Imported Annotations - ClinVar | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AGAT deficiency | ISO | RGD:732572 | 8554872 | ClinVar Annotator: match by term: Arginine:glycine amidinotransferase deficiency | ClinVar | PMID:28492532 |



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Imported Annotations - ClinVar | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AGAT deficiency | ISO | RGD:732572 | 8554872 | ClinVar Annotator: match by term: Arginine:glycine amidinotransferase deficiency | ClinVar | PMID:28492532 |
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1. | Anderson CM, etal., Brain Res Mol Brain Res 1996 Dec;42(2):358-61. |
2. | Che M, etal., J Biol Chem 1995 Jun 9;270(23):13596-9. |
3. | Fernandez-Veledo S, etal., Biochem J. 2006 Apr 15;395(2):337-44. |
4. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
5. | GOA data from the GO Consortium |
6. | Larrayoz IM, etal., Am J Physiol Cell Physiol. 2006 Dec;291(6):C1395-404. Epub 2006 Jul 12. |
7. | Li JY, etal., J Cereb Blood Flow Metab 2001 Aug;21(8):929-36. |
8. | MGD data from the GO Consortium |
9. | Mori N, etal., Eur J Pharmacol. 2010 Feb 25;628(1-3):214-9. Epub 2009 Dec 2. |
10. | Nagase K, etal., Biochim Biophys Acta. 2006 Jan;1758(1):13-9. Epub 2006 Feb 2. |
11. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
12. | Pipeline to import SMPDB annotations from SMPDB into RGD |
13. | RGD automated data pipeline |
14. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
15. | RGD automated import pipeline for gene-chemical interactions |
16. | Rodriguez-Mulero S, etal., Kidney Int. 2005 Aug;68(2):665-72. |
17. | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
18. | Yao SY, etal., Mol Pharmacol 1996 Dec;50(6):1529-35. |
PubMed | 1315767 10721696 15024061 15287894 16840788 17013559 20421393 22136384 22354287 23819782 25315414 28322028 |
Slc28a2 (Rattus norvegicus - Norway rat) |
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SLC28A2 (Homo sapiens - human) |
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Slc28a2 (Mus musculus - house mouse) |
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Slc28a2 (Chinchilla lanigera - long-tailed chinchilla) |
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SLC28A2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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Slc28a2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SLC28A2 (Sus scrofa - pig) |
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RH127610 |
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RH131217 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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High | ||||||||||||||||
Medium | 10 | 1 | 2 | 2 | 6 | 21 | 4 | 10 | 15 | 2 | 8 | |||||
Low | 20 | 33 | 23 | 14 | 2 | 3 | 1 | 8 | 20 | 4 | 7 | 1 | 26 | 35 | 6 | |
Below cutoff | 2 |
RefSeq Transcripts | NM_031664 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AABR07053553 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AABR07053554 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053555 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053556 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053557 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053558 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053559 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053560 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053561 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053562 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053563 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053564 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053565 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053566 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053567 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053568 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053569 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053570 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053571 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053572 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053573 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053574 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07053576 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AABR07072919 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01024730 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01024731 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AAHX01024732 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AB485922 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY029302 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
EU032627 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U25055 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U66723 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U67084 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | NM_031664 ⟹ NP_113852 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
CCACGCGTCCGGTCTTGCTGAAGGGAAACCTCCACTTCCTGCTTGTGAGAGTATTAATCCCTGChide sequence |
Protein RefSeqs | NP_113852 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAA80640 | (Get FASTA) | NCBI Sequence Viewer |
AAD00159 | (Get FASTA) | NCBI Sequence Viewer | |
AAD00160 | (Get FASTA) | NCBI Sequence Viewer | |
AAK38150 | (Get FASTA) | NCBI Sequence Viewer | |
BAH58083 | (Get FASTA) | NCBI Sequence Viewer | |
Q62773 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_113852 ⟸ NM_031664 |
- UniProtKB: | Q62773 (UniProtKB/Swiss-Prot) |
- Sequence: |
MAKSEGRKSASQDTSENGMENPGLELMEVGNLEQGKTLEEVTQGHSLKDGLGHSSLWRRILQPFhide sequence |
RGD ID: | 13692368 | |||||||||
Promoter ID: | EPDNEW_R2893 | |||||||||
Type: | single initiation site | |||||||||
Name: | Slc28a2_1 | |||||||||
Description: | solute carrier family 28 member 2 | |||||||||
SO ACC ID: | SO:0000170 | |||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
Experiment Methods: | Single-end sequencing. | |||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:61840 | AgrOrtholog |
Ensembl Genes | ENSRNOG00000028668 | ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000024658 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOP00000034564 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000024658 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOT00000036435 | UniProtKB/TrEMBL | |
InterPro | C_nuclsd_transpt | UniProtKB/Swiss-Prot |
C_nuclsd_transpt_met_bac | UniProtKB/Swiss-Prot | |
CNT1/CNT2 | UniProtKB/Swiss-Prot | |
CNT_C_dom | UniProtKB/Swiss-Prot | |
CNT_N_dom | UniProtKB/Swiss-Prot | |
Gate_dom | UniProtKB/Swiss-Prot | |
KEGG Report | rno:60423 | UniProtKB/Swiss-Prot |
NCBI Gene | 60423 | ENTREZGENE |
PANTHER | PTHR10590 | UniProtKB/Swiss-Prot |
PTHR10590:SF11 | UniProtKB/Swiss-Prot | |
Pfam | Gate | UniProtKB/Swiss-Prot |
Nucleos_tra2_C | UniProtKB/Swiss-Prot | |
Nucleos_tra2_N | UniProtKB/Swiss-Prot | |
PharmGKB | SLC28A2 | RGD |
PhenoGen | Slc28a2 | PhenoGen |
TIGR | TC230283 | |
TIGRFAMs | nupC | UniProtKB/Swiss-Prot |
UniGene | Rn.10140 | ENTREZGENE |
UniProt | C1PHX8_RAT | UniProtKB/TrEMBL |
F1LN73_RAT | UniProtKB/TrEMBL | |
F1LXN6_RAT | UniProtKB/TrEMBL | |
Q62773 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q9QWI3 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2016-02-24 | Slc28a2 | solute carrier family 28 member 2 | Slc28a2 | solute carrier family 28 (concentrative nucleoside transporter), member 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2014-07-25 | Slc28a2 | solute carrier family 28 (concentrative nucleoside transporter), member 2 | Slc28a2 | solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2004-09-10 | Slc28a2 | solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 | solute carrier family 28, member 2 | Name updated | 1299863 | APPROVED | |
2002-06-10 | Slc28a2 | solute carrier family 28, member 2 | Name updated | 70584 | APPROVED |
Note Type | Note | Reference |
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More on Slc28a2 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
RGD Object Information | |
RGD ID: | 61840 |
Created: | 2001-04-11 |
Species: | Rattus norvegicus |
Last Modified: | 2019-11-27 |
Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.