Cd2ap (CD2-associated protein) - Rat Genome Database

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Gene: Cd2ap (CD2-associated protein) Rattus norvegicus
Analyze
Symbol: Cd2ap
Name: CD2-associated protein
RGD ID: 727803
Description: Enables several functions, including beta-catenin binding activity; cadherin binding activity; and protein C-terminus binding activity. Involved in several processes, including proteasome-mediated ubiquitin-dependent protein catabolic process; regulation of receptor-mediated endocytosis; and vesicle organization. Located in cell leading edge; endocytic vesicle; and perinuclear region of cytoplasm. Part of protein-containing complex. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis and focal segmental glomerulosclerosis 3. Orthologous to human CD2AP (CD2 associated protein); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CMS
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2918,086,744 - 18,182,744 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl918,086,984 - 18,182,199 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx926,673,658 - 26,770,708 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0931,748,203 - 31,845,260 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0930,039,092 - 30,134,950 (+)NCBIRnor_WKY
Rnor_6.0920,794,680 - 20,858,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,765,296 - 20,858,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0919,659,503 - 19,720,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4913,827,015 - 13,888,338 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1913,824,339 - 13,885,656 (+)NCBI
Celera915,825,287 - 15,886,480 (+)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. CD2-associated protein haploinsufficiency is linked to glomerular disease susceptibility. Kim JM, etal., Science. 2003 May 23;300(5623):1298-300.
3. The c-Cbl/CD2AP complex regulates VEGF-induced endocytosis and degradation of Flt-1 (VEGFR-1). Kobayashi S, etal., FASEB J 2004 May;18(7):929-31. Epub 2004 Mar 04.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. CD2AP contributes to cell migration and adhesion in cultured gastric epithelium. Mustonen H, etal., Biochem Biophys Res Commun. 2005 Jul 1;332(2):426-32.
6. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
7. CD2AP expression in a renal ischemia/reperfusion injury model and analysis of its related genes using overexpression and RNA interference technique. Nishimura S, etal., Am J Nephrol. 2005 Jul-Aug;25(4):373-81. Epub 2005 Jun 25.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Differential interactions between transforming growth factor-beta3/TbetaR1, TAB1, and CD2AP disrupt blood-testis barrier and Sertoli-germ cell adhesion. Xia W, etal., J Biol Chem. 2006 Jun 16;281(24):16799-813. Epub 2006 Apr 13.
Additional References at PubMed
PMID:8889548   PMID:10339567   PMID:10913159   PMID:15331416   PMID:15924139   PMID:17020880   PMID:17667985   PMID:18753381   PMID:19056867   PMID:21911934   PMID:22809625   PMID:22891260  
PMID:23376485   PMID:23533145   PMID:23793062   PMID:24471428   PMID:25468996   PMID:27044754   PMID:27076424   PMID:28235806   PMID:31413325   PMID:35172672  


Genomics

Comparative Map Data
Cd2ap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2918,086,744 - 18,182,744 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl918,086,984 - 18,182,199 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx926,673,658 - 26,770,708 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0931,748,203 - 31,845,260 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0930,039,092 - 30,134,950 (+)NCBIRnor_WKY
Rnor_6.0920,794,680 - 20,858,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,765,296 - 20,858,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0919,659,503 - 19,720,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4913,827,015 - 13,888,338 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1913,824,339 - 13,885,656 (+)NCBI
Celera915,825,287 - 15,886,480 (+)NCBICelera
Cytogenetic Map9q13NCBI
CD2AP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38647,477,789 - 47,627,263 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl647,477,789 - 47,627,263 (+)EnsemblGRCh38hg38GRCh38
GRCh37647,445,525 - 47,594,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36647,553,484 - 47,702,958 (+)NCBINCBI36Build 36hg18NCBI36
Build 34647,553,898 - 47,702,606NCBI
Celera649,001,627 - 49,151,084 (+)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef647,172,874 - 47,322,780 (+)NCBIHuRef
CHM1_1647,448,327 - 47,597,835 (+)NCBICHM1_1
T2T-CHM13v2.0647,318,653 - 47,468,952 (+)NCBIT2T-CHM13v2.0
Cd2ap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391743,059,857 - 43,187,595 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1743,103,842 - 43,187,556 (-)EnsemblGRCm39 Ensembl
GRCm381742,748,887 - 42,876,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1742,792,951 - 42,876,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv371742,929,900 - 43,013,373 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361742,256,435 - 42,352,155 (-)NCBIMGSCv36mm8
Celera1746,201,889 - 46,261,450 (-)NCBICelera
Cytogenetic Map17B3NCBI
Cd2ap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543711,983,311 - 12,091,100 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543712,005,399 - 12,087,014 (+)NCBIChiLan1.0ChiLan1.0
CD2AP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1648,328,836 - 48,474,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl648,328,863 - 48,474,163 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0647,065,284 - 47,210,746 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CD2AP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11215,538,215 - 15,683,619 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1215,538,356 - 15,681,011 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1215,569,237 - 15,714,616 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01216,041,717 - 16,186,523 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1216,041,451 - 16,186,100 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11215,549,899 - 15,695,706 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01215,642,957 - 15,788,194 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01215,789,659 - 15,935,714 (+)NCBIUU_Cfam_GSD_1.0
Cd2ap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494650,972,198 - 51,069,620 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647612,890,595 - 12,989,046 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD2AP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl742,218,290 - 42,332,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1742,218,016 - 42,332,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2748,870,223 - 48,952,250 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD2AP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11724,664,245 - 24,815,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1724,663,872 - 24,815,829 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604447,487,056 - 47,639,257 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd2ap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475413,420,603 - 13,511,523 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475413,420,594 - 13,511,672 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
AI010435  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2918,182,419 - 18,182,545 (+)MAPPERmRatBN7.2
Rnor_6.0920,861,620 - 20,861,745NCBIRnor6.0
Rnor_5.0919,724,135 - 19,724,260UniSTSRnor5.0
RGSC_v3.4913,891,520 - 13,891,645UniSTSRGSC3.4
Celera915,889,662 - 15,889,787UniSTS
RH 3.4 Map9104.9UniSTS
Cytogenetic Map9q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000016291
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 57 41 19 41 6 6 74 35 41 11 6
Low 2 2 5 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_181475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY114147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY205155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA506385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA508086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA513011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB545525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK359466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO386882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN937610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV718887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV727927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY312051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000016291   ⟹   ENSRNOP00000016291
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl918,117,462 - 18,180,673 (+)Ensembl
Rnor_6.0 Ensembl920,765,296 - 20,858,504 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107057   ⟹   ENSRNOP00000086646
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl918,087,097 - 18,180,673 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120136   ⟹   ENSRNOP00000088324
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl918,086,984 - 18,182,199 (+)Ensembl
RefSeq Acc Id: NM_181475   ⟹   NP_852140
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2918,086,744 - 18,182,744 (+)NCBI
Rnor_6.0920,794,680 - 20,858,438 (+)NCBI
Rnor_5.0919,659,503 - 19,720,953 (+)NCBI
RGSC_v3.4913,827,015 - 13,888,338 (+)RGD
Celera915,825,287 - 15,886,480 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083538   ⟹   XP_038939466
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2918,086,766 - 18,182,739 (+)NCBI
RefSeq Acc Id: XM_039083539   ⟹   XP_038939467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2918,090,113 - 18,182,739 (+)NCBI
RefSeq Acc Id: XM_039083540   ⟹   XP_038939468
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2918,115,986 - 18,182,739 (+)NCBI
RefSeq Acc Id: XM_039083541   ⟹   XP_038939469
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2918,086,765 - 18,160,195 (+)NCBI
RefSeq Acc Id: XR_005488895
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2918,086,766 - 18,166,769 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_852140   ⟸   NM_181475
- UniProtKB: Q7TSS5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016291   ⟸   ENSRNOT00000016291
RefSeq Acc Id: XP_038939469   ⟸   XM_039083541
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939466   ⟸   XM_039083538
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038939467   ⟸   XM_039083539
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939468   ⟸   XM_039083540
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000088324   ⟸   ENSRNOT00000120136
RefSeq Acc Id: ENSRNOP00000086646   ⟸   ENSRNOT00000107057
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LRS8-F1-model_v2 AlphaFold F1LRS8 1-637 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727803 AgrOrtholog
BioCyc Gene G2FUF-28096 BioCyc
Ensembl Genes ENSRNOG00000011987 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016291 ENTREZGENE
  ENSRNOP00000016291.4 UniProtKB/TrEMBL
  ENSRNOP00000086646.1 UniProtKB/TrEMBL
  ENSRNOP00000088324 ENTREZGENE
  ENSRNOP00000088324.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016291 ENTREZGENE
  ENSRNOT00000016291.4 UniProtKB/TrEMBL
  ENSRNOT00000107057.1 UniProtKB/TrEMBL
  ENSRNOT00000120136 ENTREZGENE
  ENSRNOT00000120136.1 UniProtKB/TrEMBL
InterPro CD2AP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD2AP_SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD2AP_SH3_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD2AP_SH_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316258 UniProtKB/TrEMBL
NCBI Gene 316258 ENTREZGENE
PANTHER PTHR14167:SF23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd2ap PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A6A6_RAT UniProtKB/TrEMBL
  A0A8I6GF65_RAT UniProtKB/TrEMBL
  A0A8L2Q7T7_RAT UniProtKB/TrEMBL
  CD2AP_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TSS5 ENTREZGENE
  Q80ZE7_RAT UniProtKB/TrEMBL
UniProt Secondary Q7TSS5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Cd2ap  CD2-associated protein      Symbol and Name status set to approved 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains protein contains three SH3 domains 1302417
gene_homology rat sequence shows 84% homology to the human sequence and 92% homology to the mouse sequence 1302417
gene_physical_interaction the second SH3 domain is responsible for binding c-Cbl and Flt-1 in rat sinusoidal endothelial cells 1302417