7,652,849UniSTSGRCm38
MGSCv37X7,229,620 - 7,229,975UniSTSGRCm37
Cytogenetic MapXA1.1UniSTS
Cytogenetic MapXA-DUniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000069520   ⟹   ENSMUSP00000069429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,504,710 - 7,519,495 (+)Ensembl
GRCm38.p6 EnsemblX7,638,471 - 7,653,256 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128890   ⟹   ENSMUSP00000118544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,504,961 - 7,510,533 (+)Ensembl
GRCm38.p6 EnsemblX7,638,722 - 7,644,294 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,510,148 - 7,511,272 (+)Ensembl
GRCm38.p6 EnsemblX7,643,909 - 7,645,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,506,000 - 7,510,481 (+)Ensembl
GRCm38.p6 EnsemblX7,639,761 - 7,644,242 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,504,877 - 7,513,608 (+)Ensembl
GRCm38.p6 EnsemblX7,638,638 - 7,647,369 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX7,505,544 - 7,510,522 (+)Ensembl
GRCm38.p6 EnsemblX7,639,305 - 7,644,283 (+)Ensembl
RefSeq Acc Id: NM_009305   ⟹   NP_033331
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X7,504,819 - 7,519,495 (+)NCBI
GRCm38X7,638,580 - 7,653,256 (+)ENTREZGENE
MGSCv37X7,215,706 - 7,230,382 (+)RGD
CeleraX3,817,995 - 3,833,335 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033331   ⟸   NM_009305
- UniProtKB: Q8BRQ0 (UniProtKB/Swiss-Prot),   Q91WI8 (UniProtKB/Swiss-Prot),   Q62277 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000118544   ⟸   ENSMUST00000128890
Ensembl Acc Id: ENSMUSP00000069429   ⟸   ENSMUST00000069520
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62277-F1-model_v2 AlphaFold Q62277 1-314 view protein structure

Promoters
RGD ID:6846417
Promoter ID:MM_KWN:59414
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   ES_Cell
Transcripts:ENSMUST00000069520,   ENSMUST00000116638,   OTTMUST00000043003,   OTTMUST00000043004,   OTTMUST00000043005,   OTTMUST00000043006
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,215,416 - 7,215,916 (+)MPROMDB
RGD ID:6846418
Promoter ID:MM_KWN:59415
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000043007
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X7,220,776 - 7,221,276 (+)MPROMDB
RGD ID:13679976
Promoter ID:EPDNEW_M24137
Type:initiation region
Name:Syp_1
Description:Mus musculus synaptophysin , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X7,638,684 - 7,638,744EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98467 AgrOrtholog
Ensembl Genes ENSMUSG00000031144 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069520 ENTREZGENE
  ENSMUST00000069520.11 UniProtKB/Swiss-Prot
  ENSMUST00000128890.2 UniProtKB/TrEMBL
InterPro Marvel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptophysin/porin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20977 UniProtKB/Swiss-Prot
MGD MGI:98467 ENTREZGENE
NCBI Gene 20977 ENTREZGENE
PANTHER PTHR10306 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10306:SF10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syp PhenoGen
PRINTS SYNAPTOPHYSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A4FUR8_MOUSE UniProtKB/TrEMBL
  F6VR28_MOUSE UniProtKB/TrEMBL
  Q62277 ENTREZGENE
  Q8BRQ0 ENTREZGENE
  Q91WI8 ENTREZGENE
  SYPH_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BRQ0 UniProtKB/Swiss-Prot
  Q91WI8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Syp  synaptophysin  A230093K24Rik  RIKEN cDNA A230093K24 gene  Data merged from RGD:1609946 737654 PROVISIONAL