Atp6v0d1 (ATPase H+ transporting V0 subunit D1)

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Gene: Atp6v0d1 (ATPase H+ transporting V0 subunit D1) Rattus norvegicus

Analyze

Symbol:

Atp6v0d1

Name:

ATPase H+ transporting V0 subunit D1

RGD ID:

1306159

Description:

Predicted to have proton-transporting ATPase activity, rotational mechanism. Involved in brain development. Localizes to several cellular components, including apical plasma membrane; axon terminus; and synaptic vesicle. Predicted to colocalize with centrosome. Orthologous to human ATP6V0D1 (ATPase H+ transporting V0 subunit d1); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dinitrotoluene; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Ac39; ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1; ATPase, H+ transporting, lysosomal V0 subunit D1; ATPase, H+ transporting, V0 subunit D; ATPase, H+ transporting, V0 subunit D isoform 1; LOC291969; physophilin; V-type proton ATPase subunit d 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP6V0D1 (ATPase H+ transporting V0 subunit d1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Atp6v0d1 (ATPase, H+ transporting, lysosomal V0 subunit D1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Atp6v0d1 (ATPase H+ transporting V0 subunit d1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP6V0D1 (ATPase H+ transporting V0 subunit d1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP6V0D1 (ATPase H+ transporting V0 subunit d1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atp6v0d1 (ATPase H+ transporting V0 subunit d1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP6V0D1 (ATPase H+ transporting V0 subunit d1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ATP6V0D1 (ATPase H+ transporting V0 subunit d1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp6v0d1 (ATPase H+ transporting V0 subunit d1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ATP6V0D1 (ATPase H+ transporting V0 subunit d1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Atp6v0d1 (ATPase, H+ transporting, lysosomal V0 subunit D1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	atp6v0d1 (ATPase H+ transporting V0 subunit d1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	VMA6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	VhaAC39-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	VhaAC39-2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	vha-16	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	33,403,352 - 33,447,357 (-)	NCBI
Rnor_6.0 Ensembl	19	37,481,782 - 37,525,762 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	37,481,782 - 37,525,762 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	48,347,540 - 48,391,661 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,342,041 - 35,386,025 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	35,346,923 - 35,390,906 (-)	NCBI
Celera	19	32,831,706 - 32,875,649 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acetylsalicylic acid (ISO)

aconitine (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

captan (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

clofibrate (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

glycochenodeoxycholic acid (ISO)

indometacin (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

N-acetyl-L-cysteine (ISO)

ozone (ISO)

rifampicin (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sunitinib (ISO)

trichostatin A (ISO)

Triptolide (EXP)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Yessotoxin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEP)

cellular iron ion homeostasis (ISO)

cellular response to increased oxygen levels (ISO)

proton transmembrane transport (IEA)

vacuolar acidification (IBA)

vacuolar transport (IBA)

Cellular Component

apical plasma membrane (IDA)

axon terminus (IDA)

centrosome (ISO)

early endosome (IBA,ISO)

lysosomal membrane (IBA)

membrane (ISO)

neuron projection (IDA)

plasma membrane proton-transporting V-type ATPase complex (IBA)

protein-containing complex (IDA)

proton-transporting V-type ATPase, V0 domain (IEA)

synaptic vesicle (IDA)

vacuolar proton-transporting V-type ATPase complex (IBA,ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (IPI)

proton-transporting ATPase activity, rotational mechanism (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

oxidative phosphorylation pathway (IEA)

phagocytosis pathway (IEA)

rheumatoid arthritis pathway (IEA)

tuberculosis pathway (IEA)

References

References - curated


1.	Carrion-Vazquez M, etal., Eur J Neurosci. 1998 Mar;10(3):1153-66.
2.	Galli T, etal., J Biol Chem. 1996 Jan 26;271(4):2193-8.
3.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	KEGG
5.	MGD data from the GO Consortium
6.	Pietrement C, etal., Biol Reprod. 2006 Jan;74(1):185-94. Epub 2005 Sep 28.
7.	Pipeline to import KEGG annotations from KEGG into RGD
8.	RGD automated data pipeline
9.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	RGD automated import pipeline for gene-chemical interactions
11.	Siebert A, etal., J Biol Chem. 1994 Nov 11;269(45):28329-34.

Additional References at PubMed

PMID:9670047	PMID:12477932	PMID:12527205	PMID:17897319	PMID:18752060	PMID:19056867	PMID:19199708	PMID:21844891	PMID:23376485	PMID:23533145	PMID:25002582	PMID:28296633

Genomics

Comparative Map Data

Atp6v0d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	33,403,352 - 33,447,357 (-)	NCBI
Rnor_6.0 Ensembl	19	37,481,782 - 37,525,762 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	37,481,782 - 37,525,762 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	48,347,540 - 48,391,661 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	35,342,041 - 35,386,025 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	35,346,923 - 35,390,906 (-)	NCBI
Celera	19	32,831,706 - 32,875,649 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

ATP6V0D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	67,438,014 - 67,481,181 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	67,438,019 - 67,481,157 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	67,471,922 - 67,515,060 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	66,029,418 - 66,072,590 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	16	66,029,425 - 66,072,589	NCBI
Celera	16	51,980,121 - 52,023,291 (-)	NCBI
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,345,066 - 53,388,217 (-)	NCBI		HuRef
CHM1_1	16	68,879,298 - 68,922,471 (-)	NCBI		CHM1_1

Atp6v0d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,251,093 - 106,292,696 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	106,251,097 - 106,292,679 (-)	Ensembl
GRCm38	8	105,524,461 - 105,566,064 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,524,465 - 105,566,047 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	108,048,370 - 108,089,940 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	108,413,599 - 108,455,169 (-)	NCBI			mm8
Celera	8	109,747,720 - 109,789,272 (-)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI

Atp6v0d1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	9,167,439 - 9,206,193 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	9,167,439 - 9,206,193 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATP6V0D1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	67,171,883 - 67,214,670 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,171,883 - 67,214,670 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	47,783,327 - 47,826,138 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ATP6V0D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,926,589 - 81,965,959 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,926,612 - 81,965,526 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,916,255 - 81,955,624 (+)	NCBI
ROS_Cfam_1.0	5	82,361,885 - 82,401,257 (+)	NCBI
UMICH_Zoey_3.1	5	82,188,035 - 82,227,401 (+)	NCBI
UNSW_CanFamBas_1.0	5	81,869,135 - 81,908,503 (+)	NCBI
UU_Cfam_GSD_1.0	5	82,512,585 - 82,551,949 (+)	NCBI

Atp6v0d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,661,672 - 41,700,328 (+)	NCBI
SpeTri2.0	NW_004936475	17,888,788 - 17,927,513 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP6V0D1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,090,181 - 28,131,985 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	28,090,180 - 28,132,080 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	25,357,269 - 25,399,102 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP6V0D1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,976,118 - 60,018,414 (+)	NCBI
ChlSab1.1 Ensembl	5	60,002,544 - 60,017,894 (+)	Ensembl

Atp6v0d1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	18,828,025 - 18,883,128 (+)	NCBI

Position Markers

RH94762

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	19	37,527,106 - 37,527,208	NCBI	Rnor6.0
Rnor_5.0	19	48,393,005 - 48,393,107	UniSTS	Rnor5.0
RGSC_v3.4	19	35,387,369 - 35,387,471	UniSTS	RGSC3.4
Celera	19	32,877,022 - 32,877,124	UniSTS
Cytogenetic Map	19	q11	UniSTS

Atp6e

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	19	37,481,894 - 37,482,065	NCBI	Rnor6.0
Rnor_5.0	19	48,347,652 - 48,347,823	UniSTS	Rnor5.0
RGSC_v3.4	19	35,342,153 - 35,342,324	UniSTS	RGSC3.4
Celera	19	32,831,818 - 32,831,989	UniSTS
Cytogenetic Map	19	q11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	38221845	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	38221845	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	38221845	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	38221845	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	1044648	46044648	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	1957707	46957707	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2432963	47217667	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2432963	62275575	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	3701835	48701835	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	3701835	48701835	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	5007571	43907843	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	6506761	60220581	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	8072545	47318201	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	11303927	47879277	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15939528	38798459	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	17028003	52538299	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	18993982	62275575	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	19177495	62275575	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	21407787	62275575	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	24455726	43907843	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	24818257	62275575	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	31194301	41686140	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	31194301	41686140	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	31194301	41686140	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	32994392	62275575	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	353
Count of miRNA genes:	209
Interacting mature miRNAs:	238
Transcripts:	ENSRNOT00000023606
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000023606 ⟹ ENSRNOP00000023606

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	37,481,782 - 37,525,762 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092910 ⟹ ENSRNOP00000076059

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	37,486,670 - 37,525,733 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000092990

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	37,487,510 - 37,496,510 (-)	Ensembl

RefSeq Acc Id:

NM_001011927 ⟹ NP_001011927

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,403,355 - 33,447,335 (-)	NCBI
Rnor_6.0	19	37,481,782 - 37,525,762 (-)	NCBI
Rnor_5.0	19	48,347,540 - 48,391,661 (-)	NCBI
RGSC_v3.4	19	35,342,041 - 35,386,025 (-)	RGD
Celera	19	32,831,706 - 32,875,649 (-)	RGD

Sequence:

show sequence

CGCGTCAGCTGATCCCCCGAGTCGAGTTGCGTGCGGGCAGATCGGGGCTATCTGGTCCCGCCGC
CCCCGCCGCAGCCATGTCGTTCTTCCCGGAGCTTTATTTCAACGTGGACAATGGCTACTTGGAG
GGATTAGTGCGCGGCCTGAAGGCCGGGGTGCTCAGCCAGGCGGACTACCTCAACCTGGTGCAGT
GCGAGACGCTCGAGGACTTGAAACTGCACCTGCAGAGTACAGATTATGGCAACTTCCTGGCCAA
TGAAGCGTCACCTCTGACGGTGTCAGTCATCGATGACAAGCTCAAGGAGAAGATGGTAGTAGAG
TTCCGCCACATGAGAAACCATGCCTACGAGCCACTTGCCAGCTTCCTGGACTTCATTACTTACA
GCTACATGATTGACAACGTGATCCTGCTCATCACGGGCACACTGCACCAGCGTTCAATAGCTGA
ACTTGTGCCCAAGTGCCATCCGCTAGGCAGTTTTGAGCAGATGGAGGCTGTGAACATCGCACAG
ACACCCGCAGAGCTCTACAATGCCATTCTGGTGGACACGCCCCTGGCGGCTTTTTTCCAGGACT
GCATCTCAGAGCAGGACCTTGATGAGATGAACATTGAGATAATCCGAAACACGCTTTACAAGGC
TTATCTGGAGTCCTTCTACAAGTTCTGTACTCTGTTAGGGGGAACCACAGCTGATGCCATGTGT
CCTATCCTAGAGTTTGAAGCAGATCGCCGAGCTTTCATCATCACCATCAACTCTTTCGGCACAG
AGCTTTCCAAGGAGGACCGTGCCAAGCTCTTTCCACACTGTGGCCGACTCTACCCTGAGGGCTT
GGCTCAGCTGGCTCGGGCTGATGACTATGAACAGGTCAAGAATGTAGCTGATTACTACCCGGAA
TACAAACTGCTTTTTGAGGGTGCAGGTAGCAATCCTGGAGACAAGACCCTGGAGGACCGATTCT
TTGAACATGAGGTGAAGCTGAACAAGCTGGCCTTCCTGAACCAGTTCCACTTTGGTGTCTTTTA
TGCCTTTGTGAAGCTTAAGGAACAGGAATGTCGCAACATTGTGTGGATTGCTGAGTGCATTGCC
CAGCGCCATCGCGCCAAGATCGACAACTATATCCCCATCTTCTAGAGTTCCGACTTAAGGTTCC
CAAGTGCACTGTGTGTGTCTGTGTGCTGTGGTGAAGCCTCTGGCTCACTTGTCTGACTTGGTGA
GGTGTAGCACATTGCCCTGGGATTGGTTGCCCAGCTTCCATGACCCCCTCGGGACTGCTCATAG
GTCTAAAAAGAGTTAGGCACCTTTCCCCTGATCAAGAATGGACCAAGATCCCCTCTAGAGCAAA
GAGGCCCCCCAGCCCTATGTTTACAGCCACTGACATGTCTAAGAAACTGTGTGACTTTTATGTC
CCTCCCTAACCTGAGAACCCTGGGGACAGCTTCCTTTCCTGTCCTTAGGTCATTCCCAGAACCA
TGACCTGTGGGAAAAATAGAGAATATGTATTCTTGGGGTATTGGGAAAGCAGCTTTGCAGCCCT
CTCCCTCAGCTCTGCCCCTCTGAGACAATAAAATTGCCCTCTTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039097616 ⟹ XP_038953544

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	33,403,352 - 33,447,357 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011927	(Get FASTA)	NCBI Sequence Viewer
	XP_038953544	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88462	(Get FASTA)	NCBI Sequence Viewer
	EDL92381	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001011927 ⟸ NM_001011927

- UniProtKB:

Q5M7T6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASP
LTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPK
CHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLES
FYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLA
RADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVK
LKEQECRNIVWIAECIAQRHRAKIDNYIPIF

hide sequence

RefSeq Acc Id:

ENSRNOP00000023606 ⟸ ENSRNOT00000023606

RefSeq Acc Id:

ENSRNOP00000076059 ⟸ ENSRNOT00000092910

RefSeq Acc Id:	XP_038953544 ⟸ XM_039097616
- Peptide Label:	isoform X1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701102

Promoter ID:

EPDNEW_R11603

Type:

initiation region

Name:

Atp6v0d1_1

Description:

ATPase H+ transporting V0 subunit D1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	37,525,756 - 37,525,816	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306159	AgrOrtholog
Ensembl Genes	ENSRNOG00000017235	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000023606	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000076059	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023606	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000092910	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1690.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7127604	IMAGE-MGC_LOAD
InterPro	ATPase_su_C-like	UniProtKB/TrEMBL
	ATPase_V0-cplx_dsu	UniProtKB/TrEMBL
	ATPase_V0/A0-cplx_csu/dsu	UniProtKB/TrEMBL
	V-type_ATPase_suC	UniProtKB/TrEMBL
KEGG Report	rno:291969	UniProtKB/TrEMBL
MGC_CLONE	MGC:95115	IMAGE-MGC_LOAD
NCBI Gene	291969	ENTREZGENE
PANTHER	PTHR11028	UniProtKB/TrEMBL
Pfam	vATP-synt_AC39	UniProtKB/TrEMBL
PhenoGen	Atp6v0d1	PhenoGen
PIRSF	V-ATP_synth_D	UniProtKB/TrEMBL
Superfamily-SCOP	ATPase_V0/A0_c/d	UniProtKB/TrEMBL
UniProt	A0A1B0GWX7_RAT	UniProtKB/TrEMBL
	Q5M7T6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-18	Atp6v0d1	ATPase H+ transporting V0 subunit D1	Atp6v0d1	ATPase, H+ transporting, lysosomal V0 subunit D1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-04-27	Atp6v0d1	ATPase, H+ transporting, lysosomal V0 subunit D1	Atp6v0d1	ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Atp6v0d1	ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1	Atp6v0d1	ATPase, H+ transporting, lysosomal V0 subunit D1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Atp6v0d1	ATPase, H+ transporting, lysosomal V0 subunit D1	Atp6v0d1	ATPase, H+ transporting, V0 subunit D isoform 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Atp6v0d1	ATPase, H+ transporting, V0 subunit D isoform 1	Atp6v0d1_predicted	ATPase, H+ transporting, V0 subunit D isoform 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Atp6v0d1_predicted	ATPase, H+ transporting, V0 subunit D isoform 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)