Rf59 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Rf59 (Renal function QTL 59) Rattus norvegicus

Symbol: Rf59
Name: Renal function QTL 59
RGD ID: 5686842
Previously known as: Rf-3_b
Trait: urine albumin amount   (VT:0002871)    
Measurement Type: urine albumin excretion rate   (CMO:0000757)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,069,424 - 146,976,080RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.03147,072,047 - 154,807,958RGD_MAPPER_PIPELINERnor6.0
Rnor_5.03153,428,179 - 160,798,463RGDRnor5.0
RGSC_v3.43141,890,118 - 149,038,578RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: ACI.FHH-(D1Mit18-D1Rat90)(D3Got102-D3Got149)(D14Mit11-D14Rat33)(D14Rat65-D14Rat90)/Mcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
Albuminuria  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method
fluorometry  (IDA)

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Refined mapping of the renal failure RF-3 quantitative trait locus. O'Meara CC, etal., J Am Soc Nephrol. 2011 Mar;22(3):518-25. Epub 2010 Dec 2.
Related QTLs

Related QTL Description Reference
Albq5_m maps to syntenic region RGD:5684423


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1307709Sdcbp2syndecan binding protein 23140060746140098063Rat
1305867Snphsyntaphilin3140098540140139342Rat
41000018Snphl1syntaphilin like 13140136868140139247Rat
41292422Anp32e-ps1acidic nuclear phosphoprotein 32 family member E, pseudogene 13140155661140159968Rat
1587557Rad21l1RAD21 cohesin complex component like 13140160128140188324Rat
2323360Tmem74bostransmembrane 74B, opposite strand3140197773140204953Rat
1564048Tmem74btransmembrane protein 74B3140219592140224208Rat
1587528Psmf1proteasome inhibitor subunit 13140235371140260546Rat
2323164Hnrnph1-ps2heterogeneous nuclear ribonucleoprotein H1, pseudogene 23140311910140336606Rat
1563415Rspo4R-spondin 43140357256140391780Rat
41337677LOC120101753uncharacterized LOC1201017533140405557140414036Rat
1307539Angpt4angiopoietin 43140420389140454213Rat
1308904Fam110afamily with sequence similarity 110, member A3140474484140485074Rat
40982723LOC120101754uncharacterized LOC1201017543140478638140482705Rat
11433440Rps29-ps15ribosomal protein S29, pseudogene 153140488269140488605Rat
1304644Slc52a3solute carrier family 52 member 33140498924140515845Rat
41060366LOC120101756uncharacterized LOC1201017563140515978140541284Rat
1564796Scrt2scratch family transcriptional repressor 23140581336140595273Rat
1307332Srxn1sulfiredoxin 13140604490140610050Rat
1308464Tcf15transcription factor 153140638984140644766Rat
621663Csnk2a1casein kinase 2 alpha 13140709984140756757Rat
1303293Tbc1d20TBC1 domain family, member 203140768537140787010Rat
708404Rbck1RANBP2-type and C3HC4-type zinc finger containing 13140789079140806017Rat
708432Trib3tribbles pseudokinase 33140809634140815230Rat
1586322Nrsn2neurensin 23140838813140847291Rat
1586313Sox12SRY-box transcription factor 123140859499140860518Rat
1585203Zcchc3zinc finger CCHC-type containing 33140872460140875292Rat
1559448C3h20orf96similar to human chromosome 20 open reading frame 963140876987140907711Rat
1560097Defb23defensin beta 233140923474140927715Rat
1565177Defb20defensin beta 203140948108140950907Rat
708352Defb22defensin beta 223140957093140961373Rat
1564413Defb26defensin beta 263140977214140980949Rat
1565792Defb28defensin beta 283140988032140993767Rat
6493921Rps10-ps1ribosomal protein S10, pseudogene 13140996660140997392Rat
1564030Defb29defensin beta 293141004098141009379Rat
1561746Defb19defensin beta 193141030332141037979Rat
1562393Defb21defensin beta 213141042810141044228Rat
1559541Defb24defensin beta 243141046571141052706Rat
1589571Defb27defensin beta 273141065135141068767Rat
1564902Defb36defensin beta 363141078001141086832Rat
1564765Defb25defensin beta 253141098813141099752Rat
1306560Rem1RRAD and GEM like GTPase 13141103722141112206Rat
7651008LOC102553281uncharacterized LOC1025532813141107781141145711Rat
1308946Hm13histocompatibility minor 133141145792141183557Rat
1591127Mcts2MCTS family member 23141163330141164108Rat
2858Id1inhibitor of DNA binding 13141210666141212420Rat
69422Cox4i2cytochrome c oxidase subunit 4i23141228443141239337Rat
2200Bcl2l1Bcl2-like 13141253508141304582Rat
11403788Rps2-ps43ribosomal protein S2, pseudogene 433141273638141274748Rat
1311894Tpx2TPX2, microtubule nucleation factor3141318428141360684Rat
41014374LOC120102102small nucleolar RNA U1093141335435141335551Rat
7684453LOC102553350uncharacterized LOC1025533503141362126141376351Rat
620934Mylk2myosin light chain kinase 23141376450141388357Rat
1310679Foxs1forkhead box S13141397012141398296Rat
1305990Dusp15dual specificity phosphatase 153141408495141419137Rat
1359622Ttll9tubulin tyrosine ligase like 93141429351141475965Rat
1305096Pdrg1p53 and DNA damage regulated 13141477561141483730Rat
1359224Xkr7XK related 73141500908141525062Rat
11434931LOC108350503uncharacterized LOC1083505033141518484141522235Rat
1305202Ccm2lCCM2 like scaffold protein3141533470141549136Rat
2785HckHCK proto-oncogene, Src family tyrosine kinase3141571587141614696Rat
7634195LOC102554664uncharacterized LOC1025546643141615499141621688Rat
41042908LOC120101963U6 spliceosomal RNA3141620611141620710Rat
1307768Tm9sf4transmembrane 9 superfamily member 43141627128141675386Rat
1310192Tspy26testis specific protein, Y-linked 263141690653141692729Rat
1307999Plagl2PLAG1 like zinc finger 23141695322141708516Rat
1303001Pofut1protein O-fucosyltransferase 13141708618141735558Rat
1582864Rpl27al6ribosomal protein L27A like 63141747835141748599Rat
1306815Kif3bkinesin family member 3B3141758466141798012Rat
1561878Asxl1ASXL transcriptional regulator 13141814012141881526Rat
1563510Nol4lnucleolar protein 4-like3141884840142007668Rat
11441130LOC108350618uncharacterized LOC1083506183142036623142040244Rat
9406645LOC103691935uncharacterized LOC1036919353142062129142076395Rat
41033438LOC120101758uncharacterized LOC1201017583142076408142080824Rat
1307786Commd7COMM domain containing 73142099566142114348Rat
1303274Dnmt3bDNA methyltransferase 3 beta3142130588142169128Rat
1589645Dnmt3b-ps1DNA methyltransferase 3B, pseudogene 13142152555142210602Rat
621781Mapre1microtubule-associated protein, RP/EB family, member 13142218846142246990Rat
9854662Rps27a-ps8ribosomal protein S27a, pseudogene 83142241989142242426Rat
41345769LOC120101759uncharacterized LOC1201017593142252406142257077Rat
1597364Efcab8EF-hand calcium binding domain 83142257195142323743Rat
1306357Sun5Sad1 and UNC84 domain containing 53142334931142355349Rat
1310866Bpifb2BPI fold containing family B, member 23142356990142377053Rat
1311602Bpifb6BPI fold containing family B, member 63142381478142395304Rat
1565613Bpifb3BPI fold containing family B, member 33142401068142415684Rat
1561174Bpifb4BPI fold containing family B, member 43142423571142448044Rat
41400483LOC120101760uncharacterized LOC1201017603142444035142447913Rat
2323465Bpifa6BPI fold containing family A, member 63142465236142483857Rat
3431Bpifa2BPI fold containing family A, member 23142493379142501343Rat
3725Bpifa2fBPI fold containing family A, member 2F3142521255142533462Rat
1564277Timm17al1-ps1translocase of inner mitochondrial membrane 17a-like 1, pseudogene 13142523181142523902Rat
41155485LOC120102098small nucleolar RNA U133142572873142572974Rat
1596102Bpifa3BPI fold containing family A, member 33142609748142619703Rat
619818Bpifa1BPI fold containing family A, member 13142627810142633553Rat
1559748Bpifa5BPI fold containing family A, member 53142646103142652884Rat
1563047Bpifb1BPI fold containing family B, member 13142672995142706258Rat
1596031Bpifb5BPI fold containing family B, member 53142706316142728330Rat
1596015Morf4l2-ps1mortality factor 4 like 2, pseudogene 13142752096142752789Rat
1594746Rplp1l3ribosomal protein lateral stalk subunit P1 like 33142756538142770325Rat
1594733Hmgb1l3high mobility group box 1 like 33142792113142792852Rat
41026694LOC120101703vomeromodulin-like3142804633142814240Rat
708387Cdk5rap1CDK5 regulatory subunit associated protein 13142838081142872669Rat
41237402LOC120101761uncharacterized LOC1201017613142872649142878051Rat
1307068Snta1syntrophin, alpha 13142876285142906737Rat
1309088Cbfa2t2CBFA2/RUNX1 partner transcriptional co-repressor 23142936945143043205Rat
1585184Sms-ps2spermine synthase, pseudogene 23142943678142945260Rat
7678473Rps10-ps7ribosomal protein S10, pseudogene 73142962044142962626Rat
41088778Zfyve21-ps1zinc finger FYVE-type containing 21, pseudogene 13143013286143014456Rat
1310124Necab3N-terminal EF-hand calcium binding protein 33143049477143064372Rat
1561517C3h20orf144similar to human chromosome 20 open reading frame 1443143053971143055327Rat
6491130Actl10actin-like 103143057061143058561Rat
728892E2f1E2F transcription factor 13143064535143075362Rat
628782Pxmp4peroxisomal membrane protein 43143093371143110620Rat
9414358Snrpel3small nuclear ribonucleoprotein polypeptide E like 33143118822143119593Rat
1564726Zfp341zinc finger protein 3413143122699143156250Rat
11427923Trnaa-agc3transfer RNA alanine (anticodon AGC) 33143128296143128368Rat
9202998Eef1a1l2eukaryotic translation elongation factor 1 alpha 1 like 23143138360143139773Rat
1309846Chmp4bcharged multivesicular body protein 4B3143170859143211376Rat
1594668Rpl38l6ribosomal protein L38 like 63143285738143286894Rat
1307228RalyRALY heterogeneous nuclear ribonucleoprotein3143306039143370542Rat
41054535Sec61g-ps7Sec61 translocon subunit gamma, pseudogene 73143357260143357815Rat
735192Eif2s2eukaryotic translation initiation factor 2 subunit beta3143374652143395460Rat
41153664LOC120102011small nucleolar RNA SNORA443143401085143401193Rat
2003Asipagouti signaling protein3143473584143561170Rat
41044769Trnaa-agc28transfer RNA alanine (anticodon AGC) 283143536893143536974Rat
69260Ahcyadenosylhomocysteinase3143569134143584359Rat
1587297Rpl12-ps7ribosomal protein L12, pseudogene 73143611486143612104Rat
7598717LOC102549926uncharacterized LOC1025499263143633881143642358Rat
1359556Itchitchy E3 ubiquitin protein ligase3143642348143733745Rat
619910Dynlrb1dynein light chain roadblock-type 13143742427143764227Rat
41309114LOC120102109U2 spliceosomal RNA3143781974143782150Rat
735183Map1lc3amicrotubule-associated protein 1 light chain 3 alpha3143783024143784670Rat
727825Piguphosphatidylinositol glycan anchor biosynthesis, class U3143784831143881268Rat
41159423Rnu6-524RNA, U6 small nuclear 5243143809843143809946Rat
41095606LOC12010192240S ribosomal protein S12-like3143816918143818611Rat
735085Tp53inp2tumor protein p53 inducible nuclear protein 23143881427143890104Rat
7489021Mir6334microRNA 63343143883158143883256Rat
620111Ncoa6nuclear receptor coactivator 63143890896143961916Rat
41085601LOC120102001U1 spliceosomal RNA3143962670143962834Rat
619870Ggt7gamma-glutamyltransferase 73143978073144004597Rat
1305489Acss2acyl-CoA synthetase short-chain family member 23144003808144047452Rat
41328501LOC120102019small nucleolar RNA SNORA183144015157144015287Rat
2752Gssglutathione synthetase3144047849144078197Rat
1307994Myh7bmyosin heavy chain 7B3144076911144122714Rat
2325514Mir499amicroRNA 499a3144110469144110533Rat
1309914Trpc4aptransient receptor potential cation channel, subfamily C, member 4 associated protein3144122003144192986Rat
1303074Edem2ER degradation enhancing alpha-mannosidase like protein 23144201604144227423Rat
1305991Procrprotein C receptor3144254596144258863Rat
41329311Pomp-ps2proteasome maturation protein, pseudogene 23144266741144267794Rat
620202Mmp24matrix metallopeptidase 243144279096144323572Rat
28912741Mmp24osMMP24 opposite strand3144322936144324449Rat
1305373Eif6eukaryotic translation initiation factor 63144325038144331396Rat
1585687Fam83cfamily with sequence similarity 83, member C3144333736144339758Rat
1585681Uqcc1ubiquinol-cytochrome c reductase complex assembly factor 13144353276144445810Rat
620102Gdf5growth differentiation factor 53144454316144458508Rat
1562262Cep250centrosomal protein 2503144470946144516125Rat
7514905C3h20orf173similar to human chromosome 20 open reading frame 1733144514060144524979Rat
1308144Ergic3ERGIC and golgi 33144525059144534813Rat
1308250Fer1l4fer-1-like family member 43144536099144571634Rat
620151Spag4sperm associated antigen 43144581006144587879Rat
1311148Cpne1copine 13144587531144629911Rat
1594333Rbm12RNA binding motif protein 123144609661144629911Rat
11373702LOC108350619glyceraldehyde-3-phosphate dehydrogenase pseudogene3144635975144637182Rat
620912Nfs1NFS1 cysteine desulfurase3144637309144659660Rat
1587111Romo1reactive oxygen species modulator 13144659709144661310Rat
1310071Rbm39RNA binding motif protein 393144662998144696222Rat
1305020Phf20PHD finger protein 203144710253144816696Rat
1308530Scand1SCAN domain-containing 13144818615144819479Rat
1311678Cnbd2cyclic nucleotide binding domain containing 23144819166144884825Rat
41355136LOC120102024small nucleolar RNA SNORA483144829292144829430Rat
9186323LOC103691957ferritin light chain 1 pseudogene3144914641144915944Rat
71087Epb41l1erythrocyte membrane protein band 4.1-like 13144929195145052723Rat
1311066Aar2AAR2 splicing factor3145057368145079838Rat
41205609LOC120101765uncharacterized LOC1201017653145082290145082766Rat
41314027LOC120101766uncharacterized LOC1201017663145084166145084774Rat
708350Dlgap4DLG associated protein 43145124189145271791Rat
9238136LOC103691945uncharacterized LOC1036919453145223628145230600Rat
1311235Myl9myosin light chain 93145281943145288333Rat
7616921LOC102551821uncharacterized LOC1025518213145300178145310983Rat
41398160LOC120101767uncharacterized LOC1201017673145322745145333091Rat
1560115Tgif2TGFB-induced factor homeobox 23145333152145348599Rat
1307752Rab5ifRAB5 interacting factor3145357990145368012Rat
1562071Sla2Src-like-adaptor 23145367070145383586Rat
41400309Ndrg3l1NDRG family member 3 like 13145470533145506438Rat
41265125LOC120101769protein NDRG3-like3145508996145544082Rat
41037735LOC120101770protein NDRG3-like3145548032145584913Rat
1359424Ndrg3NDRG family member 33145587505145650896Rat
7523536Rps2-ps10ribosomal protein S2, pseudogene 103145652737145653710Rat
1565179Dsn1DSN1 component of MIS12 kinetochore complex3145652741145668025Rat
1563627Mtcl2microtubule crosslinking factor 23145669102145741578Rat
1561343Tldc2TBC/LysM-associated domain containing 23145742381145758847Rat
1308369Samhd1SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 13145761549145794420Rat
1595511Rbl1RB transcriptional corepressor like 13145806160145869434Rat
11469368LOC10835054560S ribosomal protein L34 pseudogene3145838414145840322Rat
41181263LOC120101995U7 small nuclear RNA3145873716145873780Rat
2321481Mroh8maestro heat-like repeat family member 83145873995145942439Rat
62075Rpn2ribophorin II3145941787145989271Rat
61883Ghrhgrowth hormone releasing hormone3145992762146012528Rat
1561447Manbalmannosidase beta like3146035082146064676Rat
11400670LOC108350508uncharacterized LOC1083505083146086851146091815Rat
620795SrcSRC proto-oncogene, non-receptor tyrosine kinase3146091969146139492Rat
621666BlcapBLCAP, apoptosis inducing factor3146222699146232859Rat
620155Nnatneuronatin3146225941146228868Rat
11479204LOC108350620uncharacterized LOC1083506203146304258146306205Rat
40999503LOC120101772uncharacterized LOC1201017723146327117146346813Rat
1563558Ctnnbl1catenin, beta like 13146387940146548987Rat
41257292Mpc1l-ps3mitochondrial pyruvate carrier 1-like, pseudogene 33146410248146410689Rat
1305725Vstm2lV-set and transmembrane domain containing 2 like3146571099146600930Rat
1562582Tti1TELO2 interacting protein 13146639048146682945Rat
1304782Rprd1bregulation of nuclear pre-mRNA domain containing 1B3146682975146729251Rat
11491028LOC108350509uncharacterized LOC1083505093146732293146733569Rat
621081Tgm2transglutaminase 23146772684146801924Rat
1563354Kiaa1755KIAA1755 ortholog3146850558146884238Rat
1303179Bpibactericidal/permeability-increasing protein3146909626146936487Rat
61865Lbplipopolysaccharide binding protein3146953889146981032Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33810D3Mit22453141339013141339236Ratregion
36223D3Rat1471593141616923141617091Ratregion
36380D3Mgh291253143087759143087884Ratregion
37204D3Rat782493144938577144938823Ratregion
35356D3Rat51643146592722146592883Ratregion
35378D3Rat611333145925360145925493Ratregion
35378D3Rat611333145925360145925493Ratregion
36882D3Rat72623143636175143636438Ratregion
36584D3Rat61663145956084145956249Ratregion
39612D3Rat1461453142046174142046321Ratregion
42678D3Rat2142433141029271141029496Ratregion
41872D3Rat2371073144655696144655803Ratregion
43709D3Got1031723140658533140658705Ratregion
43710D3Got1001323140465482140465614Ratregion
43711D3Got1011573142019153142019310Ratregion
43712D3Got1052363140986979140987215Ratregion
43714D3Got1021343140069424140069560Ratregion
43715D3Got1061333141282112141282245Ratregion
43716D3Got1821983141053656141053856Ratregion
43718D3Got1111263144006941144007067Ratregion
43720D3Got1101583144294166144294324Ratregion
43721D3Got1171613144983277144983438Ratregion
43722D3Got1161653146013606146013771Ratregion
43723D3Got1181433146013606146013749Ratregion
60361D3Got1081413144133147144133285Ratregion
60362D3Got1091863143282142143282328Ratregion
60363D3Got1121753144050848144051023Ratregion
60364D3Got1141313143609237143609368Ratregion
60365D3Got1212143146975869146976080Ratregion
60367D3Got1252183146975873146976091Ratregion
66453D3Mco191893145871677145871858Ratregion
67758D3Uwm11893145864084145864245Ratregion
1636877D3Wox372303142491933142492163Ratregion
1633670D3Got2581423144903148144903287Ratregion
7205994Bcl2l15583141302496141302847Ratregion
7205850UniSTS:469811923145346299145346391Ratregion
7205852Tgif23593145346561145346920Ratregion
7192156Mapre11483142245528142245676Ratregion
7206070Sms5013142944211142944712Ratregion
5035911PMC305683P16683141211352141212020Ratregion
5038814RH1273482163145431188145431404Ratregion
5038814RH1273482163145470156145470370Ratregion
5038814RH1273482163145509148145509364Ratregion
5038814RH1273482163145548184145548400Ratregion
5038814RH1273482163145587657145587873Ratregion
5038972RH1274391243143370397143370521Ratregion
7206642Tgif210513145347369145348420Ratregion
5039266RH1276072013144048021144048222Ratregion
5036777AU0491702093141569016141569225Ratregion
5036805AU0492621123144425088144425200Ratregion
5035679WI-151021323140874046140874178Ratregion
5026060RH1307522083140097809140098017Ratregion
5031394PMC156147P2803141211531141211611Ratregion
5034301Brp44l1013146409902146410003Ratregion
5026354RH1318832023145220744145220946Ratregion
5029019RH1432082343140736366140736600Ratregion
5032064AU046566883142837554142837644Ratregion
5032183RH1262682043144122036144122240Ratregion
5026914RH1340192093141877418141877627Ratregion
5029413Tgm2673146784087146784742Ratregion
5027020RH1344251933140474574140474767Ratregion
5027237AW0606591413140594953140595094Ratregion
5032557WI-220262523145052474145052726Ratregion
5034856AI169436933144884585144884678Ratregion
5034856AI169436933144884585144884678Ratregion
5029991AI0723542133144258545144258758Ratregion
5030019BF4007331603144223748144223908Ratregion
5032839RH1366812173145678641145678858Ratregion
5035258BM3837541783141254537141254715Ratregion
5027581U00677803142876653142876733Ratregion
5030151BI2866031693146228606146228775Ratregion
5025214RH1274522033144353334144353537Ratregion
5025402RH1281761983144637527144637725Ratregion
5025416RH1282322143140609767140609981Ratregion
5030581BF3981202153144609866144610081Ratregion
5030639BI3014041823144747875144748057Ratregion
5025524RH1286551823143889875143890057Ratregion
5030841BE1206211513145353926145354077Ratregion
5025688RH1292751973141811665141811862Ratregion
5025776RH1296221553146064502146064657Ratregion
5033725RH1398881893141885160141885349Ratregion
5033747RH1399732013141548774141548977Ratregion
5025816RH1297891843146772702146772886Ratregion
5025860RH1299672083145052511145052719Ratregion
5028408U083371223144454464144454586Ratregion
5055057RH1435811173144816162144816279Ratregion
5051194RH1344932123145271553145271765Ratregion
5051262RH1345321943142876382142876576Ratregion
5051342AA9865531283141673535141673663Ratregion
5056093RH1441781223143976644143976766Ratregion
5054131RH1430482143145672287145672503Ratregion
5054243RH1431122523140862033140862285Ratregion
5057422BF4182991113141616186141616297Ratregion
5057450AA8585692203146228607146228827Ratregion
5058714BE1023631543145729584145729738Ratregion
5058752BF3870231593145239322145239481Ratregion
5052251J030231553141614468141614623Ratregion
5055377RH1437662653141112051141112316Ratregion
5052701RH1422171963142500135142501326Ratregion
5052299N281591583145270301145270459Ratregion
5053395RH1426231243143376779143376903Ratregion
5059336AW5300822043145987980145988184Ratregion
5049900RH1337462023140885825140885857Ratregion
5051344AW212607913141689638141689729Ratregion
5044478RH13062603144201668144201800Ratregion
5044700RH1307542103141046649141046859Ratregion
5043732RH1301951963143732869143733065Ratregion
5045124RH1309982173143155893143156110Ratregion
5045334RH1311181873142250664142250851Ratregion
5041618RH1289601963142245527142245723Ratregion
5043898RH1302921573144325074144325231Ratregion
5048822RH1331252123143373697143373909Ratregion
5048828RH1331292103146600680146600890Ratregion
5049426RH1334742173145988951145989168Ratregion
5047204RH1321931913141529297141529488Ratregion
5047222RH1322032023140838969140839171Ratregion
5042554RH1295041803145367729145367909Ratregion
5048582RH1329862143141797642141797856Ratregion
5040238RH1281692113143784414143784625Ratregion
5040386RH1282531993145984378145984577Ratregion
5040424RH1282751933140755009140755202Ratregion
5043060RH1298081893140762349140762538Ratregion
5043196RH1298872173144663028144663245Ratregion
5042246RH1293242053141675077141675282Ratregion
5040766RH1284711823143211168143211350Ratregion
5040026RH1280471813144323037144323218Ratregion
5040072RH1280732023146772859146773061Ratregion
7192203Nnat1953146228502146228697Ratregion
5042752RH1296251853142109612142109797Ratregion
5040954RH1285792183144815623144815841Ratregion
5042916RH1297201813144047206144047387Ratregion
5042982RH1297602093146729037146729246Ratregion
5072790RH1370551803141811666141811846Ratregion
5074262RH1379151613141479535141479696Ratregion
5072826RH1370761573140453395140453552Ratregion
5074538RH1380752393141838001141838240Ratregion
5074642RH1381341233141888664141888787Ratregion
5080624RH1416871803144587624144587804Ratregion
5075920RH1388731403141409655141409795Ratregion
5075160RH1384331273140502158140502285Ratregion
5076706RH1393311563143373600143373756Ratregion
5076772RH139369683144661193144661261Ratregion
5079530RH1410512083143763911143764119Ratregion
5079614RH1411032093145759802145760011Ratregion
5078350RH1402902203140486123140486343Ratregion
5077824RH1399801803145756970145757151Ratregion
5077834RH1399861943142251428142251622Ratregion
5079036RH1406972073145288065145288272Ratregion
5080284RH1414911863141477597141477957Ratregion
5073350RH1373851563141614503141614659Ratregion
5073718RH1375981463140098579140098725Ratregion
5073200RH1372981823144354435144354617Ratregion
5071480RH1351061973141180747141180944Ratregion
5071502RH1351192083144323641144323849Ratregion
5073632RH1375482193141004250141005446Ratregion
5071640RH1351992183141886156141886374Ratregion
5066652AU0482311613141471946141472107Ratregion
5067088AU0479712363146117760146117991Ratregion
5067388AU0477831203146883892146884012Ratregion
5068700AU046987993143344750143344817Ratregion
5068720AU0469752433143985604143985848Ratregion
5068850AU0468872023144024138144024340Ratregion
5070203RH945321703141614453141614623Ratregion
5060414AW525550953141881398141881493Ratregion
5060446BE1100831893140856569140856758Ratregion
5060888BF4012561173144255469144255586Ratregion
5065756BE1097972133141157503141157716Ratregion
5065150BE1210081733141661792141661965Ratregion
5060472BE1101901873146137743146137930Ratregion
5065542BE1092531703140802339140802509Ratregion
5062498BF3979991213143318376143318497Ratregion
5064326AW5299961593143992486143992645Ratregion
5066026BF4131471503146228150146228302Ratregion
5061150BI2931092023140515535140515737Ratregion
5061286BI2870241723145372794145372966Ratregion
5063314BE1075041843141814727141814911Ratregion
5064854BE1086371503141111741141111891Ratregion
5086889BM3882761543144687968144688122Ratregion
5082155AI5784161263144672419144672545Ratregion
5086155AW5295451983145988162145988360Ratregion
5082505BE1195961993146067239146067438Ratregion
5082625BF4164391183143394692143394810Ratregion
5087882UniSTS:1431905423144454319144454861Ratregion
5088082Raly1473143306349143306496Ratregion
5089153AU0489861073144903388144903421Ratregion
5084478AA8504831753145079787145079962Ratregion
5084810AI1028861853143568279143568464Ratregion
5088553AU0486382263142879770142880170Ratregion
5088553AU0486382263142879945142880170Ratregion
5090605AU0498512333143618475143618708Ratregion
5088663AU0487032933142816794142817087Ratregion
5088781AU0487712553140797885140798142Ratregion
5081260RH1420582003143560914143561114Ratregion
5085826BM3850761533140474557140474710Ratregion
5086278AI1367401843141880883141881067Ratregion
5086379AI4544261843145322859145323043Ratregion
5081300RH1420811833141727051141727234Ratregion
5084868AI1722251193141734570141734689Ratregion
5083049BI2816961633146228368146228531Ratregion
5083707AI1799402013141733250141734689Ratregion
5081783BE1182291503140782217140782367Ratregion
5507483ECD045987603144615409144616169Ratregion
5507503ECD087959743144664056144665030Ratregion
5503863UniSTS:472909753142158376142158451Ratregion
5503863UniSTS:472909753142195729142195804Ratregion
5507645E2f16693143065743143066412Ratregion
5504432PMC20354P52573141302370141302627Ratregion
5504514PMC262691P21823141302331141302513Ratregion
5507803REN570772453144321665144321910Ratregion
5507805REN572632703144370195144370465Ratregion
5507807REN577162253144455253144455478Ratregion
5507809REN577332423144458454144458696Ratregion
5507811REN585082523144595209144595461Ratregion
5507813REN586062433144614667144614910Ratregion
5507815REN586052553144614419144614674Ratregion
5507817REN589392473144694875144695122Ratregion
5505381Csnk2a111643140755545140756709Ratregion
5505959UniSTS:4966582043144458285144458489Ratregion
5505630UniSTS:48776214973144581150144582647Ratregion
5506107UniSTS:4983854033141614236141614639Ratregion
5506262WI-145931503146124907146126213Ratregion
5507083UniSTS:2244271543141254674141254828Ratregion
5499651MARC_6533-6534:992007280:11263143365841143367491Ratregion
5501133PMC145454P3763141211592141211668Ratregion
5499757UniSTS:2345562333140574681140574914Ratregion
5499763UniSTS:2345572103140474892140475102Ratregion
5499765UniSTS:2345762133143068189143068402Ratregion
5499767UniSTS:2345781023144354686144354788Ratregion
5502809EPB41L14783145045896145046374Ratregion
5500781stSG62161403145263105145263635Ratregion
5500781stSG62161403145263105145263653Ratregion
5500825stSG636695963144525152144525383Ratregion
5500827stSG63683911293144693891144695020Ratregion
5500483RH1265241063146729068146729174Ratregion
5500611RH1362452053141695418141695623Ratregion
5500697RH925321523141879491141879643Ratregion
5503672UniSTS:466074693146780187146780256Ratregion
5501023PMC123054P24193141302549141302968Ratregion
5501083PMC133998P56683141211352141212020Ratregion
5501185PMC152357P3813143075205143075286Ratregion
5501412Nnat6163146228077146228693Ratregion
5501161PMC151376P103143456350143456662Ratregion
5501161PMC151376P103143473511143473814Ratregion
5501183PMC152357P4863143075010143075096Ratregion
5504656PMC33181P17153141211344141212059Ratregion
5505177UniSTS:52568513253142153093142154418Ratregion
5505179UniSTS:52568603142165241142165985Ratregion
5505179UniSTS:52568603142205382142206153Ratregion
5505182Dnmt3b3923142159601142159993Ratregion
5501908MARC_17207-17208:1023890900:15033144693476144693979Ratregion
5502044MARC_26120-26121:1030366872:11743144527241144528051Ratregion
5506423UniSTS:4792217753144613653144614428Ratregion
5501856MARC_15779-15780:1017948347:110503145042610145043660Ratregion
5502222G642851313144695213144695975Ratregion
5502230RH1354751753144319172144319347Ratregion
Position Markers

Flank 1: (D3Got102)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23140,069,424 - 140,069,560 (+)MAPPER
Rnor_6.03147,072,047 - 147,072,180NCBI
Rnor_5.03153,428,179 - 153,428,312UniSTS
RGSC_v3.43141,890,118 - 141,890,252RGD
RGSC_v3.43141,890,119 - 141,890,252UniSTS
RGSC_v3.13141,795,692 - 141,795,825RGD
Celera3138,828,804 - 138,828,937UniSTS
RH 3.4 Map31216.6UniSTS
RH 3.4 Map31216.6RGD
RH 2.0 Map3848.5RGD
Cytogenetic Map3q41UniSTS
Flank 2: (D3Got121)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23146,975,869 - 146,976,080 (+)MAPPER
Rnor_6.03154,807,748 - 154,807,958NCBI
Rnor_5.03160,798,253 - 160,798,463UniSTS
RGSC_v3.43149,038,367 - 149,038,578RGD
RGSC_v3.43149,038,368 - 149,038,578UniSTS
RGSC_v3.13148,944,277 - 148,944,487RGD
Celera3145,676,915 - 145,677,125UniSTS
RH 3.4 Map31357.9RGD
RH 3.4 Map31357.9UniSTS
Cytogenetic Map3q42UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cand_genes 1585148, 1564030, 1562393, 1559541, 1589571, 1564902, 1564765, 1306560, 1308946, 2858, 1589646, 69422, 2200 5684423