Fer (FER tyrosine kinase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Fer (FER tyrosine kinase) Rattus norvegicus
Analyze
Symbol: Fer
Name: FER tyrosine kinase
RGD ID: 1306273
Description: Enables several functions, including cadherin binding activity; enzyme binding activity; and gamma-catenin binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; regulation of cell migration; and regulation of mast cell activation involved in immune response. Predicted to act upstream of or within protein autophosphorylation and signal transduction. Predicted to be located in cytosol and nucleus. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Predicted to colocalize with several cellular components, including chromatin; cytoskeleton; and lamellipodium. Orthologous to human FER (FER tyrosine kinase); PARTICIPATES IN N-cadherin signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: c-FER; fer (fms/fps related) protein kinase, testis specific 2; fer (fps/fes related) tyrosine kinase; Fert2; Flk; Flk_retired; LOC367326; p94-FER; proto-oncogene c-Fer; proto-oncogene tyrosine-protein kinase Fer; tyrosine protein kinase FLK; tyrosine-protein kinase Fer; tyrosine-protein kinase FLK
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29103,520,452 - 103,827,364 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl9103,520,493 - 103,821,451 (+)Ensembl
Rnor_6.09111,557,804 - 111,868,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9111,597,037 - 111,862,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09111,103,930 - 111,410,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49102,645,929 - 102,861,698 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19102,805,652 - 102,969,235 (+)NCBI
Celera9101,013,100 - 101,221,975 (+)NCBICelera
Cytogenetic Map9q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton reorganization  (IEA,ISO,ISS)
cell adhesion  (IBA,ISO)
cell differentiation  (IBA)
cell population proliferation  (IEA)
cell-cell adhesion mediated by cadherin  (IEA,ISO,ISS)
cellular response to insulin stimulus  (ISO,ISS)
cellular response to macrophage colony-stimulating factor stimulus  (IEA,ISO)
cellular response to reactive oxygen species  (IEA,ISO,ISS)
chemotaxis  (IBA,IEA,ISO)
cytokine-mediated signaling pathway  (ISO,ISS)
diapedesis  (IEA,ISO,ISS)
extracellular matrix-cell signaling  (IEA,ISO,ISS)
Fc-epsilon receptor signaling pathway  (IBA,IEA,ISO,ISS)
innate immune response  (IBA)
insulin receptor signaling pathway via phosphatidylinositol 3-kinase  (IEA,ISO,ISS)
interleukin-6-mediated signaling pathway  (IEA,ISO)
Kit signaling pathway  (IEA,ISO,ISS)
microtubule cytoskeleton organization  (IEA,ISO,ISS)
negative regulation of mast cell activation involved in immune response  (IEA,ISO,ISS)
peptidyl-tyrosine phosphorylation  (IEA,ISO,ISS)
platelet-derived growth factor receptor signaling pathway  (IEA,ISO,ISS)
positive regulation of actin filament polymerization  (IEA,ISO,ISS)
positive regulation of cell migration  (IEA,ISO,ISS)
positive regulation of cell population proliferation  (IEA,ISO)
positive regulation of NF-kappaB transcription factor activity  (IEA,ISO,ISS)
protein autophosphorylation  (IEA,ISO)
protein phosphorylation  (ISO)
regulation of epidermal growth factor receptor signaling pathway  (IEA,ISO,ISS)
regulation of fibroblast migration  (IEA,ISO)
regulation of lamellipodium assembly  (IEA,ISO,ISS)
regulation of mast cell degranulation  (IBA)
regulation of protein phosphorylation  (IEA,ISO,ISS)
response to lipopolysaccharide  (IEA,ISO,ISS)
response to platelet-derived growth factor  (IEA,ISO,ISS)
signal transduction  (ISO)
substrate adhesion-dependent cell spreading  (IEA,ISO,ISS)
transmembrane receptor protein tyrosine kinase signaling pathway  (IBA)
tyrosine phosphorylation of STAT protein  (IEA,ISO)

Cellular Component
actin cytoskeleton  (IEA,ISO,ISS)
cell cortex  (IEA)
cell junction  (IEA,ISO,ISS)
chromatin  (IEA,ISO,ISS)
cytoplasm  (ISO,ISS)
cytosol  (IEA,ISO)
extrinsic component of cytoplasmic side of plasma membrane  (IBA,IEA,ISO,ISS)
lamellipodium  (IEA,ISO,ISS)
microtubule cytoskeleton  (IEA,ISO,ISS)
nucleus  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1990274   PMID:2485255   PMID:7623846   PMID:9722593   PMID:11006284   PMID:12192036   PMID:12972546   PMID:16009680   PMID:16176974   PMID:16731527   PMID:16732323   PMID:17606629  
PMID:18985748   PMID:19047464   PMID:19147545   PMID:19738202   PMID:21518868   PMID:22223638   PMID:25540073  


Genomics

Comparative Map Data
Fer
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29103,520,452 - 103,827,364 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl9103,520,493 - 103,821,451 (+)Ensembl
Rnor_6.09111,557,804 - 111,868,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9111,597,037 - 111,862,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09111,103,930 - 111,410,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49102,645,929 - 102,861,698 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19102,805,652 - 102,969,235 (+)NCBI
Celera9101,013,100 - 101,221,975 (+)NCBICelera
Cytogenetic Map9q37NCBI
FER
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5108,747,841 - 109,196,841 (+)EnsemblGRCh38hg38GRCh38
GRCh385108,746,085 - 109,196,841 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375108,083,598 - 108,532,542 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365108,111,422 - 108,551,272 (+)NCBINCBI36hg18NCBI36
Build 345108,111,421 - 108,551,272NCBI
Celera5104,021,685 - 104,463,167 (+)NCBI
Cytogenetic Map5q21.3NCBI
HuRef5103,255,853 - 103,696,708 (+)NCBIHuRef
CHM1_15107,516,662 - 107,956,463 (+)NCBICHM1_1
Fer
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391764,136,945 - 64,453,515 (+)NCBIGRCm39mm39
GRCm39 Ensembl1764,170,057 - 64,446,491 (+)Ensembl
GRCm381763,862,073 - 64,146,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1763,863,062 - 64,139,496 (+)EnsemblGRCm38mm10GRCm38
MGSCv371764,245,367 - 64,488,845 (+)NCBIGRCm37mm9NCBIm37
MGSCv361763,581,484 - 63,824,640 (+)NCBImm8
Celera1768,237,664 - 68,455,526 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
Fer
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554185,614,950 - 5,981,636 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554185,612,919 - 5,981,549 (-)NCBIChiLan1.0ChiLan1.0
FER
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15109,915,751 - 110,350,673 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5109,964,823 - 110,350,576 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05104,099,620 - 104,548,077 (+)NCBIMhudiblu_PPA_v0panPan3
FER
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132,863,804 - 3,295,999 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32,867,726 - 3,295,999 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha34,272,340 - 4,700,462 (-)NCBI
ROS_Cfam_1.032,756,396 - 3,188,729 (-)NCBI
UMICH_Zoey_3.132,707,992 - 3,136,116 (-)NCBI
UNSW_CanFamBas_1.032,735,868 - 3,165,523 (-)NCBI
UU_Cfam_GSD_1.032,872,292 - 3,307,139 (-)NCBI
Fer
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213157,705,239 - 158,134,183 (-)NCBI
SpeTri2.0NW_0049365313,512,976 - 3,898,885 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FER
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2113,774,412 - 114,206,930 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12113,774,120 - 114,207,307 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22118,230,513 - 118,512,081 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FER
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12312,252,135 - 12,629,584 (+)NCBI
ChlSab1.1 Ensembl2312,192,800 - 12,620,443 (+)Ensembl
Vero_WHO_p1.0NW_0236660361,598,008 - 2,044,849 (-)NCBI
Fer
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474326,663,440 - 27,097,771 (+)NCBI

Position Markers
D9Rat140  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29103,532,184 - 103,532,285 (+)MAPPERmRatBN7.2
Rnor_6.09111,571,379 - 111,571,479NCBIRnor6.0
Rnor_5.09111,115,647 - 111,115,747UniSTSRnor5.0
RGSC_v3.49102,570,430 - 102,570,530UniSTSRGSC3.4
RGSC_v3.49102,570,429 - 102,570,530RGDRGSC3.4
RGSC_v3.19102,779,909 - 102,780,010RGD
FHH x ACI Map983.53UniSTS
FHH x ACI Map983.53RGD
Cytogenetic Map9q37UniSTS
AI010628  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29103,819,978 - 103,820,146 (+)MAPPERmRatBN7.2
Rnor_6.09111,861,198 - 111,861,365NCBIRnor6.0
Rnor_5.09111,403,242 - 111,403,409UniSTSRnor5.0
RGSC_v3.49102,860,226 - 102,860,393UniSTSRGSC3.4
Celera9101,220,503 - 101,220,670UniSTS
Cytogenetic Map9q37UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:904
Count of miRNA genes:230
Interacting mature miRNAs:266
Transcripts:ENSRNOT00000021758, ENSRNOT00000056430
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 10 12 6 8 6 1 1 65 22 37 9 1
Low 3 33 45 35 11 35 7 10 9 13 4 2 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000021758   ⟹   ENSRNOP00000021758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9103,557,987 - 103,820,142 (+)Ensembl
Rnor_6.0 Ensembl9111,597,037 - 111,861,366 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000056430   ⟹   ENSRNOP00000053268
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9103,608,388 - 103,821,451 (+)Ensembl
Rnor_6.0 Ensembl9111,649,631 - 111,862,670 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097737   ⟹   ENSRNOP00000090379
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9103,520,493 - 103,820,142 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112759   ⟹   ENSRNOP00000095206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9103,558,044 - 103,820,148 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117309   ⟹   ENSRNOP00000077379
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9103,520,508 - 103,558,360 (+)Ensembl
RefSeq Acc Id: NM_001106928   ⟹   NP_001100398
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,608,388 - 103,821,451 (+)NCBI
Rnor_6.09111,649,631 - 111,862,670 (+)NCBI
Rnor_5.09111,103,930 - 111,410,627 (+)NCBI
RGSC_v3.49102,645,929 - 102,861,698 (+)RGD
Celera9101,013,100 - 101,221,975 (+)RGD
Sequence:
RefSeq Acc Id: XM_008767367   ⟹   XP_008765589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,527,342 - 103,827,364 (+)NCBI
Rnor_6.09111,566,509 - 111,868,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596385   ⟹   XP_017451874
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,607,950 - 103,827,364 (+)NCBI
Rnor_6.09111,649,213 - 111,868,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083431   ⟹   XP_038939359
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,453 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083432   ⟹   XP_038939360
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,537 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083433   ⟹   XP_038939361
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,453 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083434   ⟹   XP_038939362
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,752,503 (+)NCBI
RefSeq Acc Id: XM_039083435   ⟹   XP_038939363
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,756,107 (+)NCBI
RefSeq Acc Id: XM_039083436   ⟹   XP_038939364
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,587,997 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083438   ⟹   XP_038939366
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,612,417 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083439   ⟹   XP_038939367
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,612,417 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083440   ⟹   XP_038939368
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,612,417 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083441   ⟹   XP_038939369
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,607,948 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083442   ⟹   XP_038939370
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,607,948 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083443   ⟹   XP_038939371
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,612,417 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083444   ⟹   XP_038939372
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,612,417 - 103,827,364 (+)NCBI
RefSeq Acc Id: XM_039083445   ⟹   XP_038939373
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,612,560 (+)NCBI
RefSeq Acc Id: XM_039083446   ⟹   XP_038939374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,627,474 (+)NCBI
RefSeq Acc Id: XM_039083447   ⟹   XP_038939375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,628,477 (+)NCBI
RefSeq Acc Id: XM_039083448   ⟹   XP_038939376
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,628,328 (+)NCBI
RefSeq Acc Id: XR_005488881
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,814,198 (+)NCBI
RefSeq Acc Id: XR_005488882
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,707,498 (+)NCBI
RefSeq Acc Id: XR_005488883
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,627,476 (+)NCBI
RefSeq Acc Id: XR_005488884
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,628,447 (+)NCBI
RefSeq Acc Id: XR_005488885
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,628,421 (+)NCBI
RefSeq Acc Id: XR_005488886
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.29103,520,452 - 103,628,429 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100398   ⟸   NM_001106928
- Sequence:
RefSeq Acc Id: XP_008765589   ⟸   XM_008767367
- Peptide Label: isoform X1
- UniProtKB: P09760 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451874   ⟸   XM_017596385
- Peptide Label: isoform X7
- UniProtKB: F1LPI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000021758   ⟸   ENSRNOT00000021758
RefSeq Acc Id: ENSRNOP00000053268   ⟸   ENSRNOT00000056430
RefSeq Acc Id: XP_038939363   ⟸   XM_039083435
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038939362   ⟸   XM_039083434
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939375   ⟸   XM_039083447
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038939376   ⟸   XM_039083448
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038939374   ⟸   XM_039083446
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038939373   ⟸   XM_039083445
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038939359   ⟸   XM_039083431
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939361   ⟸   XM_039083433
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939360   ⟸   XM_039083432
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939364   ⟸   XM_039083436
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038939369   ⟸   XM_039083441
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038939370   ⟸   XM_039083442
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038939367   ⟸   XM_039083439
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038939366   ⟸   XM_039083438
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038939372   ⟸   XM_039083444
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038939368   ⟸   XM_039083440
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038939371   ⟸   XM_039083443
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000090379   ⟸   ENSRNOT00000097737
RefSeq Acc Id: ENSRNOP00000077379   ⟸   ENSRNOT00000117309
RefSeq Acc Id: ENSRNOP00000095206   ⟸   ENSRNOT00000112759
Protein Domains
F-BAR   Protein kinase   SH2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306273 AgrOrtholog
Ensembl Genes ENSRNOG00000015898 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021758 UniProtKB/TrEMBL
  ENSRNOP00000053268 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021758 UniProtKB/TrEMBL
  ENSRNOT00000056430 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fer_F-BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fes/Fps/Fer_SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr-prot_kinase_Fes/Fps UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 301737 ENTREZGENE
PANTHER PTHR24418:SF227 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fer PhenoGen
PIRSF TyrPK_fps UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TyrKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55550 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140TAC4_RAT UniProtKB/TrEMBL
  F1LPI8 ENTREZGENE, UniProtKB/TrEMBL
  FER_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary F1MA12 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Fer  FER tyrosine kinase  Fer  fer (fps/fes related) tyrosine kinase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-07-09 Fer  fer (fps/fes related) tyrosine kinase  Fert2  fer (fms/fps related) protein kinase, testis specific 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-02-07 Fert2  fer (fms/fps related) protein kinase, testis specific 2  Fert2_predicted  fer (fms/fps related) protein kinase, testis specific 2 (predicted)  Symbol and Name updated 1299863 APPROVED
2007-02-07 Fert2_predicted  fer (fms/fps related) protein kinase, testis specific 2 (predicted)  Flk_retired  tyrosine protein kinase FLK  Data Merged 737654 APPROVED
2007-02-07 Flk_retired    Flk  tyrosine protein kinase FLK  Symbol withdrawn 1299863 PROVISIONAL