Gene: Lca5 (lebercilin LCA5) Rattus norvegicus
Analyze
Symbol: Lca5
Name: lebercilin LCA5
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN intraciliary transport (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH blindness (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN ciliary basal body; photoreceptor connecting cilium; axoneme (ortholog); INTERACTS WITH endosulfan; 2,2',4,4',5,5'-hexachlorobiphenyl (ortholog); 2,2',5,5'-tetrachlorobiphenyl (ortholog)
AGR Description: Predicted to be involved in intraciliary transport and photoreceptor cell maintenance; predicted to localize to the axoneme and ciliary basal body; orthologous to human LCA5 (lebercilin LCA5).
Merged Description: Predicted to be involved in intraciliary transport and photoreceptor cell maintenance; predicted to localize to the axoneme and ciliary basal body; orthologous to human LCA5 (lebercilin LCA5); INTERACTS WITH endosulfan; 2,2',4,4',5,5'-hexachlorobiphenyl (ortholog); 2,2',5,5'-tetrachlorobiphenyl (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Lca5; LCA5, lebercilin; Leber congenital amaurosis 5; Leber congenital amaurosis 5 (human); leber congenital amaurosis 5 protein homolog; Lebercilin; lebercilin LCA5; LOC300866; RGD1308555; similar to RIKEN cDNA 4930431B11 gene
Orthologs:
Homo sapiens (human) : LCA5 (lebercilin LCA5)  HGNC  Alliance
Mus musculus (house mouse) : Lca5 (Leber congenital amaurosis 5 (human))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lca5 (lebercilin LCA5)
Pan paniscus (bonobo/pygmy chimpanzee) : LCA5 (lebercilin LCA5)
Canis lupus familiaris (dog) : LCA5 (lebercilin LCA5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lca5 (lebercilin LCA5)
Sus scrofa (pig) : LCA5 (lebercilin LCA5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0890,926,309 - 90,984,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0890,435,348 - 90,503,675 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4888,464,748 - 88,522,568 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1888,484,204 - 88,542,023 (-)NCBI
Celera883,973,822 - 84,031,009 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lca5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308555
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.