Ildr1 (immunoglobulin-like domain containing receptor 1)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Ildr1 (immunoglobulin-like domain containing receptor 1) Rattus norvegicus

Analyze

Symbol:

Ildr1

Name:

immunoglobulin-like domain containing receptor 1

RGD ID:

1307792

Description:

Predicted to enable high-density lipoprotein particle receptor activity and identical protein binding activity. Predicted to be involved in several processes, including epithelial structure maintenance; protein localization to tricellular tight junction; and tricellular tight junction assembly. Predicted to act upstream of or within cellular response to leukemia inhibitory factor; endocytosis; and positive regulation of peptide hormone secretion. Predicted to be located in cytosol and tricellular tight junction. Predicted to be part of protein-containing complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1); INTERACTS WITH 3-chloropropane-1,2-diol; acetamide; bis(2-ethylhexyl) phthalate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

immunoglobulin-like domain-containing receptor 1; LOC303914; RGD1307792; similar to expressed sequence AU041483

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	64,085,774 - 64,118,760 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	64,008,566 - 64,118,760 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	72,898,161 - 72,931,152 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	11	65,560,389 - 65,593,384 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	11	64,591,461 - 64,624,929 (-)	NCBI	Rnor_WKY
Rnor_6.0	11	67,004,042 - 67,037,115 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	67,004,042 - 67,037,115 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	70,094,403 - 70,146,149 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	65,892,821 - 65,926,521 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	65,954,712 - 65,972,413 (-)	NCBI
Celera	11	63,557,456 - 63,590,632 (-)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

autosomal recessive nonsyndromic deafness (ISO)

autosomal recessive nonsyndromic deafness 42 (ISO)

Deafness (ISO)

familial hypocalciuric hypercalcemia (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

sensorineural hearing loss (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

calcitriol (ISO)

choline (ISO)

dexamethasone (ISO)

diuron (EXP)

ethanol (EXP)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

indometacin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

paraoxon (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to leukemia inhibitory factor (ISO)

epithelial structure maintenance (ISO)

establishment of localization in cell (ISO)

peptide hormone secretion (ISO)

positive regulation of peptide hormone secretion (ISO)

protein localization to tricellular tight junction (ISO)

regulation of RNA splicing (ISO)

response to fatty acid (ISO)

tricellular tight junction assembly (ISO)

Cellular Component

bicellular tight junction (IEA)

cytosol (ISO)

plasma membrane (IBA,ISO)

plasma membrane (ISO)

protein-containing complex (ISO)

tight junction (ISO)

tricellular tight junction (ISO)

Molecular Function

high-density lipoprotein particle receptor activity (IBA,ISO)

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15381095	PMID:20439489	PMID:23863714	PMID:25822906

Genomics

Comparative Map Data

Ildr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	64,085,774 - 64,118,760 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	64,008,566 - 64,118,760 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	72,898,161 - 72,931,152 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	11	65,560,389 - 65,593,384 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	11	64,591,461 - 64,624,929 (-)	NCBI	Rnor_WKY
Rnor_6.0	11	67,004,042 - 67,037,115 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	67,004,042 - 67,037,115 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	70,094,403 - 70,146,149 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	65,892,821 - 65,926,521 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	65,954,712 - 65,972,413 (-)	NCBI
Celera	11	63,557,456 - 63,590,632 (-)	NCBI		Celera
Cytogenetic Map	11	q22	NCBI

ILDR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	121,987,323 - 122,061,655 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	121,987,323 - 122,022,247 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	121,706,170 - 121,741,094 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	123,188,860 - 123,223,720 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	123,188,860 - 123,223,720	NCBI
Celera	3	120,115,851 - 120,150,704 (-)	NCBI		Celera
Cytogenetic Map	3	q13.33	NCBI
HuRef	3	119,079,962 - 119,114,926 (-)	NCBI		HuRef
CHM1_1	3	121,670,195 - 121,705,150 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	124,707,284 - 124,742,239 (-)	NCBI		T2T-CHM13v2.0

Ildr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	36,514,340 - 36,547,166 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	36,514,340 - 36,547,166 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	36,693,978 - 36,726,804 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	36,693,978 - 36,726,804 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	36,694,124 - 36,726,827 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	36,613,277 - 36,645,980 (+)	NCBI		MGSCv36	mm8
Celera	16	37,109,951 - 37,142,691 (+)	NCBI		Celera
Cytogenetic Map	16	B3	NCBI

Ildr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	21,304,890 - 21,322,261 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	21,304,460 - 21,333,170 (-)	NCBI	ChiLan1.0	ChiLan1.0

ILDR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	125,996,018 - 126,032,041 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	125,996,018 - 126,032,041 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	119,088,855 - 119,124,831 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ILDR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	25,207,537 - 25,238,071 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	25,207,572 - 25,237,949 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	25,232,807 - 25,263,335 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	25,442,863 - 25,473,603 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	25,442,898 - 25,473,484 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	25,241,193 - 25,271,698 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	25,283,526 - 25,314,260 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	25,841,471 - 25,872,032 (-)	NCBI		UU_Cfam_GSD_1.0

Ildr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	129,138,080 - 129,173,194 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936536	8,351,359 - 8,383,907 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936536	8,351,394 - 8,383,857 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ILDR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	138,530,910 - 138,572,189 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	138,530,905 - 138,575,483 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	148,157,411 - 148,199,507 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ILDR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	58,833,754 - 58,870,547 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	58,834,293 - 58,870,303 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	107,477,774 - 107,512,183 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ildr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624912	267,185 - 300,550 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624912	269,657 - 300,537 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ildr1
212 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	104
Count of miRNA genes:	86
Interacting mature miRNAs:	98
Transcripts:	ENSRNOT00000003137
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	22959403	67959403	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	23280456	68280456	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	23280456	68280456	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	23280456	68280456	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	27672410	82846715	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	29528418	82566702	Rat
2298551	Neuinf10	Neuroinflammation QTL 10	3.7		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	11	31239134	78851519	Rat
70180	BpQTLcluster10	Blood pressure QTL cluster 10	3.19		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	11	34918041	79918041	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	40946188	82566702	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	44285759	82566702	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	44803318	82846466	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	44803318	82846466	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	45459323	75190161	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	54457534	86241447	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	55136729	82993457	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	56351424	86241447	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	59802794	82566545	Rat
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	59802794	82566553	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	60346590	86241447	Rat

Markers in Region

BM383434

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	64,085,795 - 64,085,983 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	67,004,064 - 67,004,251	NCBI	Rnor6.0
Rnor_5.0	11	70,094,431 - 70,094,618	UniSTS	Rnor5.0
RGSC_v3.4	11	65,892,843 - 65,893,030	UniSTS	RGSC3.4
Celera	11	63,557,478 - 63,557,665	UniSTS
RH 3.4 Map	11	466.5	UniSTS
Cytogenetic Map	11	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	nervous system	renal system	reproductive system	respiratory system
High
Medium	3							27	1
Low		2	15	6	19	6	12	8	30	11
Below cutoff		3	42	35		35	54		9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000003137 ⟹ ENSRNOP00000003137

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	64,085,774 - 64,118,760 (-)	Ensembl
Rnor_6.0 Ensembl	11	67,004,042 - 67,037,115 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101640 ⟹ ENSRNOP00000089659

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	64,008,566 - 64,118,760 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115040 ⟹ ENSRNOP00000084898

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	64,085,774 - 64,118,760 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119026 ⟹ ENSRNOP00000092266

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	64,062,507 - 64,118,760 (-)	Ensembl

RefSeq Acc Id:

NM_001127536 ⟹ NP_001121008

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	64,085,774 - 64,118,760 (-)	NCBI
Rnor_6.0	11	67,004,042 - 67,037,115 (-)	NCBI
Rnor_5.0	11	70,094,403 - 70,146,149 (-)	NCBI
RGSC_v3.4	11	65,892,821 - 65,926,521 (-)	RGD
Celera	11	63,557,456 - 63,590,632 (-)	RGD

Sequence:

show sequence

CGGAGATGCGTGTCCCCAGCTGGCGTCAGATGAGGAAATACGCGGCTCCCCGGGGCCCTTGAGC
CTCTGTAGCCAGAATGGGGGCCAGCATGGGCTGCGGGCTGCTAGTTGCTGGCCTGCTCCTTTTC
ACCTGGCTCCCAGCAGGGTGTCTGTCCTTGCTGGTCACAGTTCAGCACACCGAACGCTATGTCA
CTCTGTTTGCCTCTGTCACCCTCAAATGTGACTACACCACCTCTGCTCAGCTCCAGGATGTGGT
TGTGACATGGCGCTTCAAGTCCTTCTGCAAGGACCCCATCTTTGACTACTTCTCTGCCTCATAC
CAGGCCGCTTTGTCCCTGGGCCAGGACCCCTCCAATGACTGTAGTGACAATCAGAGGGAAGTTC
GCATCGTGGCCCAGCGGCGCGGGCAGAGTGAGCCAGTGCTGGGGGTGGATTACCGGCAGCGCAA
GATCACCATCCAGAACCGAGCAGATCTTGTGATTAATGAAGTGATGTGGTGGGATCATGGGGTA
TACTATTGCACCATCGAGGCTCCAGGAGACACATCGGGAGACCCAGATAAGGAGGTGAAGCTCA
TCGTGCTGCATTGGCTGACAGTGATCTTCATCATCCTTGGAGCCCTCCTTCTCCTGCTGCTGAT
TGGTGTGTGCTGGTGCCAGTGTTGTCCGCAGTATTGCTGCTGCTACATCCGCTGCCCCTGCTGT
CCCACCCACTGTTGCTGTCCCGAGGAAGCCCTGGCCCGCCACCGCTACATGAAGCAGGTACAGG
CCCTAGGTCCTCAGATGATGGAAAAACCCCTGTACTGGGGGGCGGACAGGAGCTCCCAAGTTTC
ATCTTATGCAATGAACCCGCTGCTGCAGCGAGATCTGTCCTTACGGTCCAGCCTTCCACAGATG
CCAATGACCCAGATGGCCGCTCACCCTCCCGTGGCCAATGGCGTCTTGGAATATTTGGAGAAAG
AATTGCGGAACCTCAACCCAGCCCAGCCTCTGCCTCCGGATCTCAGAACCAAATCTGGTCACCC
TTGCAGCATGCTCTCTTCCCTGGGCTCCGCCGAGGTTGTGGAACGCAGAGTCATCCACCTGCCC
CCACTGATCAGAGACCCACTGCCCTCCAGGACCAGCAACTCCTCACACCAGCAGCGGCTCAATC
CTGTTCCTTCCAGACCCCGGGATCCGAGTGAGGGCCGGAGGCAGCGCAATCACTCGGATTTCCT
CCGAGAACTCCAGGACCGGGGGATGAGACCCTGGGCCCCCGGGAGAGGGGAGCTGGACCCCCAT
TGGAGTGGGAGACACCACCGCTCTAGGCCTAGCGAGTCCTCCATGCCCTGGTCAGACTGGGACA
GCCTGAGCGAATGTCCCTCGTCCAGTGAGGCTCCTTGGCCCTCCAGACGACCAGAGCCCCGGGA
AGGATCCCAGAGACATGGGAGACGCAGGCATCGCAGCTACTCACCTCCCCTACCCTCGGGCCCC
AGTTCTTGGAGCTCTGAAGAGGAGAAAGAGTCGCTGCCTAGGAACTGGGGTGCCCAGCGACGTC
ACCATCGCCGCAGCCGCCGCCGCTCACAGTCTCCAAACTGGCTGGAGGAGAAACCACCCAGCTA
CCGCTCACTGGATGTGACTCCAGGCAAGAACAACATGAAAAAGGGGAATGTGGAGAGGCGCTTG
GAGAGGGAGAGCTCCCATAGCGGACGGAGCGTGGTCATTTAGTCTCCAGGCCTCATACTGCTTC
TTGGATCGCACGTGTCAGCATCACCAACATTTCTGGCTGCCTCGGGAGGGACACCATACATCTG
TGTCTCACAGTTTGGGTGTAGATTCTAAGAATCAGATAGAAGAGTTTTCAAAACAGGTGTTTGT
GGGATTAATACCAAGCTTTATTTATCCCTTTTCACACCCTCTGTCTATTACATGGTCTCCGACT
TGTAAGGGATCCTAGCTAGGATAGGATCCCTCAGAAACACAGCAACCCAGAGTGTTCCAGTAGG
TCAAGGTGCTCCGGACCAAGGCATTCTCATAACTACAACTCAGGAATCTTTAAGAGGAAATCAA
ACGTGTTCCAGGAACAGGAAACCTATGGAATATTATGAGCAAGTGCCCGTGGGAACTCCCTGCC
CTCTCTGGAACTTCTTGAGGGATTTTCCACAATAAGCATCCCCACCTGTGGTCCTGAGCATTCC
TGAGTTCCCAACCCAAGCAAGAGAGCAAGTGTGAAACTTCTATATCTCTGTGCCTTTCACAGAC
TGTTTAATGCAACTCTGGGAAACCACAGGGAACCAATTGTTCACCAACCGAGCGTGTTCTCATT
TCTTTTTTTCTTTCTTCTTGTTCCTTTCCCCTATATTTAATTGGTTTTCTTCCATATGATACTA
TAATAATGCTAAAATCACCTTAAGTACTTTCAAGCACCATACAGTATAAACAAGAAAATTAATG
TAACGGGCTGAAGATTCCATTTCAAATAAATATCTGCTTTTCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001121008	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66709	(Get FASTA)	NCBI Sequence Viewer
	EDM11273	(Get FASTA)	NCBI Sequence Viewer
	EDM11274	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001121008 ⟸ NM_001127536
- Peptide Label:	precursor
- UniProtKB:	E9PSR6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGASMGCGLLVAGLLLFTWLPAGCLSLLVTVQHTERYVTLFASVTLKCDYTTSAQLQDVVVTWR FKSFCKDPIFDYFSASYQAALSLGQDPSNDCSDNQREVRIVAQRRGQSEPVLGVDYRQRKITIQ NRADLVINEVMWWDHGVYYCTIEAPGDTSGDPDKEVKLIVLHWLTVIFIILGALLLLLLIGVCW CQCCPQYCCCYIRCPCCPTHCCCPEEALARHRYMKQVQALGPQMMEKPLYWGADRSSQVSSYAM NPLLQRDLSLRSSLPQMPMTQMAAHPPVANGVLEYLEKELRNLNPAQPLPPDLRTKSGHPCSML SSLGSAEVVERRVIHLPPLIRDPLPSRTSNSSHQQRLNPVPSRPRDPSEGRRQRNHSDFLRELQ DRGMRPWAPGRGELDPHWSGRHHRSRPSESSMPWSDWDSLSECPSSSEAPWPSRRPEPREGSQR HGRRRHRSYSPPLPSGPSSWSSEEEKESLPRNWGAQRRHHRRSRRRSQSPNWLEEKPPSYRSLD VTPGKNNMKKGNVERRLERESSHSGRSVVI hide sequence

RefSeq Acc Id:

ENSRNOP00000003137 ⟸ ENSRNOT00000003137

RefSeq Acc Id:

ENSRNOP00000084898 ⟸ ENSRNOT00000115040

RefSeq Acc Id:

ENSRNOP00000089659 ⟸ ENSRNOT00000101640

RefSeq Acc Id:

ENSRNOP00000092266 ⟸ ENSRNOT00000119026

Protein Domains

Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PSR6-F1-model_v2	AlphaFold	E9PSR6	1-542	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698181

Promoter ID:

EPDNEW_R8705

Type:

single initiation site

Name:

Ildr1_1

Description:

immunoglobulin-like domain containing receptor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	67,037,131 - 67,037,191	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307792	AgrOrtholog
BioCyc Gene	G2FUF-21238	BioCyc
Ensembl Genes	ENSRNOG00000002289	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000003137	ENTREZGENE
	ENSRNOP00000003137.5	UniProtKB/TrEMBL
	ENSRNOP00000084898.1	UniProtKB/TrEMBL
	ENSRNOP00000089659.1	UniProtKB/TrEMBL
	ENSRNOP00000092266.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003137	ENTREZGENE
	ENSRNOT00000003137.6	UniProtKB/TrEMBL
	ENSRNOT00000101640.1	UniProtKB/TrEMBL
	ENSRNOT00000115040.1	UniProtKB/TrEMBL
	ENSRNOT00000119026.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7929589	IMAGE-MGC_LOAD
InterPro	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	LISCH7	UniProtKB/TrEMBL
KEGG Report	rno:303914	UniProtKB/TrEMBL
MGC_CLONE	MGC:188405	IMAGE-MGC_LOAD
NCBI Gene	303914	ENTREZGENE
PANTHER	IMMUNOGLOBULIN-LIKE DOMAIN-CONTAINING RECEPTOR 1	UniProtKB/TrEMBL
	TRANSMEMBRANE AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	LSR	UniProtKB/TrEMBL
PhenoGen	Ildr1	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8I6A2V2_RAT	UniProtKB/TrEMBL
	A0A8I6GIA2_RAT	UniProtKB/TrEMBL
	A0A8I6GK38_RAT	UniProtKB/TrEMBL
	B2RYA7_RAT	UniProtKB/TrEMBL
	E9PSR6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Ildr1	immunoglobulin-like domain containing receptor 1	RGD1307792_predicted	similar to expressed sequence AU041483 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307792_predicted	similar to expressed sequence AU041483 (predicted)	LOC303914_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC303914_predicted	similar to expressed sequence AU041483 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM