Cytl1 (cytokine like 1) - Rat Genome Database

Name: Cytl1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cytl1 (cytokine like 1) Rattus norvegicus

Analyze

Symbol:

Cytl1

Name:

cytokine like 1

RGD ID:

1561846

Description:

Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including cartilage homeostasis; chondrocyte differentiation; and chondroitin sulfate proteoglycan biosynthetic process. Orthologous to human CYTL1 (cytokine like 1); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cytokine-like protein 1; LOC498392; RGD1561846; similar to Cytokine-like protein C17 precursor (UNQ1942/PRO4425)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CYTL1 (cytokine like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cytl1 (cytokine-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cytl1 (cytokine like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CYTL1 (cytokine like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CYTL1 (cytokine like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cytl1 (cytokine like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CYTL1 (cytokine like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CYTL1 (cytokine like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cytl1 (cytokine like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CYTL1 (cytokine like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cytl1 (cytokine-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zmp:0000001268	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cytl1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	73,053,876 - 73,058,886 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	73,053,877 - 73,058,886 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	77,508,028 - 77,513,034 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	78,748,888 - 78,753,890 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	75,189,427 - 75,194,462 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	77,805,137 - 77,810,147 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	77,805,130 - 77,810,147 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	77,783,865 - 77,788,875 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	78,349,878 - 78,354,888 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	72,016,197 - 72,021,228 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ellis-Van Creveld syndrome (ISO)

genetic disease (ISO)

tooth and nail syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

carbamazepine (ISO)

carbon nanotube (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

diuron (EXP)

dorsomorphin (ISO)

folic acid (ISO)

fonofos (ISO)

furan (EXP)

hydrogen peroxide (ISO)

nickel atom (ISO)

ozone (EXP,ISO)

paraquat (EXP)

parathion (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

reactive oxygen species (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

T-2 toxin (ISO)

terbufos (ISO)

titanium dioxide (EXP,ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cartilage homeostasis (ISO)

chondrocyte differentiation (ISO)

chondroitin sulfate proteoglycan biosynthetic process (ISO)

inner ear development (ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

transcription by RNA polymerase II (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17644814	PMID:21652695	PMID:21795542

Genomics

Comparative Map Data

Cytl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	73,053,876 - 73,058,886 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	73,053,877 - 73,058,886 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	77,508,028 - 77,513,034 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	78,748,888 - 78,753,890 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	75,189,427 - 75,194,462 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	77,805,137 - 77,810,147 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	77,805,130 - 77,810,147 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	77,783,865 - 77,788,875 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	78,349,878 - 78,354,888 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	72,016,197 - 72,021,228 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

CYTL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	5,014,586 - 5,019,458 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	5,014,586 - 5,019,458 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	5,016,313 - 5,021,185 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	5,067,214 - 5,072,098 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	5,134,387 - 5,139,269	NCBI
Celera	4	4,913,525 - 4,918,414 (-)	NCBI		Celera
Cytogenetic Map	4	p16.2	NCBI
HuRef	4	4,952,728 - 4,957,617 (-)	NCBI		HuRef
CHM1_1	4	5,014,307 - 5,019,195 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	4,984,228 - 4,989,105 (-)	NCBI		T2T-CHM13v2.0

Cytl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	37,892,863 - 37,897,164 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	37,892,863 - 37,897,164 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	37,735,519 - 37,739,820 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	37,735,519 - 37,739,820 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	38,126,758 - 38,131,059 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	38,023,768 - 38,028,069 (+)	NCBI		MGSCv36	mm8
Celera	5	35,191,397 - 35,195,691 (+)	NCBI		Celera
Cytogenetic Map	5	B3	NCBI
cM Map	5	20.21	NCBI

Cytl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	4,826,755 - 4,831,951 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	4,826,792 - 4,831,424 (+)	NCBI	ChiLan1.0	ChiLan1.0

CYTL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	4	5,214,116 - 5,219,213 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	4	5,092,567 - 5,097,456 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	5,092,144 - 5,098,092 (-)	Ensembl	panpan1.1		panPan2

CYTL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	70,354,099 - 70,358,521 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	70,354,090 - 70,359,128 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	72,904,811 - 72,909,240 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	71,113,282 - 71,117,712 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	71,113,283 - 71,117,907 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	70,384,321 - 70,388,747 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	70,544,734 - 70,549,165 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	70,929,545 - 70,933,976 (-)	NCBI		UU_Cfam_GSD_1.0

Cytl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	63,807,132 - 63,813,091 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	17,508,823 - 17,512,663 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936477	17,508,833 - 17,512,608 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CYTL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	5,455,671 - 5,460,861 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	5,455,576 - 5,460,861 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	5,266,914 - 5,272,133 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CYTL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	41,187,925 - 41,192,768 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	41,187,828 - 41,192,690 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	87,982,211 - 87,987,014 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cytl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	21,968,570 - 21,973,397 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	21,968,360 - 21,972,986 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cytl1
28 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	429
Count of miRNA genes:	215
Interacting mature miRNAs:	261
Transcripts:	ENSRNOT00000035427
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat

Markers in Region

RH137253

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	73,053,935 - 73,054,116 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	77,805,197 - 77,805,377	NCBI	Rnor6.0
Rnor_5.0	14	77,783,925 - 77,784,105	UniSTS	Rnor5.0
RGSC_v3.4	14	78,349,938 - 78,350,118	UniSTS	RGSC3.4
Celera	14	72,016,257 - 72,016,437	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH139823

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	73,054,865 - 73,055,050 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	77,806,127 - 77,806,311	NCBI	Rnor6.0
Rnor_5.0	14	77,784,855 - 77,785,039	UniSTS	Rnor5.0
RGSC_v3.4	14	78,350,868 - 78,351,052	UniSTS	RGSC3.4
Celera	14	72,017,187 - 72,017,371	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		10	2		2		3	4			9	11	3
Low	3	25	15	1	16	1	5	7	51	31	27		5
Below cutoff		6	22	22	1	22			21	2	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC169053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000035427 ⟹ ENSRNOP00000030763

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	73,053,877 - 73,058,886 (-)	Ensembl
Rnor_6.0 Ensembl	14	77,805,130 - 77,810,147 (-)	Ensembl

RefSeq Acc Id:

NM_001134604 ⟹ NP_001128076

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	73,053,876 - 73,058,886 (-)	NCBI
Rnor_6.0	14	77,805,137 - 77,810,147 (-)	NCBI
Rnor_5.0	14	77,783,865 - 77,788,875 (-)	NCBI
RGSC_v3.4	14	78,349,878 - 78,354,888 (-)	RGD
Celera	14	72,016,197 - 72,021,228 (-)	RGD

Sequence:

show sequence

GGCACTATGGCACCAAAGACACTGCCTCTGTTGCTGTCGCTGCTGCTGGTGGTCTGGCCTCTGA
CAGTACAGCCTGCGCCCCCCACTTGCTACTCCCGGATGCTGACCCTGAGCCGTGAGATCATGGC
AGACTTCCAGAGCCTGCAGGCTTCAGAGCCTGAGGACTCATGTGTGAGGTACTTGCCCCGGCTT
TACCTGGATATCCATAATTACTGTGTGCTGACCAAGCTTCGAGACTTCGTGGCCTCTCCTCAGT
GCTGGAAAATGGCCGAAGTAGATATGCTGAAGGACAGAGTGCGGAAGCTATATACCATCATGAA
CTCCTTCTGCAGGCGGGACTTGGTGTTTCTCTCAGATGACTGCAGTGTCTTAGAACACCCAATC
CCCGAGACGACGGATCCTCCAGACTGGCAGAGCTAAGACAACAGGACCAGGACAACTCAGAGCC
CTGAAGCTGGGTCCCCCAGGTCTCCTTTTAGTGCAGCTGTTAGACCTGCCATATGTCTTTCTAC
CTTCTGAAAGACCAGTGAGGATCCTGCCTCTGAGCATGCTTTGTGCACAGGTGGGAGCCTCAAC
TCCTACGTGTCTCATTGGAGTATAAGAGGTACAAACAGGAAAGTGTACATTGGTTTCTCTTGGG
GGAGCAAGCACGTGGGAACAGCAAAACCCCATGCCTTTGTGACTGCTTTAATGAAACAATGGGA
CCATTCTTCTTGCTTCTGCTTACACCCAAGGGGGCTTCAACCTTTTTCCTCCTGCCTGCACAAG
CTTTCCTTCCTTTCTCTCATTTTAAAGTGTTTTTACTGCTTTCGCGATGTATTTACAAGGTTTT
TATGTAGTGTGAACGAGCCACCCTTTCACTGAAGGGTGATGAAAACCAAATAAACCTCCATTGT
GAGAAGCAGGGTGCTGCTGTGTTGCCCCACAGTGGCCTTACACAGGTTTTTCTCCACTTTCCCT
CAGAGCACCTGCTAATCCCATGATGCAATCGTTGATTCTTCTCCATCAAACCCGTGTCTCAGTC
CTTTTCACCCCACCTGTATAAATGGCTGTACCTAAGGGGTTGGGAGACGCTCTAGCTTCTGCTA
GGGACACAGTGGCCCTTTGACTGTAACCATTGGGAACAGATTGCACTGTTGGGGGGTGGGCAGT
ACCCTGTCACAAATGCCCCAGTCACGAGGCTCAGCTCTTACATACCTGGGATGGACACTGAAGG
AAACTAATGGTGAACTGAGTGACTTGACTCGATCAAGGTCACCAATTGTTGAGGGGGTTGGGGG
TTCTCAGAGGACTCCAGGTTTCAAAAGGACCTGCAGCAGGCCTAGAGCTGGTGAGCTACAGAGG
GCCGAAGGCAGGCACGAGGCTCCGACATGAGCGTGGCTAGAGCTGAAAACACGGTGGAATTGAG
CTATGAACAACACAAGTGACGGTCAGGCCCATCCAGGCAGAACCTTCTGTCCCCAAACCATCTG
CAGGGTCACAGAAAGGAGAACCCCACCCCCTCCTAGCAGAAAACTTGGGACCTGTCAGTTAAAA
CTAAGGTTTTCAAGTCCTTAGGGGTCCCCGCTTTGGACCTCAAAACTAAGAAATGGGATGTTGC
TTTTTGGGTCCCAGTCCATCACCAAGCCAGGGGTGAGCACAGCCCTGACCGAGGCACCGTCCTC
CAGAGTGAACTGGTCACATGTCTCTCCACATCTGCTAAAGTCTCCATCTGCTCCCTCCCAACCT
TGGCGTTAACTGGATACACCGGATGTACATTCCATCCAAACTGGGTCCGACATTCAGTTTTCTC
ACTGGCTTCTCTCTGCTGTTAACTTTTTGTCCTAAATAAAAATGTCAATCAAGCAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001128076	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69053	(Get FASTA)	NCBI Sequence Viewer
	EDM00022	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001128076 ⟸ NM_001134604
- Peptide Label:	precursor
- UniProtKB:	B5DFG7 (UniProtKB/TrEMBL), A6IJV8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPKTLPLLLSLLLVVWPLTVQPAPPTCYSRMLTLSREIMADFQSLQASEPEDSCVRYLPRLYL DIHNYCVLTKLRDFVASPQCWKMAEVDMLKDRVRKLYTIMNSFCRRDLVFLSDDCSVLEHPIPE TTDPPDWQS hide sequence

RefSeq Acc Id:

ENSRNOP00000030763 ⟸ ENSRNOT00000035427

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DFG7-F1-model_v2	AlphaFold	B5DFG7	1-137	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561846	AgrOrtholog
BioCyc Gene	G2FUF-15365	BioCyc
Ensembl Genes	ENSRNOG00000028108	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000030763	ENTREZGENE
	ENSRNOP00000030763.4	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035427	ENTREZGENE
	ENSRNOT00000035427.6	UniProtKB/TrEMBL
InterPro	CYTL1	UniProtKB/TrEMBL
KEGG Report	rno:498392	UniProtKB/TrEMBL
NCBI Gene	498392	ENTREZGENE
PANTHER	CYTOKINE-LIKE PROTEIN 1	UniProtKB/TrEMBL
	PTHR15974	UniProtKB/TrEMBL
Pfam	CYTL1	UniProtKB/TrEMBL
PhenoGen	Cytl1	PhenoGen
UniProt	A6IJV8	ENTREZGENE, UniProtKB/TrEMBL
	B5DFG7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Cytl1	cytokine like 1	RGD1561846_predicted	similar to Cytokine-like protein C17 precursor (UNQ1942/PRO4425) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561846_predicted	similar to Cytokine-like protein C17 precursor (UNQ1942/PRO4425) (predicted)	LOC498392	similar to Cytokine-like protein C17 precursor (UNQ1942/PRO4425)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498392	similar to Cytokine-like protein C17 precursor (UNQ1942/PRO4425)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar