Prom1 (prominin 1) - Rat Genome Database

Name: Prom1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Prom1 (prominin 1) Rattus norvegicus

Analyze

Symbol:

Prom1

Name:

prominin 1

RGD ID:

69367

Description:

Predicted to enable actinin binding activity; cadherin binding activity; and cholesterol binding activity. Predicted to be involved in several processes, including glomerular epithelial cell differentiation; photoreceptor cell maintenance; and retina morphogenesis in camera-type eye. Predicted to be located in several cellular components, including endoplasmic reticulum-Golgi intermediate compartment; extracellular exosome; and photoreceptor outer segment membrane. Predicted to be active in several cellular components, including apical plasma membrane; microvillus; and prominosome. Used to study diabetes mellitus. Human ortholog(s) of this gene implicated in cone-rod dystrophy 12; macular degeneration; and retinitis pigmentosa 41. Orthologous to human PROM1 (prominin 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CD133; fudenine; MGC156650; Prom; prominin; prominin-1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PROM1 (prominin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Prom1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prom1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PROM1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PROM1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prom1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PROM1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PROM1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prom1 (prominin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Prom1 (prominin 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PROM1 (prominin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prom1b (prominin 1 b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prom1a (prominin 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	prmn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG45067	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	prominin-like	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	prom	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prom1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	66,989,545 - 67,094,534 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	66,990,160 - 67,094,527 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	71,398,422 - 71,501,438 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	72,670,309 - 72,774,669 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	69,108,846 - 69,211,863 (+)	NCBI	Rnor_WKY
Rnor_6.0	14	71,532,321 - 71,637,400 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	71,533,063 - 71,637,417 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	71,573,130 - 71,668,097 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	72,122,986 - 72,230,453 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	72,125,409 - 72,232,843 (+)	NCBI
Celera	14	65,949,815 - 66,052,606 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colonic Neoplasms (ISO)

Colorectal Neoplasms (ISO)

cone-rod dystrophy (ISO)

cone-rod dystrophy 12 (ISO)

cone-rod dystrophy 2 (ISO)

diabetes mellitus (IDA)

fundus dystrophy (ISO)

genetic disease (ISO)

glioblastoma (ISO)

hepatocellular carcinoma (ISO)

Joubert syndrome (ISO)

Leber congenital amaurosis 1 (ISO)

macular degeneration (ISO)

Neoplastic Cell Transformation (ISO)

Retinal Macular Dystrophy 2 (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 41 (ISO)

Stargardt disease (ISO)

Stargardt Disease 1 (ISO)

Stargardt Disease 4 (ISO)

transitional cell carcinoma (ISO)

Usher syndrome (ISO)

uterine carcinosarcoma (ISO)

Uterine Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(20S)-ginsenoside Rg3 (ISO)

(S)-naringenin (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2-acetamidofluorene (EXP)

2-butoxyethanol (ISO)

3,5-diethoxycarbonyl-1,4-dihydrocollidine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

5-azacytidine (EXP)

5-fluorouracil (ISO)

acetamide (EXP)

acrylamide (ISO)

actinomycin D (ISO)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

apigenin (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

auramine O (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bexarotene (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butane-2,3-dione (ISO)

butyric acid (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

carnosic acid (ISO)

chloroprene (ISO)

chlorpyrifos (ISO)

choline (ISO)

ciprofloxacin (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

copper(II) sulfate (ISO)

crizotinib (ISO)

crocidolite asbestos (ISO)

curcumin (ISO)

cyclosporin A (ISO)

daunorubicin (EXP)

diallyl trisulfide (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dichloroacetic acid (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

eckol (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (EXP,ISO)

ethyl methanesulfonate (ISO)

fisetin (ISO)

folic acid (ISO)

furan (EXP,ISO)

genistein (ISO)

glycidol (EXP)

inulin (ISO)

irinotecan (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lupeol (ISO)

melatonin (ISO)

methamphetamine (EXP)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

microcystin-LR (EXP)

Muraglitazar (EXP)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP,ISO)

N-nitrosodimethylamine (ISO)

oxaliplatin (EXP)

paclitaxel (ISO)

pentane-2,3-dione (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

phenethyl caffeate (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

propiconazole (ISO)

pyrazinecarboxamide (EXP)

quercetin (ISO)

ritodrine (ISO)

rotenone (ISO)

SB 431542 (ISO)

SCH 23390 (EXP)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (EXP,ISO)

sodium fluoride (ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (EXP,ISO)

Tesaglitazar (EXP)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

toluene (EXP)

topotecan (EXP)

tributylstannane (ISO)

Triptolide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (EXP,ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

camera-type eye photoreceptor cell differentiation (IBA,ISO)

glomerular parietal epithelial cell differentiation (ISO)

photoreceptor cell maintenance (IBA,ISO)

podocyte differentiation (ISO)

positive regulation of nephron tubule epithelial cell differentiation (ISO)

retina layer formation (ISO)

retina morphogenesis in camera-type eye (ISO)

Cellular Component

apical plasma membrane (IBA,ISO)

brush border (ISO)

cell projection (ISO)

cell surface (IBA,ISO)

cilium (IBA,ISO)

endoplasmic reticulum (ISO)

endoplasmic reticulum-Golgi intermediate compartment (ISO)

extracellular exosome (ISO)

extracellular space (ISO)

microvillus (IBA,ISO)

microvillus membrane (IEA)

photoreceptor outer segment (ISO)

photoreceptor outer segment membrane (ISO)

plasma membrane (ISO)

prominosome (IBA,ISO)

stereocilium (ISO)

Molecular Function

actinin binding (ISO)

cadherin binding (ISO)

cholesterol binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Hepatocyte-Specific Arid1a Deficiency Initiates Mouse Steatohepatitis and Hepatocellular Carcinoma.	Fang JZ, etal., PLoS One. 2015 Nov 16;10(11):e0143042. doi: 10.1371/journal.pone.0143042. eCollection 2015.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation
10.	Fudenine, a C-terminal truncated rat homologue of mouse prominin, is blood glucose-regulated and can up-regulate the expression of GAPDH.	Zhu G, etal., Biochem Biophys Res Commun 2001 Mar 9;281(4):951-6.

Additional References at PubMed

PMID:8889548	PMID:9356465	PMID:10587575	PMID:11467842	PMID:12042327	PMID:12477932	PMID:12832703	PMID:15316084	PMID:15976444	PMID:16502470	PMID:16809613	PMID:16885410
PMID:16892058	PMID:17109118	PMID:17118341	PMID:17187413	PMID:17283184	PMID:17498271	PMID:17922643	PMID:18577527	PMID:18654668	PMID:19056867	PMID:19092120	PMID:19190083
PMID:19199708	PMID:19228982	PMID:19384922	PMID:21082674	PMID:21162801	PMID:23376485	PMID:23533145	PMID:24556617	PMID:27166505	PMID:29076766	PMID:31759629

Genomics

Comparative Map Data

Prom1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	66,989,545 - 67,094,534 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	66,990,160 - 67,094,527 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	71,398,422 - 71,501,438 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	72,670,309 - 72,774,669 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	69,108,846 - 69,211,863 (+)	NCBI	Rnor_WKY
Rnor_6.0	14	71,532,321 - 71,637,400 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	71,533,063 - 71,637,417 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	71,573,130 - 71,668,097 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	72,122,986 - 72,230,453 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	72,125,409 - 72,232,843 (+)	NCBI
Celera	14	65,949,815 - 66,052,606 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

PROM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	15,968,228 - 16,084,023 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	15,963,076 - 16,084,378 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	15,969,851 - 16,085,646 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	15,578,955 - 15,686,664 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	15,646,125 - 15,753,835	NCBI
Celera	4	16,434,397 - 16,550,164 (-)	NCBI		Celera
Cytogenetic Map	4	p15.32	NCBI
HuRef	4	15,319,438 - 15,435,190 (-)	NCBI		HuRef
CHM1_1	4	15,967,639 - 16,083,574 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	15,949,919 - 16,107,700 (-)	NCBI		T2T-CHM13v2.0

Prom1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	44,150,963 - 44,260,850 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	44,150,962 - 44,259,374 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	43,993,621 - 44,102,047 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	43,993,620 - 44,102,032 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	44,384,861 - 44,492,975 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	44,281,870 - 44,389,929 (-)	NCBI		MGSCv36	mm8
Celera	5	41,422,565 - 41,530,564 (-)	NCBI		Celera
Cytogenetic Map	5	B3	NCBI

Prom1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955480	7,961,389 - 8,059,589 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955480	7,955,501 - 8,059,537 (+)	NCBI	ChiLan1.0	ChiLan1.0

PROM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	4	16,444,172 - 16,587,747 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	10,405,299 - 10,519,518 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	15,702,155 - 15,816,070 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	15,702,159 - 15,815,454 (-)	Ensembl	panpan1.1		panPan2

PROM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	64,229,487 - 64,362,346 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	64,260,685 - 64,382,009 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	66,778,870 - 66,880,110 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	64,707,547 - 64,840,616 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	64,732,612 - 64,855,496 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	64,228,808 - 64,330,214 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	64,432,846 - 64,534,046 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	64,793,321 - 64,894,543 (+)	NCBI		UU_Cfam_GSD_1.0

Prom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	58,176,590 - 58,315,536 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	11,878,012 - 12,018,177 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936477	11,878,261 - 12,017,228 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PROM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	11,215,663 - 11,317,312 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	11,215,659 - 11,331,442 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	10,866,626 - 10,987,214 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PROM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	34,093,699 - 34,243,630 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	34,129,532 - 34,243,778 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	80,860,464 - 80,977,347 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prom1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	15,771,286 - 15,886,348 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	15,765,162 - 15,886,023 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Prom1
521 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	192
Count of miRNA genes:	132
Interacting mature miRNAs:	163
Transcripts:	ENSRNOT00000004231
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat

Markers in Region

RH144231

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	67,094,216 - 67,094,488 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	71,637,083 - 71,637,354	NCBI	Rnor6.0
Rnor_5.0	14	71,667,781 - 71,668,052	UniSTS	Rnor5.0
RGSC_v3.4	14	72,230,137 - 72,230,408	UniSTS	RGSC3.4
Celera	14	66,052,290 - 66,052,561	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	14	15	7	9	7			70	35	30	11
Low		29	41	33	10	33	8	11	4		11		8
Below cutoff			1	1		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001110137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_021751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF263368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF386758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY262731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC126091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI286840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB780214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ871262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV765242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000004231 ⟹ ENSRNOP00000004231

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	66,990,160 - 67,094,527 (+)	Ensembl
Rnor_6.0 Ensembl	14	71,533,063 - 71,637,393 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082592 ⟹ ENSRNOP00000071297

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	66,999,156 - 67,094,527 (+)	Ensembl
Rnor_6.0 Ensembl	14	71,542,057 - 71,637,393 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083701 ⟹ ENSRNOP00000069832

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	66,990,160 - 67,094,527 (+)	Ensembl
Rnor_6.0 Ensembl	14	71,542,059 - 71,637,417 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084274 ⟹ ENSRNOP00000071743

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	66,990,557 - 67,025,848 (+)	Ensembl
Rnor_6.0 Ensembl	14	71,533,460 - 71,568,622 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084322 ⟹ ENSRNOP00000068615

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	66,990,160 - 67,086,876 (+)	Ensembl
Rnor_6.0 Ensembl	14	71,542,208 - 71,631,487 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113497 ⟹ ENSRNOP00000080859

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	66,990,160 - 67,087,704 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118243 ⟹ ENSRNOP00000097023

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	66,990,160 - 67,086,876 (+)	Ensembl

RefSeq Acc Id:

NM_001110137 ⟹ NP_001103607

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,999,156 - 67,094,533 (+)	NCBI
Rnor_6.0	14	71,542,057 - 71,637,399 (+)	NCBI
Rnor_5.0	14	71,573,130 - 71,668,097 (+)	NCBI
RGSC_v3.4	14	72,122,986 - 72,230,453 (+)	RGD
Celera	14	65,958,787 - 66,052,606 (+)	NCBI

Sequence:

show sequence

AGATGTTACTTTGAGTGAATGACCTCCTTGGAGACCATTCTTCTGCTCCCCTTCTTACCAGCCA
GGAGGCAGAAGATTCCACAGGTCCAGGAAAGACATAATTCCCTTGAGCTTCCAGAAAGTACCTT
ATGCCTGGGGGATCAGGCCAACTATGGCTCTCGTATTCAGTGTCCTGCTGCTACTGGGGCTGTG
TGGAAAGATGGCTTCAGGAGGTCAGCCTGCATTCGATAACACTCCCGGGGCTTTGAATTATGAA
TTGCCTACCACAGAATATGAGACCCAAGACACCTTCAATGCTGGGATTATTGACCCTCTCTACC
AAATGGTGCACATCTTCCTCAACGTGGTCCAGCCGAATGACTTCCCTCAAGATTTGGTCAAAAA
ACTCATACAGAAGAGGTTTGACATCTCGGTTGATACCAAGGAGGTCGCCATCTATGAAATTGGA
GTTCTTATCTGCGTCATCCTGGGCCTGCTGTTCATTTTCCTCATGCCCCTGGTGGGCTTCTTCT
TTTGTATGTGCCGTTGCTGTAACAAATGCGGCGGAGAAATGCACCAGCGGCAGAAGCAGAACGA
GTCGTGCCGGAGGAAGTGCTTAGCCATCTCCCTCTTGCTGATTTGTCTGCTCATGAGTCTTGGC
ATCGCGTTTGGCTTTGTGGCCAACCAGCAGACAAGGACTCGGATCCAAAGGACCCAGAAGCTGG
CAGAGAGCAATTACAGAGACTTGCGGGCTCTCCTGACTGAAGCCCCAAAGCAAATCGACTATAT
TCTGGGGCAATACAACACAACCAAGAACAAGGCATTCTCAGACCTGGACAGTATCGATTCCGTG
CTGGGAGGCAGAATAAAGGGCCAACTAAAACCCAAAGTTACTCCTGTTCTCGAAGAGATTAAGG
CCATGGCAACAGCCATTAGACAGACCAAGGATGCCCTGCAGAACATGAGCAGCAGTCTGAAAAG
TCTACGTGACGCAAGCACCCAGCTCAGTACCAACCTGACGTCTGTGAGAAACAGCATCGAGAAT
TCACTCAACAGCAACGACTGTGCTTCAGACCCAGCCAGCAAGATCTGTGATAGCCTCAGACCAC
AGCTGAGCAATCTGGGGAGCAACCACAACGGAAGTCAGCTCCCATCAGTGGACAGGGAACTCAA
CACCGTTAATGATGTCGACAGAACCGATCTGGAGAGCCTCGTCAAAAGGGGGTATATGTCGATT
GATGAAATACCCAATATGATACAAAACCAAACTGGGGATGTCATCAAAGATGTCAAAAAGACCT
TGGATTCTGTTAGCTCCAAGGTTAAGAACATGAGCCAAAGTATTCCTGTCGAGGAGGTGCTGCT
TCAGTTCTCCCACTACCTTAATGACAGCAACAGGTACATCCACGAGTCGCTGCCCAGAGTGGAA
GAATATGACTCATACTGGTGGCTGGGTGGCTTAATAGTCTGCTTCCTGCTGACCCTCATTGTGA
CTTTCTTTTACCTGGGCTTGCTGTGTGGTGTGTTTGGCTATGACAAGCGTGCCACCCCAACCAG
AAGAGGCTGCGTGTCCAACACTGGAGGCATCTTCCTCATGGCTGGGGTTGGATTCAGCTTCCTT
TTTTGCTGGATATTGATGATCCTTGTGGTTCTTACTTTTGTTGTTGGTGCAAATGTGGAAAAGT
TGCTCTGTGAACCTTATGAAAACAAGAAATTACTACAGGTTTTGGATACTCCCTACCTGCTCAA
CGATCAATGGCAATTCTATCTCTCTGGCATACTACTCAAAAACCCAGACATTAACATGACCTTT
GAGCAAGTCTACAGGGATTGCAAAAGAGGTCGAGGAGTGTATGCCACTTTTCAGCTTGAGAATG
TCTTCAACATCACTGAGAATTTCAACATTGAGAGGCTTTCTGAAGACATAGTGAAGGAGTTGGA
AAAGCTGAATGTGAACATTGACAGCATCGAACTGTTGGACAAAACAGGAAGGAAGAGCCTCGAG
GACTTTGCACAATCTGGGATAGATAGAATCAATTATTCCATGTACTTACAGGAGGCTGAGAAAC
CCCCTACCAAAGTGGACCTGCTGACATTTGCCTCTTTTCTGGAAACAGAAGCAAACCAGTTGCC
TGACGGAAATCTGAAACAGGCCTTCTTAATGGATGCACAGAACATTCGAGCCATCCACCAGCAG
CACGTCCCTCCTGTGCAGCAGTCACTGAATTCATTAAAACAAAGTGTCTGGGCCCTTAAGCAAA
CAAGCAGCAAGTTGCCGGAGGAAGTGAAGAAGGTCCTTGCCTCTTTGGATTCTGCTCAGCATTT
CCTCACCAGTAACCTCTCCTCCATCGTTATTGGAGAAACAAAGAAGTTTGGGAGAACAATAATA
GGCTACTTTGAACATTATCTGCAATGGGTCTTGTACGCCATCACAGAGAAGATGACATCCTGCA
AACCCATGATTACAGCAATGGACTCTGCTGTTAATGGCATTCTGTGTAGCTATGTTGCTGACCC
TCTGAATCTGTTCTGGTTCGGCATAGGGAAAGCCACCATGCTCTTACTTCCGGCTGTAATCATC
GCTATCAAGTTGGCCAAGTACTATCGCAGGATGGATTCAGAGGATGTATATGATGACCCGTCTC
GATACTGACAACTGAAGTGGAAATTGCTTGAACATCAAGATAGCTAACTCGGAAAGAATCCCAG
ACTTTGGATAGTTTCTGAGTCTTCTAGAATTTTCCAAGAAGAAACCATGGTGGCAAATGCGGAG
ACTCGGGCGGGCACTGGGAACACAGCACAGTGGTCTTAGGGAGGTGCTTTGTCAGGAATGAACA
GTCATGGTTATAATCCACGTTTCCATTGCTACTCACGAATGATTCTCTTCTGTTTTGTTTTTAA
AATTTTTTTACACTGAATTTCTATTTAGACACTAAAACATATAGGGGTGCTTGTCACCCGGATA
CATTTATCTGTGAGCCAGCTATTCGGATGTCATGGCTGGGTACCTAACTTACTTCCATATGTGA
AGTGTGCTAAACTCAAACCAGTTTACAGAAACGATGTATTTTGTGTATAGTAAATTGTATATTC
ACCCTTTTACCACGGCCGGTTTTTTAAACAAATGAATACTCTAGATTTTTCTTCCAAATGAGGT
TACTGTTGGGGTGGGGTTGACTTAGTGATGCTGTAGAAGGGAATCCGCATGCACTAAAAAGTGT
GTCTGCCTAAAAGTGTGTACAGCAGGCACAACCTTCCTTGTGGATTTCCGTCTGCTCACTGCAG
ATCTGCCTGTGGTTTAGAAATAGAATTCAAGAGCCATCAAGGAGTGACCAGCTTGACACCACTG
CCAAATTCAGAATGAGGAACCTTGAGAGAAGGAACTGTCGCTCAGCCAGAAGCAGATGAAGCCA
CTGGTCCTGGTTCACAGTTTAGTGTCATGCTCTGGTTTATAAGGATGGGCATTACGTTCGGTGT
TATCTGGTTATCTGCGAGATTCTAAACCGAGGTGCAAGAGCTCCTATCCTGATTCTGAGATTTG
AAATAAAGCATGAATGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_021751 ⟹ NP_068519

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,990,160 - 67,094,533 (+)	NCBI
Rnor_6.0	14	71,533,063 - 71,637,399 (+)	NCBI
Rnor_5.0	14	71,573,130 - 71,668,097 (+)	NCBI
RGSC_v3.4	14	72,122,986 - 72,230,453 (+)	RGD
Celera	14	65,949,815 - 66,052,606 (+)	RGD

Sequence:

show sequence

TGGGAGCCCAGCCTGGAGGCGAGGGGCTGGCGGGTTCCAAGACCCAGGCGGGAGCTGGACGGGA
GCGAGATGTTACTTTGAGTGAATGACCTCCTTGGAGACCATTCTTCTGCTCCCCTTCTTACCAG
CCAGGAGGCAGAAGATTCCACAGGTCCAGGAAAGACATAATTCCCTTGAGCTTCCAGAAAGTAC
CTTATGCCTGGGGGATCAGGCCAACTATGGCTCTCGTATTCAGTGTCCTGCTGCTACTGGGGCT
GTGTGGAAAGATGGCTTCAGGAGGTCAGCCTGCATTCGATAACACTCCCGGGGCTTTGAATTAT
GAATTGCCTACCACAGAATATGAGACCCAAGACACCTTCAATGCTGGGATTATTGACCCTCTCT
ACCAAATGGTGCACATCTTCCTCAACGTGGTCCAGCCGAATGACTTCCCTCAAGATTTGGTCAA
AAAACTCATACAGAAGAGGTTTGACATCTCGGTTGATACCAAGGAGGTCGCCATCTATGAAATT
GGAGTTCTTATCTGCGTCATCCTGGGCCTGCTGTTCATTTTCCTCATGCCCCTGGTGGGCTTCT
TCTTTTGTATGTGCCGTTGCTGTAACAAATGCGGCGGAGAAATGCACCAGCGGCAGAAGCAGAA
CGAGTCGTGCCGGAGGAAGTGCTTAGCCATCTCCCTCTTGCTGATTTGTCTGCTCATGAGTCTT
GGCATCGCGTTTGGCTTTGTGGCCAACCAGCAGACAAGGACTCGGATCCAAAGGACCCAGAAGC
TGGCAGAGAGCAATTACAGAGACTTGCGGGCTCTCCTGACTGAAGCCCCAAAGCAAATCGACTA
TATTCTGGGGCAATACAACACAACCAAGAACAAGGCATTCTCAGACCTGGACAGTATCGATTCC
GTGCTGGGAGGCAGAATAAAGGGCCAACTAAAACCCAAAGTTACTCCTGTTCTCGAAGAGATTA
AGGCCATGGCAACAGCCATTAGACAGACCAAGGATGCCCTGCAGAACATGAGCAGCAGTCTGAA
AAGTCTACGTGACGCAAGCACCCAGCTCAGTACCAACCTGACGTCTGTGAGAAACAGCATCGAG
AATTCACTCAACAGCAACGACTGTGCTTCAGACCCAGCCAGCAAGATCTGTGATAGCCTCAGAC
CACAGCTGAGCAATCTGGGGAGCAACCACAACGGAAGTCAGCTCCCATCAGTGGACAGGGAACT
CAACACCGTTAATGATGTCGACAGAACCGATCTGGAGAGCCTCGTCAAAAGGGGGTATATGTCG
ATTGATGAAATACCCAATATGATACAAAACCAAACTGGGGATGTCATCAAAGATGTCAAAAAGA
CCTTGGATTCTGTTAGCTCCAAGGTTAAGAACATGAGCCAAAGTATTCCTGTCGAGGAGGTGCT
GCTTCAGTTCTCCCACTACCTTAATGACAGCAACAGGTACATCCACGAGTCGCTGCCCAGAGTG
GAAGAATATGACTCATACTGGTGGCTGGGTGGCTTAATAGTCTGCTTCCTGCTGACCCTCATTG
TGACTTTCTTTTACCTGGGCTTGCTGTGTGGTGTGTTTGGCTATGACAAGCGTGCCACCCCAAC
CAGAAGAGGCTGCGTGTCCAACACTGGAGGCATCTTCCTCATGGCTGGGGTTGGATTCAGCTTC
CTTTTTTGCTGGATATTGATGATCCTTGTGGTTCTTACTTTTGTTGTTGGTGCAAATGTGGAAA
AGTTGCTCTGTGAACCTTATGAAAACAAGAAATTACTACAGGTTTTGGATACTCCCTACCTGCT
CAACGATCAATGGCAATTCTATCTCTCTGGCATACTACTCAAAAACCCAGACATTAACATGACC
TTTGAGCAAGTCTACAGGGATTGCAAAAGAGGTCGAGGAGTGTATGCCACTTTTCAGCTTGAGA
ATGTCTTCAACATCACTGAGAATTTCAACATTGAGAGGCTTTCTGAAGACATAGTGAAGGAGTT
GGAAAAGCTGAATGTGAACATTGACAGCATCGAACTGTTGGACAAAACAGGAAGGAAGAGCCTC
GAGGACTTTGCACAATCTGGGATAGATAGAATCAATTATTCCATGTACTTACAGGAGGCTGAGA
AACCCCCTACCAAAGTGGACCTGCTGACATTTGCCTCTTTTCTGGAAACAGAAGCAAACCAGTT
GCCTGACGGAAATCTGAAACAGGCCTTCTTAATGGATGCACAGAACATTCGAGCCATCCACCAG
CAGCACGTCCCTCCTGTGCAGCAGTCACTGAATTCATTAAAACAAAGTGTCTGGGCCCTTAAGC
AAACAAGCAGCAAGTTGCCGGAGGAAGTGAAGAAGGTCCTTGCCTCTTTGGATTCTGCTCAGCA
TTTCCTCACCAGTAACCTCTCCTCCATCGTTATTGGAGAAACAAAGAAGTTTGGGAGAACAATA
ATAGGCTACTTTGAACATTATCTGCAATGGGTCTTGTACGCCATCACAGAGAAGATGACATCCT
GCAAACCCATGATTACAGCAATGGACTCTGCTGTTAATGGCATTCTGTGTAGCTATGTTGCTGA
CCCTCTGAATCTGTTCTGGTTCGGCATAGGGAAAGCCACCATGCTCTTACTTCCGGCTGTAATC
ATCGCTATCAAGTTGGCCAAGTACTATCGCAGGATGGATTCAGAGGATGTATATGATGATGTTG
AGACTGTACCCATGAAAAATTTGGAAAACGGTAGTAATGGTTATCATAAAGATCATTTATATGG
TGTTCACAATCCTGTTATGACAAGCCCGTCTCGATACTGACAACTGAAGTGGAAATTGCTTGAA
CATCAAGATAGCTAACTCGGAAAGAATCCCAGACTTTGGATAGTTTCTGAGTCTTCTAGAATTT
TCCAAGAAGAAACCATGGTGGCAAATGCGGAGACTCGGGCGGGCACTGGGAACACAGCACAGTG
GTCTTAGGGAGGTGCTTTGTCAGGAATGAACAGTCATGGTTATAATCCACGTTTCCATTGCTAC
TCACGAATGATTCTCTTCTGTTTTGTTTTTAAAATTTTTTTACACTGAATTTCTATTTAGACAC
TAAAACATATAGGGGTGCTTGTCACCCGGATACATTTATCTGTGAGCCAGCTATTCGGATGTCA
TGGCTGGGTACCTAACTTACTTCCATATGTGAAGTGTGCTAAACTCAAACCAGTTTACAGAAAC
GATGTATTTTGTGTATAGTAAATTGTATATTCACCCTTTTACCACGGCCGGTTTTTTAAACAAA
TGAATACTCTAGATTTTTCTTCCAAATGAGGTTACTGTTGGGGTGGGGTTGACTTAGTGATGCT
GTAGAAGGGAATCCGCATGCACTAAAAAGTGTGTCTGCCTAAAAGTGTGTACAGCAGGCACAAC
CTTCCTTGTGGATTTCCGTCTGCTCACTGCAGATCTGCCTGTGGTTTAGAAATAGAATTCAAGA
GCCATCAAGGAGTGACCAGCTTGACACCACTGCCAAATTCAGAATGAGGAACCTTGAGAGAAGG
AACTGTCGCTCAGCCAGAAGCAGATGAAGCCACTGGTCCTGGTTCACAGTTTAGTGTCATGCTC
TGGTTTATAAGGATGGGCATTACGTTCGGTGTTATCTGGTTATCTGCGAGATTCTAAACCGAGG
TGCAAGAGCTCCTATCCTGATTCTGAGATTTGAAATAAAGCATGAATGAACAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_008770211 ⟹ XP_008768433

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,990,070 - 67,094,534 (+)	NCBI
Rnor_6.0	14	71,532,881 - 71,637,400 (+)	NCBI

Sequence:

show sequence

ATCCTCAAACCTCTACCACCAGAGACCCTAGAGGACGTAACAAGTTCTCAGAGTCCTGGGGTCC
GGTAGTCCTGTCTCAGGCACCCTTAGCCAATTCTGGGCGGAGCAGTGGGGCGGGCTCTCACCCA
ATCACCCCTGTGGTGCCCTGGGGTTGGACTTTAAATAATTCATGATTTAAGTGGTGGGAGCCCA
GCCTGGAGGCGAGGGGCTGGCGGGTTCCAAGACCCAGGCGGGAGCTGGACGGGAGCGAGATGTT
ACTTTGAGTGAATGACCTCCTTGGAGACCATTCTTCTGCTCCCCTTCTTACCAGCCAGGAGGCA
GAAGATTCCACAGGTCCAGGAAAGACATAATTCCCTTGAGCTTCCAGAAAGTACCTTATGCCTG
GGGGATCAGGCCAACTATGGCTCTCGTATTCAGTGTCCTGCTGCTACTGGGGCTGTGTGGAAAG
ATGGCTTCAGGAGGTCAGCCTGCATTCGATAACACTCCCGGGGCTTTGAATTATGAATTGCCTA
CCACAGAATATGAGACCCAAGACACCTTCAATGCTGGGATTATTGACCCTCTCTACCAAATGGT
GCACATCTTCCTCAACGTGGTCCAGCCGAATGACTTCCCTCAAGATTTGGTCAAAAAACTCATA
CAGAAGAGGTTTGACATCTCGGTTGATACCAAGGAGCCAGAAAACATAGTCTTGGCTTTGAAGG
TCGCCATCTATGAAATTGGAGTTCTTATCTGCGTCATCCTGGGCCTGCTGTTCATTTTCCTCAT
GCCCCTGGTGGGCTTCTTCTTTTGTATGTGCCGTTGCTGTAACAAATGCGGCGGAGAAATGCAC
CAGCGGCAGAAGCAGAACGAGTCGTGCCGGAGGAAGTGCTTAGCCATCTCCCTCTTGCTGATTT
GTCTGCTCATGAGTCTTGGCATCGCGTTTGGCTTTGTGGCCAACCAGCAGACAAGGACTCGGAT
CCAAAGGACCCAGAAGCTGGCAGAGAGCAATTACAGAGACTTGCGGGCTCTCCTGACTGAAGCC
CCAAAGCAAATCGACTATATTCTGGGGCAATACAACACAACCAAGAACAAGGCATTCTCAGACC
TGGACAGTATCGATTCCGTGCTGGGAGGCAGAATAAAGGGCCAACTAAAACCCAAAGTTACTCC
TGTTCTCGAAGAGATTAAGGCCATGGCAACAGCCATTAGACAGACCAAGGATGCCCTGCAGAAC
ATGAGCAGCAGTCTGAAAAGTCTACGTGACGCAAGCACCCAGCTCAGTACCAACCTGACGTCTG
TGAGAAACAGCATCGAGAATTCACTCAACAGCAACGACTGTGCTTCAGACCCAGCCAGCAAGAT
CTGTGATAGCCTCAGACCACAGCTGAGCAATCTGGGGAGCAACCACAACGGAAGTCAGCTCCCA
TCAGTGGACAGGGAACTCAACACCGTTAATGATGTCGACAGAACCGATCTGGAGAGCCTCGTCA
AAAGGGGGTATATGTCGATTGATGAAATACCCAATATGATACAAAACCAAACTGGGGATGTCAT
CAAAGATGTCAAAAAGACCTTGGATTCTGTTAGCTCCAAGGTTAAGAACATGAGCCAAAGTATT
CCTGTCGAGGAGGTGCTGCTTCAGTTCTCCCACTACCTTAATGACAGCAACAGGTACATCCACG
AGTCGCTGCCCAGAGTGGAAGAATATGACTCATACTGGTGGCTGGGTGGCTTAATAGTCTGCTT
CCTGCTGACCCTCATTGTGACTTTCTTTTACCTGGGCTTGCTGTGTGGTGTGTTTGGCTATGAC
AAGCGTGCCACCCCAACCAGAAGAGGCTGCGTGTCCAACACTGGAGGCATCTTCCTCATGGCTG
GGGTTGGATTCAGCTTCCTTTTTTGCTGGATATTGATGATCCTTGTGGTTCTTACTTTTGTTGT
TGGTGCAAATGTGGAAAAGTTGCTCTGTGAACCTTATGAAAACAAGAAATTACTACAGGTTTTG
GATACTCCCTACCTGCTCAACGATCAATGGCAATTCTATCTCTCTGGCATACTACTCAAAAACC
CAGACATTAACATGACCTTTGAGCAAGTCTACAGGGATTGCAAAAGAGGTCGAGGAGTGTATGC
CACTTTTCAGCTTGAGAATGTCTTCAACATCACTGAGAATTTCAACATTGAGAGGCTTTCTGAA
GACATAGTGAAGGAGTTGGAAAAGCTGAATGTGAACATTGACAGCATCGAACTGTTGGACAAAA
CAGGAAGGAAGAGCCTCGAGGACTTTGCACAATCTGGGATAGATAGAATCAATTATTCCATGTA
CTTACAGGAGGCTGAGAAACCCCCTACCAAAGTGGACCTGCTGACATTTGCCTCTTTTCTGGAA
ACAGAAGCAAACCAGTTGCCTGACGGAAATCTGAAACAGGCCTTCTTAATGGATGCACAGAACA
TTCGAGCCATCCACCAGCAGCACGTCCCTCCTGTGCAGCAGTCACTGAATTCATTAAAACAAAG
TGTCTGGGCCCTTAAGCAAACAAGCAGCAAGTTGCCGGAGGAAGTGAAGAAGGTCCTTGCCTCT
TTGGATTCTGCTCAGCATTTCCTCACCAGTAACCTCTCCTCCATCGTTATTGGAGAAACAAAGA
AGTTTGGGAGAACAATAATAGGCTACTTTGAACATTATCTGCAATGGGTCTTGTACGCCATCAC
AGAGAAGATGACATCCTGCAAACCCATGATTACAGCAATGGACTCTGCTGTTAATGGCATTCTG
TGTAGCTATGTTGCTGACCCTCTGAATCTGTTCTGGTTCGGCATAGGGAAAGCCACCATGCTCT
TACTTCCGGCTGTAATCATCGCTATCAAGTTGGCCAAGTACTATCGCAGGATGGATTCAGAGGA
TGTATATGATGATGTTGAGACTGTACCCATGAAAAATTTGGAAAACGGTAGTAATGGTTATCAT
AAAGATCATTTATATGGTGTTCACAATCCTGTTATGACAAGCCCGTCTCGATACTGACAACTGA
AGTGGAAATTGCTTGAACATCAAGATAGCTAACTCGGAAAGAATCCCAGACTTTGGATAGTTTC
TGAGTCTTCTAGAATTTTCCAAGAAGAAACCATGGTGGCAAATGCGGAGACTCGGGCGGGCACT
GGGAACACAGCACAGTGGTCTTAGGGAGGTGCTTTGTCAGGAATGAACAGTCATGGTTATAATC
CACGTTTCCATTGCTACTCACGAATGATTCTCTTCTGTTTTGTTTTTAAAATTTTTTTACACTG
AATTTCTATTTAGACACTAAAACATATAGGGGTGCTTGTCACCCGGATACATTTATCTGTGAGC
CAGCTATTCGGATGTCATGGCTGGGTACCTAACTTACTTCCATATGTGAAGTGTGCTAAACTCA
AACCAGTTTACAGAAACGATGTATTTTGTGTATAGTAAATTGTATATTCACCCTTTTACCACGG
CCGGTTTTTTAAACAAATGAATACTCTAGATTTTTCTTCCAAATGAGGTTACTGTTGGGGTGGG
GTTGACTTAGTGATGCTGTAGAAGGGAATCCGCATGCACTAAAAAGTGTGTCTGCCTAAAAGTG
TGTACAGCAGGCACAACCTTCCTTGTGGATTTCCGTCTGCTCACTGCAGATCTGCCTGTGGTTT
AGAAATAGAATTCAAGAGCCATCAAGGAGTGACCAGCTTGACACCACTGCCAAATTCAGAATGA
GGAACCTTGAGAGAAGGAACTGTCGCTCAGCCAGAAGCAGATGAAGCCACTGGTCCTGGTTCAC
AGTTTAGTGTCATGCTCTGGTTTATAAGGATGGGCATTACGTTCGGTGTTATCTGGTTATCTGC
GAGATTCTAAACCGAGGTGCAAGAGCTCCTATCCTGATTCTGAGATTTGAAATAAAGCATGAAT
GAACAAAG

hide sequence

RefSeq Acc Id:

XM_039092361 ⟹ XP_038948289

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,990,285 - 67,094,534 (+)	NCBI

RefSeq Acc Id:

XM_039092362 ⟹ XP_038948290

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,989,545 - 67,094,534 (+)	NCBI

RefSeq Acc Id:

XM_039092363 ⟹ XP_038948291

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,999,307 - 67,094,534 (+)	NCBI

RefSeq Acc Id:

XM_039092364 ⟹ XP_038948292

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,990,286 - 67,094,024 (+)	NCBI

RefSeq Acc Id:

XM_039092365 ⟹ XP_038948293

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,999,307 - 67,094,534 (+)	NCBI

RefSeq Acc Id:

XM_039092366 ⟹ XP_038948294

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,999,307 - 67,094,534 (+)	NCBI

RefSeq Acc Id:

XM_039092367 ⟹ XP_038948295

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	66,999,307 - 67,094,534 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103607	(Get FASTA)	NCBI Sequence Viewer
	NP_068519	(Get FASTA)	NCBI Sequence Viewer
	XP_008768433	(Get FASTA)	NCBI Sequence Viewer
	XP_038948289	(Get FASTA)	NCBI Sequence Viewer
	XP_038948290	(Get FASTA)	NCBI Sequence Viewer
	XP_038948291	(Get FASTA)	NCBI Sequence Viewer
	XP_038948292	(Get FASTA)	NCBI Sequence Viewer
	XP_038948293	(Get FASTA)	NCBI Sequence Viewer
	XP_038948294	(Get FASTA)	NCBI Sequence Viewer
	XP_038948295	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF73049	(Get FASTA)	NCBI Sequence Viewer
	AAI26092	(Get FASTA)	NCBI Sequence Viewer
	AAK82364	(Get FASTA)	NCBI Sequence Viewer
	AAP41835	(Get FASTA)	NCBI Sequence Viewer
	ABI50089	(Get FASTA)	NCBI Sequence Viewer
	ABI50090	(Get FASTA)	NCBI Sequence Viewer
	EDL99943	(Get FASTA)	NCBI Sequence Viewer
	EDL99944	(Get FASTA)	NCBI Sequence Viewer
	EDL99945	(Get FASTA)	NCBI Sequence Viewer
	EDL99946	(Get FASTA)	NCBI Sequence Viewer
	EDL99947	(Get FASTA)	NCBI Sequence Viewer
	EDL99948	(Get FASTA)	NCBI Sequence Viewer
	EDL99949	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_068519 ⟸ NM_021751
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q91XN5 (UniProtKB/TrEMBL), F7FI74 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALVFSVLLLLGLCGKMASGGQPAFDNTPGALNYELPTTEYETQDTFNAGIIDPLYQMVHIFLN VVQPNDFPQDLVKKLIQKRFDISVDTKEVAIYEIGVLICVILGLLFIFLMPLVGFFFCMCRCCN KCGGEMHQRQKQNESCRRKCLAISLLLICLLMSLGIAFGFVANQQTRTRIQRTQKLAESNYRDL RALLTEAPKQIDYILGQYNTTKNKAFSDLDSIDSVLGGRIKGQLKPKVTPVLEEIKAMATAIRQ TKDALQNMSSSLKSLRDASTQLSTNLTSVRNSIENSLNSNDCASDPASKICDSLRPQLSNLGSN HNGSQLPSVDRELNTVNDVDRTDLESLVKRGYMSIDEIPNMIQNQTGDVIKDVKKTLDSVSSKV KNMSQSIPVEEVLLQFSHYLNDSNRYIHESLPRVEEYDSYWWLGGLIVCFLLTLIVTFFYLGLL CGVFGYDKRATPTRRGCVSNTGGIFLMAGVGFSFLFCWILMILVVLTFVVGANVEKLLCEPYEN KKLLQVLDTPYLLNDQWQFYLSGILLKNPDINMTFEQVYRDCKRGRGVYATFQLENVFNITENF NIERLSEDIVKELEKLNVNIDSIELLDKTGRKSLEDFAQSGIDRINYSMYLQEAEKPPTKVDLL TFASFLETEANQLPDGNLKQAFLMDAQNIRAIHQQHVPPVQQSLNSLKQSVWALKQTSSKLPEE VKKVLASLDSAQHFLTSNLSSIVIGETKKFGRTIIGYFEHYLQWVLYAITEKMTSCKPMITAMD SAVNGILCSYVADPLNLFWFGIGKATMLLLPAVIIAIKLAKYYRRMDSEDVYDDVETVPMKNLE NGSNGYHKDHLYGVHNPVMTSPSRY hide sequence

RefSeq Acc Id:	NP_001103607 ⟸ NM_001110137
- Peptide Label:	isoform 2 precursor
- UniProtKB:	A0A0G2K044 (UniProtKB/TrEMBL), Q7TSL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALVFSVLLLLGLCGKMASGGQPAFDNTPGALNYELPTTEYETQDTFNAGIIDPLYQMVHIFLN VVQPNDFPQDLVKKLIQKRFDISVDTKEVAIYEIGVLICVILGLLFIFLMPLVGFFFCMCRCCN KCGGEMHQRQKQNESCRRKCLAISLLLICLLMSLGIAFGFVANQQTRTRIQRTQKLAESNYRDL RALLTEAPKQIDYILGQYNTTKNKAFSDLDSIDSVLGGRIKGQLKPKVTPVLEEIKAMATAIRQ TKDALQNMSSSLKSLRDASTQLSTNLTSVRNSIENSLNSNDCASDPASKICDSLRPQLSNLGSN HNGSQLPSVDRELNTVNDVDRTDLESLVKRGYMSIDEIPNMIQNQTGDVIKDVKKTLDSVSSKV KNMSQSIPVEEVLLQFSHYLNDSNRYIHESLPRVEEYDSYWWLGGLIVCFLLTLIVTFFYLGLL CGVFGYDKRATPTRRGCVSNTGGIFLMAGVGFSFLFCWILMILVVLTFVVGANVEKLLCEPYEN KKLLQVLDTPYLLNDQWQFYLSGILLKNPDINMTFEQVYRDCKRGRGVYATFQLENVFNITENF NIERLSEDIVKELEKLNVNIDSIELLDKTGRKSLEDFAQSGIDRINYSMYLQEAEKPPTKVDLL TFASFLETEANQLPDGNLKQAFLMDAQNIRAIHQQHVPPVQQSLNSLKQSVWALKQTSSKLPEE VKKVLASLDSAQHFLTSNLSSIVIGETKKFGRTIIGYFEHYLQWVLYAITEKMTSCKPMITAMD SAVNGILCSYVADPLNLFWFGIGKATMLLLPAVIIAIKLAKYYRRMDSEDVYDDPSRY hide sequence

RefSeq Acc Id:	XP_008768433 ⟸ XM_008770211
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWD0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALVFSVLLLLGLCGKMASGGQPAFDNTPGALNYELPTTEYETQDTFNAGIIDPLYQMVHIFLN VVQPNDFPQDLVKKLIQKRFDISVDTKEPENIVLALKVAIYEIGVLICVILGLLFIFLMPLVGF FFCMCRCCNKCGGEMHQRQKQNESCRRKCLAISLLLICLLMSLGIAFGFVANQQTRTRIQRTQK LAESNYRDLRALLTEAPKQIDYILGQYNTTKNKAFSDLDSIDSVLGGRIKGQLKPKVTPVLEEI KAMATAIRQTKDALQNMSSSLKSLRDASTQLSTNLTSVRNSIENSLNSNDCASDPASKICDSLR PQLSNLGSNHNGSQLPSVDRELNTVNDVDRTDLESLVKRGYMSIDEIPNMIQNQTGDVIKDVKK TLDSVSSKVKNMSQSIPVEEVLLQFSHYLNDSNRYIHESLPRVEEYDSYWWLGGLIVCFLLTLI VTFFYLGLLCGVFGYDKRATPTRRGCVSNTGGIFLMAGVGFSFLFCWILMILVVLTFVVGANVE KLLCEPYENKKLLQVLDTPYLLNDQWQFYLSGILLKNPDINMTFEQVYRDCKRGRGVYATFQLE NVFNITENFNIERLSEDIVKELEKLNVNIDSIELLDKTGRKSLEDFAQSGIDRINYSMYLQEAE KPPTKVDLLTFASFLETEANQLPDGNLKQAFLMDAQNIRAIHQQHVPPVQQSLNSLKQSVWALK QTSSKLPEEVKKVLASLDSAQHFLTSNLSSIVIGETKKFGRTIIGYFEHYLQWVLYAITEKMTS CKPMITAMDSAVNGILCSYVADPLNLFWFGIGKATMLLLPAVIIAIKLAKYYRRMDSEDVYDDV ETVPMKNLENGSNGYHKDHLYGVHNPVMTSPSRY hide sequence

RefSeq Acc Id:

ENSRNOP00000004231 ⟸ ENSRNOT00000004231

RefSeq Acc Id:

ENSRNOP00000071297 ⟸ ENSRNOT00000082592

RefSeq Acc Id:

ENSRNOP00000069832 ⟸ ENSRNOT00000083701

RefSeq Acc Id:

ENSRNOP00000071743 ⟸ ENSRNOT00000084274

RefSeq Acc Id:

ENSRNOP00000068615 ⟸ ENSRNOT00000084322

RefSeq Acc Id:	XP_038948290 ⟸ XM_039092362
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWD0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948289 ⟸ XM_039092361
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JWD0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948292 ⟸ XM_039092364
- Peptide Label:	isoform X3
- UniProtKB:	F7FI74 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948294 ⟸ XM_039092366
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038948291 ⟸ XM_039092363
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038948295 ⟸ XM_039092367
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038948293 ⟸ XM_039092365
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSRNOP00000080859 ⟸ ENSRNOT00000113497

RefSeq Acc Id:

ENSRNOP00000097023 ⟸ ENSRNOT00000118243

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JWD0-F1-model_v2	AlphaFold	A0A0G2JWD0	1-866	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699352

Promoter ID:

EPDNEW_R9876

Type:

initiation region

Name:

Prom1_1

Description:

prominin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	71,533,067 - 71,533,127	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69367	AgrOrtholog
BioCyc Gene	G2FUF-15516	BioCyc
Ensembl Genes	ENSRNOG00000003098	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000004231	ENTREZGENE
	ENSRNOP00000004231.7	UniProtKB/TrEMBL
	ENSRNOP00000068615	ENTREZGENE
	ENSRNOP00000068615.2	UniProtKB/TrEMBL
	ENSRNOP00000069832	ENTREZGENE
	ENSRNOP00000069832.1	UniProtKB/TrEMBL
	ENSRNOP00000071297	ENTREZGENE
	ENSRNOP00000071297.2	UniProtKB/TrEMBL
	ENSRNOP00000071743.1	UniProtKB/TrEMBL
	ENSRNOP00000080859.1	UniProtKB/TrEMBL
	ENSRNOP00000097023.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004231	ENTREZGENE
	ENSRNOT00000004231.7	UniProtKB/TrEMBL
	ENSRNOT00000082592	ENTREZGENE
	ENSRNOT00000082592.2	UniProtKB/TrEMBL
	ENSRNOT00000083701	ENTREZGENE
	ENSRNOT00000083701.2	UniProtKB/TrEMBL
	ENSRNOT00000084274.2	UniProtKB/TrEMBL
	ENSRNOT00000084322	ENTREZGENE
	ENSRNOT00000084322.2	UniProtKB/TrEMBL
	ENSRNOT00000113497.1	UniProtKB/TrEMBL
	ENSRNOT00000118243.1	UniProtKB/TrEMBL
InterPro	Prominin	UniProtKB/TrEMBL
KEGG Report	rno:60357	UniProtKB/TrEMBL
NCBI Gene	60357	ENTREZGENE
PANTHER	Prominin	UniProtKB/TrEMBL
	PROMININ-1	UniProtKB/TrEMBL
Pfam	Prominin	UniProtKB/TrEMBL
PhenoGen	Prom1	PhenoGen
UniProt	A0A0G2JT89_RAT	UniProtKB/TrEMBL
	A0A0G2JWD0	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K044	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQT1_RAT	UniProtKB/TrEMBL
	A0A8I6GLV7_RAT	UniProtKB/TrEMBL
	A0JN22_RAT	UniProtKB/TrEMBL
	F7FI74	ENTREZGENE
	Q09LS9_RAT	UniProtKB/TrEMBL
	Q09LT0_RAT	UniProtKB/TrEMBL
	Q7TSL4	ENTREZGENE, UniProtKB/TrEMBL
	Q91XN5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F7FI74	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Prom1	prominin 1	Prom	prominin	Symbol and Name updated	1299863	APPROVED
2002-06-10	Prom	prominin			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains four transmembrane segments and two extracellular glycosylated domains	68837

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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