Gcnt2 (glucosaminyl (N-acetyl) transferase 2) - Rat Genome Database

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Gene: Gcnt2 (glucosaminyl (N-acetyl) transferase 2) Rattus norvegicus
Analyze
Symbol: Gcnt2
Name: glucosaminyl (N-acetyl) transferase 2
RGD ID: 1303198
Description: Predicted to enable N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity. Predicted to be involved in several processes, including positive regulation of heterotypic cell-cell adhesion; positive regulation of intracellular signal transduction; and transforming growth factor beta receptor signaling pathway. Predicted to be located in Golgi apparatus. Human ortholog(s) of this gene implicated in cataract and cataract 13 with adult i phenotype. Orthologous to human GCNT2 (glucosaminyl (N-acetyl) transferase 2 (I blood group)); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gcnt6; glucosaminyl (N-acetyl) transferase 2 (I blood group); glucosaminyl (N-acetyl) transferase 2, I-branching enzyme; glucosaminyl (N-acetyl) transferase 6; I-branching beta-1,6-acetylglucosaminyltransferase; Ignt; LOC102549059; N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase; N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase-like
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81724,002,592 - 24,107,339 (-)NCBIGRCr8
mRatBN7.21723,796,859 - 23,901,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,796,859 - 23,901,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1723,666,867 - 23,737,375 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01725,270,336 - 25,340,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,607,833 - 23,678,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01721,634,546 - 21,677,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,634,551 - 21,739,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01723,615,668 - 23,657,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01723,685,139 - 23,686,828 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,767,383 - 29,808,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11729,770,228 - 29,811,631 (-)NCBI
Celera1723,466,366 - 23,508,072 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrobenzenesulfonic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
bucladesine  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
diazinon  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
emodin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fentin chloride  (EXP)
formaldehyde  (ISO)
furan  (ISO)
glafenine  (EXP)
glycidol  (EXP)
inulin  (ISO)
isoprenaline  (ISO)
kainic acid  (ISO)
medroxyprogesterone acetate  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
morphine  (ISO)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
nicotine  (ISO)
nitrofen  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pravastatin  (EXP,ISO)
propiconazole  (EXP)
quercetin  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (EXP)
streptozocin  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vorinostat  (ISO)
zaragozic acid A  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. A nonsense mutation in the glucosaminyl (N-acetyl) transferase 2 gene (GCNT2): association with autosomal recessive congenital cataracts. Pras E, etal., Invest Ophthalmol Vis Sci. 2004 Jun;45(6):1940-5.
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation. Zhang T, etal., Genome Res 2004 Jan;14(1):79-89. Epub 2003 Dec 12.
Additional References at PubMed
PMID:12424189   PMID:12477932   PMID:12670491   PMID:21750175  


Genomics

Comparative Map Data
Gcnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81724,002,592 - 24,107,339 (-)NCBIGRCr8
mRatBN7.21723,796,859 - 23,901,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,796,859 - 23,901,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1723,666,867 - 23,737,375 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01725,270,336 - 25,340,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,607,833 - 23,678,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01721,634,546 - 21,677,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,634,551 - 21,739,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01723,615,668 - 23,657,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01723,685,139 - 23,686,828 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,767,383 - 29,808,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11729,770,228 - 29,811,631 (-)NCBI
Celera1723,466,366 - 23,508,072 (-)NCBICelera
Cytogenetic Map17p12NCBI
GCNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38610,521,351 - 10,629,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl610,492,223 - 10,629,368 (+)EnsemblGRCh38hg38GRCh38
GRCh37610,521,584 - 10,629,601 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36610,636,697 - 10,737,587 (+)NCBINCBI36Build 36hg18NCBI36
Celera611,750,073 - 11,858,098 (+)NCBICelera
Cytogenetic Map6p24.3-p24.2NCBI
HuRef610,397,294 - 10,505,347 (+)NCBIHuRef
CHM1_1610,523,710 - 10,631,709 (+)NCBICHM1_1
T2T-CHM13v2.0610,389,059 - 10,497,066 (+)NCBIT2T-CHM13v2.0
Gcnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,013,417 - 41,114,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,013,230 - 41,114,368 (+)EnsemblGRCm39 Ensembl
GRCm381340,859,768 - 40,960,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1340,859,754 - 40,960,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371340,955,501 - 41,056,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361340,871,106 - 40,971,866 (+)NCBIMGSCv36mm8
Celera1341,943,688 - 42,044,977 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1320.12NCBI
GCNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,173,692 - 25,279,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,163,078 - 21,268,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0610,357,919 - 10,470,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1610,638,833 - 10,750,975 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl610,626,891 - 10,750,975 (+)Ensemblpanpan1.1panPan2
GCNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,304,741 - 10,387,746 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3510,305,350 - 10,385,672 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,253,572 - 10,336,564 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,408,935 - 10,491,996 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3510,409,093 - 10,491,994 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13510,263,504 - 10,321,630 (+)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.13510,238,491 - 10,252,850 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,279,205 - 10,368,498 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03511,605,949 - 11,688,956 (+)NCBIUU_Cfam_GSD_1.0
LOC101978685
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494614,040,501 - 14,097,520 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365342,309,480 - 2,388,249 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365342,311,217 - 2,366,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100152566
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,328,214 - 7,422,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,382,731 - 7,422,199 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,640,231 - 7,731,681 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GCNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,533,622 - 61,607,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1761,533,314 - 61,642,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604410,540,562 - 10,642,529 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475615,257,623 - 15,313,668 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475615,231,222 - 15,342,469 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gcnt2
798 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:722
Count of miRNA genes:301
Interacting mature miRNAs:373
Transcripts:ENSRNOT00000035448, ENSRNOT00000060335
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 19 7 10
Low 1 43 57 41 19 41 8 8 74 16 34 1 8
Below cutoff 3

Sequence


RefSeq Acc Id: ENSRNOT00000035448   ⟹   ENSRNOP00000029151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1723,796,864 - 23,839,170 (-)Ensembl
Rnor_6.0 Ensembl1721,634,551 - 21,677,477 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000060335   ⟹   ENSRNOP00000057083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1723,796,859 - 23,901,611 (-)Ensembl
Rnor_6.0 Ensembl1721,634,551 - 21,739,408 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078010   ⟹   ENSRNOP00000075374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1723,796,864 - 23,868,369 (-)Ensembl
Rnor_6.0 Ensembl1721,634,551 - 21,705,773 (-)Ensembl
RefSeq Acc Id: NM_001001511   ⟹   NP_001001511
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81724,002,592 - 24,044,647 (-)NCBI
mRatBN7.21723,796,859 - 23,838,924 (-)NCBI
Rnor_6.01721,634,546 - 21,677,477 (-)NCBI
Rnor_5.01723,615,668 - 23,657,985 (-)NCBI
RGSC_v3.41729,767,383 - 29,808,950 (-)RGD
Celera1723,466,366 - 23,508,072 (-)RGD
Sequence:
RefSeq Acc Id: NM_001400851   ⟹   NP_001387780
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81724,002,592 - 24,073,548 (-)NCBI
mRatBN7.21723,796,859 - 23,867,830 (-)NCBI
RefSeq Acc Id: XM_039095686   ⟹   XP_038951614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81724,002,592 - 24,107,335 (-)NCBI
mRatBN7.21723,796,859 - 23,901,621 (-)NCBI
RefSeq Acc Id: XR_005495275
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81724,007,886 - 24,044,413 (-)NCBI
mRatBN7.21723,799,421 - 23,841,461 (-)NCBI
RefSeq Acc Id: XR_005495276
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81724,007,886 - 24,107,339 (-)NCBI
mRatBN7.21723,799,421 - 23,901,625 (-)NCBI
RefSeq Acc Id: NP_001001511   ⟸   NM_001001511
- Peptide Label: isoform 2
- UniProtKB: Q6T5D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029151   ⟸   ENSRNOT00000035448
RefSeq Acc Id: ENSRNOP00000075374   ⟸   ENSRNOT00000078010
RefSeq Acc Id: ENSRNOP00000057083   ⟸   ENSRNOT00000060335
RefSeq Acc Id: XP_038951614   ⟸   XM_039095686
- Peptide Label: isoform X1
- UniProtKB: F7FDB0 (UniProtKB/TrEMBL),   Q6T5E1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387780   ⟸   NM_001400851
- Peptide Label: isoform 1
- UniProtKB: Q6T5E0 (UniProtKB/TrEMBL),   A0A0G2KAF0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6T5D9-F1-model_v2 AlphaFold Q6T5D9 1-400 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700378
Promoter ID:EPDNEW_R10901
Type:single initiation site
Name:Gcnt2_1
Description:glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01721,677,231 - 21,677,291EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303198 AgrOrtholog
BioCyc Gene G2FUF-9723 BioCyc
BioCyc Pathway PWY-7837 [i antigen and I antigen biosynthesis] BioCyc
BioCyc Pathway Image PWY-7837 BioCyc
Ensembl Genes ENSRNOG00000023778 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035448 ENTREZGENE
  ENSRNOT00000035448.5 UniProtKB/TrEMBL
  ENSRNOT00000060335.4 UniProtKB/TrEMBL
  ENSRNOT00000078010 ENTREZGENE
  ENSRNOT00000078010.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936188 IMAGE-MGC_LOAD
InterPro Glyco_trans_14 UniProtKB/TrEMBL
KEGG Report rno:306860 UniProtKB/TrEMBL
MGC_CLONE MGC:124528 IMAGE-MGC_LOAD
NCBI Gene 306860 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 14 FAMILY MEMBER UniProtKB/TrEMBL
  N-ACETYLLACTOSAMINIDE BETA-1,6-N-ACETYLGLUCOSAMINYL-TRANSFERASE UniProtKB/TrEMBL
Pfam Branch UniProtKB/TrEMBL
PhenoGen Gcnt2 PhenoGen
RatGTEx ENSRNOG00000023778 RatGTEx
UniProt A0A0G2KAF0 ENTREZGENE, UniProtKB/TrEMBL
  F7FDB0 ENTREZGENE
  Q6T5D9 ENTREZGENE, UniProtKB/TrEMBL
  Q6T5E0 ENTREZGENE, UniProtKB/TrEMBL
  Q6T5E1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FDB0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-25 Gcnt2  glucosaminyl (N-acetyl) transferase 2  Gcnt2  glucosaminyl (N-acetyl) transferase 2 (I blood group)  Name changed 629549 APPROVED
2022-02-15 Gcnt2  glucosaminyl (N-acetyl) transferase 2 (I blood group)  LOC102549059  N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase-like  Data merged from RGD:7666938 737654 PROVISIONAL
2021-06-01 Gcnt2  glucosaminyl (N-acetyl) transferase 2 (I blood group)  Gcnt6  glucosaminyl (N-acetyl) transferase 6  Data merged from RGD:1597394 737654 PROVISIONAL
2019-04-16 Gcnt2  glucosaminyl (N-acetyl) transferase 2 (I blood group)  Gcnt2  glucosaminyl (N-acetyl) transferase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-03-16 Gcnt2  glucosaminyl (N-acetyl) transferase 2  Gcnt2  glucosaminyl (N-acetyl) transferase 2, I-branching enzyme  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-12-03 Gcnt6  glucosaminyl (N-acetyl) transferase 6  LOC689092  similar to 60S ribosomal protein L9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102549059  N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC689092  similar to 60S ribosomal protein L9      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-17 Gcnt2  glucosaminyl (N-acetyl) transferase 2, I-branching enzyme  Ignt  I-branching beta-1,6-acetylglucosaminyltransferase  Symbol and Name updated 1299863 APPROVED