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ONTOLOGY REPORT - ANNOTATIONS

Term:macroautophagy
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Accession:GO:0016236 term browser browse the term
Definition:The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded.
Comment:Targeted macroautophagy sometimes targets regions of cytoplasm containing non-self, such as virus particles or components (e.g. see PMID:20159618). As this is essentially the same process as macroautophagy that encloses and digests only self, the term autophagy is still used despite the enclosure of some non-self (non-auto) entities.
Synonyms:broad_synonym: autophagy
 alt_id: GO:0034262

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macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Acbd5 acyl-CoA binding domain containing 5 NOT ISO (PMID:24535825) RGD PMID:24535825 NCBI chr17:89,882,465...89,923,982
Ensembl chr17:89,883,615...89,923,423 		JBrowse link
G Atg10 autophagy related 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:19,853,546...20,152,918
Ensembl chr 2:19,853,546...20,152,884 		JBrowse link
G Atg13 autophagy related 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg14 autophagy related 14 ISO (PMID:23878393) RGD PMID:23878393 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Atg3 autophagy related 3 ISO (MGI:MGI:5562485|PMID:24035364) RGD PMID:24035364 MGI:MGI:5562485 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
G Atg5 autophagy related 5 ISO MGI:MGI:3612279 (MGI:MGI:4457987|PMID:20453062), (MGI:MGI:5494529|PMID:22496425), (MGI:MGI:5500861|PMID:23704209), (MGI:MGI:5562485|PMID:24035364) RGD PMID:20453062, PMID:22496425, PMID:23704209, PMID:24035364 MGI:MGI:4457987, MGI:MGI:5494529, MGI:MGI:5500861, MGI:MGI:5562485 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 ISO (PMID:22354037)
MGI:MGI:1934631|MGI:MGI:3587769 (MGI:MGI:5494529|PMID:22496425), (MGI:MGI:5500861|PMID:23704209), (MGI:MGI:5562485|PMID:24035364)		 RGD PMID:22354037, PMID:22496425, PMID:23704209, PMID:24035364 MGI:MGI:5494529, MGI:MGI:5500861, MGI:MGI:5562485 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Becn1 beclin 1 ISS
ISO		 GO_REF:0000024
MGI:MGI:1097712|MGI:MGI:2683833 (MGI:MGI:2682527|PMID:14657337), (MGI:MGI:3723543|PMID:17468177), (MGI:MGI:5619439|PMID:23332761)		 UniProt
RGD		 PMID:14657337, PMID:17468177, PMID:23332761 GO_REF:0000024, MGI:MGI:2682527, MGI:MGI:3723543, MGI:MGI:5619439 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO MGI:MGI:2388888 (MGI:MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:MGI:3690270 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:39,254,883...39,271,238
Ensembl chr 8:39,254,889...39,266,959 		JBrowse link
G Gabarap GABA type A receptor-associated protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Hdac10 histone deacetylase 10 ISS
ISO		 GO_REF:0000024
(PMID:23801752)		 UniProt
RGD		 PMID:23801752 GO_REF:0000024 NCBI chr 7:130,102,335...130,109,036
Ensembl chr 7:130,102,347...130,107,437 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:7,331,321...7,397,588
Ensembl chr20:7,331,326...7,397,448 		JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Nbr1 NBR1, autophagy cargo receptor IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000002
PMID:21873635
GO_REF:0000024
(PMID:19250911)		 Ensembl
InterPro
UniProt
RGD		 PMID:19250911, PMID:21873635 GO_REF:0000002, GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha ISO MGI:MGI:2685054 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr 1:185,210,922...185,326,314
Ensembl chr 1:185,210,922...185,326,314 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta ISO MGI:MGI:1203729 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr13:49,848,939...49,909,404
Ensembl chr13:49,850,189...49,911,202 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 ISS
ISO		 GO_REF:0000024
(MGI:MGI:5619439|PMID:23332761), (MGI:MGI:5630037|PMID:25578879)		 UniProt
RGD		 PMID:23332761, PMID:25578879 GO_REF:0000024, MGI:MGI:5619439, MGI:MGI:5630037 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681 		JBrowse link
G Plaa phospholipase A2, activating protein ISO
ISS		 (PMID:27753622)
GO_REF:0000024		 RGD
UniProt		 PMID:27753622 GO_REF:0000024 NCBI chr 5:113,548,913...113,578,928
Ensembl chr 5:113,548,913...113,578,928 		JBrowse link
G Sqstm1 sequestosome 1 ISO
ISS		 (PMID:20168092)
GO_REF:0000024		 RGD
UniProt		 PMID:20168092 GO_REF:0000024 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:1,144,641...1,747,732
Ensembl chr 9:1,145,700...1,746,397 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:5500861|PMID:23704209) RGD PMID:23704209 MGI:MGI:5500861 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464 		JBrowse link
G Tmem74 transmembrane protein 74 ISO (PMID:18294959) RGD PMID:18294959 NCBI chr 7:82,684,666...82,689,753
Ensembl chr 7:82,686,213...82,687,130 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 ISO MGI:MGI:1931135|MGI:MGI:5637673 (MGI:MGI:5582129|PMID:24713655) RGD PMID:24713655 MGI:MGI:5582129 NCBI chr 3:150,910,398...150,918,525
Ensembl chr 3:150,910,398...150,918,525 		JBrowse link
G Ubqln1 ubiquilin 1 ISO (PMID:20529957) RGD PMID:20529957 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Ubxn6 UBX domain protein 6 ISO (PMID:27753622) RGD PMID:27753622 NCBI chr 9:10,995,516...11,000,643
Ensembl chr 9:10,995,198...11,000,642 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (PMID:22354037)
UniProtKB:O70405 (MGI:MGI:5285135|PMID:21258367), (MGI:MGI:5607224|PMID:21855797)		 RGD PMID:21258367, PMID:21855797, PMID:22354037 MGI:MGI:5285135, MGI:MGI:5607224 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
G Vcp valosin-containing protein ISO
IBA
ISS		 (PMID:27753622)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:27753622, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991 		JBrowse link
G Yod1 YOD1 deubiquitinase ISO
ISS		 (PMID:27753622)
GO_REF:0000024		 RGD
UniProt		 PMID:27753622 GO_REF:0000024 NCBI chr13:47,441,296...47,443,013
Ensembl chr13:47,440,803...47,443,188 		JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 6:107,031,411...107,080,590
Ensembl chr 6:107,031,412...107,080,524 		JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 NOT ISO (PMID:24535825) RGD PMID:24535825 NCBI chr17:89,882,465...89,923,982
Ensembl chr17:89,883,615...89,923,423 		JBrowse link
G Atg5 autophagy related 5 ISO
IEA		 (PMID:22982048)
GO_REF:0000107
(MGI:MGI:5751672|PMID:22982048)		 RGD
Ensembl		 PMID:22982048 GO_REF:0000107, MGI:MGI:5751672 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Sqstm1 sequestosome 1 ISO
IBA
ISS		 UniProtKB:Q562E7 (PMID:28404643)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:28404643, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
G Ubqln1 ubiquilin 1 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:21143716)		 Ensembl
UniProt
RGD		 PMID:21143716 GO_REF:0000024, GO_REF:0000107 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 ISO (PMID:20168092), (PMID:20417604) RGD PMID:20168092, PMID:20417604 NCBI chr14:9,169,409...9,384,835
Ensembl chr14:9,141,512...9,381,870 		JBrowse link
G Wdr81 WD repeat domain 81 ISO
ISS		 (PMID:28404643)
GO_REF:0000024		 RGD
UniProt		 PMID:28404643 GO_REF:0000024 NCBI chr10:62,273,817...62,287,213
Ensembl chr10:62,273,800...62,287,189 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:49,290,112...49,844,547 JBrowse link
G AABR07048308.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:71,999,926...72,000,318 JBrowse link
G AABR07072668.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:59,991,111...59,991,590 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO (PMID:25215947) RGD PMID:25215947 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068 		JBrowse link
G Atg101 autophagy related 101 ISO
IBA		 (PMID:19597335)
PMID:21873635		 RGD PMID:19597335, PMID:21873635 RGD:13792537 NCBI chr 7:142,929,381...142,938,559
Ensembl chr 7:142,929,400...142,938,554 		JBrowse link
G Atg12 autophagy related 12 ISO
IBA		 (MGI:MGI:2137756|PMID:11266458)
PMID:21873635		 RGD PMID:11266458, PMID:21873635 MGI:MGI:2137756, RGD:13792537 NCBI chr18:40,721,799...40,732,143
Ensembl chr18:40,721,800...40,732,126 		JBrowse link
G Atg13 autophagy related 13 ISO
IBA		 (PMID:19211835)
PMID:21873635
(MGI:MGI:3849242|PMID:19258318)		 RGD PMID:19211835, PMID:19258318, PMID:21873635 MGI:MGI:3849242, RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg14 autophagy related 14 ISO
IBA		 (PMID:19270696)
PMID:21873635		 RGD PMID:19270696, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Atg16l1 autophagy related 16-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT IBA
ISO		 PMID:21873635
(MGI:MGI:6436405|PMID:22082872)		 RGD PMID:22082872, PMID:21873635 MGI:MGI:6436405, RGD:13792537 NCBI chr 1:166,401,271...166,415,078
Ensembl chr 1:166,401,271...166,413,564 		JBrowse link
G Atg2a autophagy related 2A ISO
IBA		 (PMID:28561066)
PMID:21873635		 RGD PMID:28561066, PMID:21873635 RGD:13792537 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267 		JBrowse link
G Atg2b autophagy related 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720 		JBrowse link
G Atg3 autophagy related 3 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:4835103|PMID:20723759), (MGI:MGI:4880808|PMID:21220506)		 UniProt
RGD		 PMID:20723759, PMID:21220506, PMID:21873635 GO_REF:0000024, MGI:MGI:4835103, MGI:MGI:4880808, RGD:13792537 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase ISO (MGI:MGI:5630037|PMID:25578879) RGD PMID:25578879 MGI:MGI:5630037 NCBI chr 9:100,888,457...100,920,123
Ensembl chr 9:100,888,501...100,918,637 		JBrowse link
G Atg5 autophagy related 5 IMP
IBA
ISO		 PMID:21873635
(MGI:MGI:2137756|PMID:11266458), (MGI:MGI:5500861|PMID:23704209)		 RGD PMID:11266458, PMID:23704209, PMID:16420522, PMID:21873635 MGI:MGI:2137756, MGI:MGI:5500861, RGD:1643189, RGD:13792537 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Atg7 autophagy related 7 ISO
IBA		 (MGI:MGI:4420830|PMID:20080761), (MGI:MGI:5500861|PMID:23704209)
PMID:21873635		 RGD PMID:20080761, PMID:23704209, PMID:21873635 MGI:MGI:4420830, MGI:MGI:5500861, RGD:13792537 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124 		JBrowse link
G Atg9a autophagy related 9A ISO
IBA		 (PMID:15755735), (PMID:22456507)
PMID:21873635
MGI:MGI:4417824 (MGI:MGI:5494547|PMID:22456507), (MGI:MGI:5509287|PMID:23402761)		 RGD PMID:15755735, PMID:22456507, PMID:23402761, PMID:21873635 MGI:MGI:5494547, MGI:MGI:5509287, RGD:13792537 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382 		JBrowse link
G Atg9b autophagy related 9B ISO
IBA		 (PMID:15755735)
PMID:21873635		 RGD PMID:15755735, PMID:21873635 RGD:13792537 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029 		JBrowse link
G Bag3 BAG cochaperone 3 IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 1:199,941,258...199,965,191
Ensembl chr 1:199,941,161...199,965,191 		JBrowse link
G Becn1 beclin 1 IMP
IBA
ISS
ISO		 PMID:21873635
GO_REF:0000024
(MGI:MGI:5619439|PMID:23332761)		 UniProt
RGD		 PMID:23332761, PMID:16420522, PMID:21873635 GO_REF:0000024, MGI:MGI:5619439, RGD:1643189, RGD:13792537 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Becn2 beclin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,971,720...93,974,467
Ensembl chr13:93,972,426...93,974,410 		JBrowse link
G Ctsd cathepsin D ISO (MGI:MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:MGI:3057045 NCBI chr 1:215,541,570...215,553,446
Ensembl chr 1:215,541,542...215,553,451 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 ISO
IEA		 (PMID:21072319)
GO_REF:0000107		 RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:211,243,398...211,323,283
Ensembl chr 2:211,246,068...211,322,719 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 ISO
IBA		 (PMID:23182941)
PMID:21873635		 RGD PMID:23182941, PMID:21873635 RGD:13792537 NCBI chr10:59,741,772...59,743,338
Ensembl chr10:59,741,772...59,743,315 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin ISO MGI:MGI:2182627 (MGI:MGI:5913112|PMID:24430976) RGD PMID:24430976 MGI:MGI:5913112 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512 		JBrowse link
G Gabarap GABA type A receptor-associated protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:163,293,724...163,302,866
Ensembl chr 4:163,293,724...163,302,858 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Irgm immunity-related GTPase M ISO (PMID:16888103)
(MGI:MGI:3656111|PMID:16888103)		 RGD PMID:16888103 MGI:MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G LOC100359937 GABA(A) receptor-associated protein-like 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:95,943,674...95,944,604
Ensembl chr19:44,164,935...44,175,770 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA
IBA
ISO		 PMID:11060023
PMID:21873635
(PMID:24290141)		 RGD PMID:24290141, PMID:11060023, PMID:21873635 RGD:8554284, RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Nsfl1c NSFL1 cofactor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:146,980,923...147,005,478
Ensembl chr 3:146,980,923...147,005,439 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:137,824,136...137,889,144
Ensembl chr 6:137,824,213...137,887,418 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IMP
IBA
ISO		 PMID:21873635
(MGI:MGI:5565574|PMID:24098492)		 RGD PMID:24098492, PMID:12453151, PMID:21873635 MGI:MGI:5565574, RGD:2303129, RGD:13792537 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895 		JBrowse link
G Psen1 presenilin 1 ISO MGI:MGI:2149116 (MGI:MGI:3057045|PMID:15452145) RGD PMID:15452145 MGI:MGI:3057045 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798 		JBrowse link
G Rab19 RAB19, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,166,412...67,176,141
Ensembl chr 4:67,165,883...67,176,363 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family ISO
IBA
ISS		 (PMID:22939626)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:22939626, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:104,475,082...104,500,176
Ensembl chr14:104,475,082...104,501,020 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,483,529...220,491,469
Ensembl chr 1:220,480,834...220,491,469 		JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO
IBA		 (PMID:22452336)
PMID:21873635		 RGD PMID:22452336, PMID:21873635 RGD:13792537 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family ISO (MGI:MGI:5447922|PMID:18448665) RGD PMID:18448665 MGI:MGI:5447922 NCBI chr 2:140,541,619...140,552,220
Ensembl chr 2:140,541,619...140,552,220 		JBrowse link
G Rab43 RAB43, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,695,012...119,714,490
Ensembl chr 4:119,695,013...119,714,302 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 ISO
IBA		 (MGI:MGI:3849242|PMID:19258318)
PMID:21873635		 RGD PMID:19258318, PMID:21873635 MGI:MGI:3849242, RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 ISO
IBA		 (PMID:26416964)
PMID:21873635		 RGD PMID:26416964, PMID:21873635 RGD:13792537 NCBI chr 9:81,401,080...81,422,016
Ensembl chr 9:81,402,124...81,421,990 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:6305034|PMID:30568238)
(PMID:30568238), (PMID:30842662)		 UniProt
RGD		 PMID:30568238, PMID:30842662, PMID:21873635 GO_REF:0000024, MGI:MGI:6305034, RGD:13792537 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828 		JBrowse link
G Stx12 syntaxin 12 ISO
IEA		 (PMID:24095276)
GO_REF:0000107		 RGD
Ensembl		 PMID:24095276 GO_REF:0000107 NCBI chr 5:151,044,050...151,072,893
Ensembl chr 5:151,044,329...151,072,904 		JBrowse link
G Synpo2 synaptopodin 2 IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:227,255,243...227,411,924
Ensembl chr 2:227,255,902...227,411,964 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO (MGI:MGI:6296816|PMID:23908015) RGD PMID:23908015 MGI:MGI:6296816 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464 		JBrowse link
G Tmem41b transmembrane protein 41B ISO
ISS		 (PMID:30093494), (PMID:30126924), (PMID:30933966)
GO_REF:0000024		 RGD
UniProt		 PMID:30093494, PMID:30126924, PMID:30933966 GO_REF:0000024 NCBI chr 1:174,605,833...174,620,192
Ensembl chr 1:174,605,834...174,620,064 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:24,402,895...24,419,651
Ensembl chr 5:24,410,863...24,416,888 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 ISO
IBA
ISS
IEA		 (PMID:19056683)
PMID:21873635
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:19056683, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 3:150,910,398...150,918,525
Ensembl chr 3:150,910,398...150,918,525 		JBrowse link
G Trappc8 trafficking protein particle complex 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,298,673...15,375,034
Ensembl chr18:15,298,978...15,375,031 		JBrowse link
G Ubqln1 ubiquilin 1 ISO
IBA
IEA		 (PMID:20529957)
PMID:21873635
GO_REF:0000107		 RGD
Ensembl		 PMID:20529957, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Ubqln2 ubiquilin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:18,723,313...18,726,732
Ensembl chr  X:18,723,341...18,726,732 		JBrowse link
G Ubxn2a UBX domain protein 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:28,969,471...28,997,987
Ensembl chr 6:28,973,025...28,994,519 		JBrowse link
G Ubxn2b UBX domain protein 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:19,285,368...19,314,199
Ensembl chr 5:19,284,548...19,311,088 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (MGI:MGI:3849242|PMID:19258318) RGD PMID:19258318 MGI:MGI:3849242 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
G Vmp1 vacuole membrane protein 1 ISS
ISO		 GO_REF:0000024
(PMID:30093494), (PMID:30933966)		 UniProt
RGD		 PMID:30093494, PMID:30933966 GO_REF:0000024 NCBI chr10:73,901,988...74,001,900
Ensembl chr10:73,902,837...74,001,895 		JBrowse link
G Wdr45 WD repeat domain 45 ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:28561066)		 UniProt
Ensembl
RGD		 PMID:28561066, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235 		JBrowse link
G Wdr45b WD repeat domain 45B ISO
IBA		 (PMID:28561066)
PMID:21873635		 RGD PMID:28561066, PMID:21873635 RGD:13792537 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 ISO
IBA		 (PMID:28561066)
PMID:21873635		 RGD PMID:28561066, PMID:21873635 RGD:13792537 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:20505359), (PMID:28561066)		 UniProt
RGD		 PMID:20505359, PMID:28561066, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO MGI:MGI:2388888 (MGI:MGI:3690270|PMID:16714284) RGD PMID:16714284 MGI:MGI:3690270 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog ISO
IBA		 MGI:MGI:5505596 (MGI:MGI:5488852|PMID:23479740)
PMID:21873635		 RGD PMID:23479740, PMID:21873635 MGI:MGI:5488852, RGD:13792537 NCBI chr18:74,299,965...74,397,115
Ensembl chr18:74,299,931...74,395,547 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO
IBA
ISS		 (MGI:MGI:5805578|PMID:27628032)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:27628032, PMID:21873635 GO_REF:0000024, MGI:MGI:5805578, RGD:13792537 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044 		JBrowse link
G Lix1 limb and CNS expressed 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:59,156,021...59,212,878
Ensembl chr 1:59,156,251...59,214,452 		JBrowse link
G Lix1l limb and CNS expressed 1 like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,726,110...198,751,987
Ensembl chr 2:198,726,118...198,751,985 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr 3:150,801,289...150,802,935
Ensembl chr 3:150,801,289...150,802,935 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
IBA		 (PMID:28223137)
PMID:21873635		 RGD PMID:28223137, PMID:21873635 RGD:13792537 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:75,864,144...75,874,567
Ensembl chr16:75,873,881...75,874,519 		JBrowse link
G Mcoln1 mucolipin 1 ISO MGI:MGI:3794204 (MGI:MGI:4839416|PMID:20600908) RGD PMID:20600908 MGI:MGI:4839416 NCBI chr12:2,054,629...2,068,682
Ensembl chr12:2,054,680...2,068,682 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 ISO (MGI:MGI:6155546|PMID:29514215) RGD PMID:29514215 MGI:MGI:6155546 NCBI chr 2:127,706,618...127,784,129
Ensembl chr 2:127,699,761...127,781,003 		JBrowse link
G Rubcnl rubicon like autophagy enhancer ISO
IBA		 (PMID:28306502), (PMID:30704899)
PMID:21873635
(MGI:MGI:6282647|PMID:30704899)		 RGD PMID:28306502, PMID:30704899, PMID:21873635 MGI:MGI:6282647, RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599 		JBrowse link
G Snap29 synaptosome associated protein 29 ISO
ISS		 (PMID:23217709)
GO_REF:0000024		 RGD
UniProt		 PMID:23217709 GO_REF:0000024 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107 		JBrowse link
G Snapin SNAP-associated protein ISO MGI:MGI:3608768 (MGI:MGI:4879078|PMID:20920792), (MGI:MGI:5504339|PMID:22797916) RGD PMID:20920792, PMID:22797916 MGI:MGI:4879078, MGI:MGI:5504339 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743 		JBrowse link
G Snx14 sorting nexin 14 ISO (PMID:25848753) RGD PMID:25848753 NCBI chr 8:96,018,943...96,088,405
Ensembl chr 8:96,023,445...96,088,405 		JBrowse link
G Stx17 syntaxin 17 ISS
ISO		 GO_REF:0000024
(PMID:23217709), (PMID:24554770), (PMID:28306502)		 UniProt
RGD		 PMID:23217709, PMID:24554770, PMID:28306502 GO_REF:0000024 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730 		JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 ISO
ISS		 (PMID:22342342)
GO_REF:0000024		 RGD
UniProt		 PMID:22342342 GO_REF:0000024 NCBI chr12:12,374,132...12,403,382
Ensembl chr12:12,374,790...12,402,552 		JBrowse link
G Ubqln1 ubiquilin 1 ISO
IEA		 (PMID:23459205)
GO_REF:0000107		 RGD
Ensembl		 PMID:23459205 GO_REF:0000107 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Uvrag UV radiation resistance associated ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:163,844,804...164,101,568
Ensembl chr 1:163,844,818...164,101,578 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT ISO (PMID:23217709) RGD PMID:23217709 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 ISO
ISS		 (PMID:23217709)
GO_REF:0000024		 RGD
UniProt		 PMID:23217709 GO_REF:0000024 NCBI chr 4:100,250,301...100,252,756
Ensembl chr 4:100,250,301...100,252,755 		JBrowse link
G Vcp valosin-containing protein ISO
IBA
ISS		 (PMID:20104022)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:20104022, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:24554770), (PMID:25783203) RGD PMID:24554770, PMID:25783203 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT ISO (PMID:23217709) RGD PMID:23217709 NCBI chr 6:102,340,261...102,353,612
Ensembl chr 6:102,339,857...102,353,403 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT ISO (PMID:20505359) RGD PMID:20505359 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 ISO (PMID:25686604) RGD PMID:25686604 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Snap29 synaptosome associated protein 29 IEA
ISO		 GO_REF:0000107
(PMID:25686604)		 Ensembl
RGD		 PMID:25686604 GO_REF:0000107 NCBI chr11:87,827,633...87,858,107
Ensembl chr11:87,827,651...87,858,107 		JBrowse link
G Stx17 syntaxin 17 ISO (PMID:25686604) RGD PMID:25686604 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 IEA
ISO		 GO_REF:0000107
(PMID:25686604)		 Ensembl
RGD		 PMID:25686604 GO_REF:0000107 NCBI chr 4:100,250,301...100,252,756
Ensembl chr 4:100,250,301...100,252,755 		JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637 		JBrowse link
G Gba glucosylceramidase beta ISO (MGI:MGI:5501380|PMID:23707074) RGD PMID:23707074 MGI:MGI:5501380 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha ISO MGI:MGI:2685045 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr 1:185,210,922...185,326,314
Ensembl chr 1:185,210,922...185,326,314 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta ISO MGI:MGI:1203729 (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr13:49,848,939...49,909,404
Ensembl chr13:49,850,189...49,911,202 		JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer ISO
IBA		 (PMID:28306502)
PMID:21873635		 RGD PMID:28306502, PMID:21873635 RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599 		JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:30538141)
(MGI:MGI:6273736|PMID:30538141)		 RGD PMID:30538141 MGI:MGI:6273736 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:MGI:5698740 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Rubcnl rubicon like autophagy enhancer ISO
IBA		 (PMID:28306502)
PMID:21873635		 RGD PMID:28306502, PMID:21873635 RGD:13792537 NCBI chr15:57,065,512...57,109,197
Ensembl chr15:57,065,428...57,102,599 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:11,433,815...11,526,465
Ensembl chr12:11,407,213...11,526,465 		JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rb1cc1 RB1-inducible coiled-coil 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G Stbd1 starch binding domain 1 ISO
ISS		 (PMID:20810658)
GO_REF:0000024		 RGD
GO_Central		 PMID:20810658 GO_REF:0000024 NCBI chr14:16,976,355...16,979,760
Ensembl chr14:16,976,356...16,979,760 		JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor ISO
IEA		 (PMID:29902443)
GO_REF:0000107		 RGD
Ensembl		 PMID:29902443 GO_REF:0000107 NCBI chr 4:113,887,030...113,890,103
Ensembl chr 4:113,887,115...113,890,101 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO
ISS		 (MGI:MGI:5689086|PMID:23708524)
GO_REF:0000024		 RGD
GO_Central		 PMID:23708524 GO_REF:0000024, MGI:MGI:5689086 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 ISO (PMID:21753002), (PMID:25215947) RGD PMID:21753002, PMID:25215947 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068 		JBrowse link
G Atg13 autophagy related 13 ISO
IBA		 (MGI:MGI:5607224|PMID:21855797)
PMID:21873635		 RGD PMID:21855797, PMID:21873635 MGI:MGI:5607224, RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg14 autophagy related 14 ISO
IBA		 (PMID:23878393)
PMID:21873635		 RGD PMID:23878393, PMID:21873635 RGD:13792537 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753 		JBrowse link
G Becn1 beclin 1 ISO (PMID:23878393) RGD PMID:23878393 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO
ISS		 (PMID:28017329)
GO_REF:0000024		 RGD
UniProt		 PMID:28017329 GO_REF:0000024 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058 		JBrowse link
G Phb2 prohibitin 2 ISO
ISS		 (PMID:28017329)
(MGI:MGI:6436385|PMID:28017329)
GO_REF:0000024		 RGD
UniProt		 PMID:28017329 GO_REF:0000024, MGI:MGI:6436385 NCBI chr 4:157,230,769...157,235,375
Ensembl chr 4:157,230,769...157,235,367 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO MGI:MGI:1921624 (MGI:MGI:5603233|PMID:24949970)
(PMID:28017329)		 RGD PMID:24949970, PMID:28017329 MGI:MGI:5603233 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Sqstm1 sequestosome 1 ISO
IBA		 UniProtKB:Q9JK66 (PMID:20457763)
PMID:21873635		 RGD PMID:20457763, PMID:21873635 RGD:13792537 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (MGI:MGI:5607224|PMID:21855797) RGD PMID:21855797 MGI:MGI:5607224 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 ISO MGI:MGI:2683833 (MGI:MGI:5888970|PMID:27994061) RGD PMID:27994061 MGI:MGI:5888970 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Chmp4b charged multivesicular body protein 4B ISO (PMID:21975012) RGD PMID:21975012 NCBI chr 3:150,188,275...150,227,453
Ensembl chr 3:150,188,455...150,227,405 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO (MGI:MGI:5543871|PMID:23918802) RGD PMID:23918802 MGI:MGI:5543871 NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 ISO
ISS		 (PMID:25495476)
GO_REF:0000024		 RGD
GO_Central		 PMID:25495476 GO_REF:0000024 NCBI chr 8:39,305,128...39,350,270
Ensembl chr 8:39,305,128...39,350,270 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 ISO
ISS
IEA		 (PMID:25495476)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:963,903...1,003,955
Ensembl chr 6:963,907...1,004,001 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO
IBA		 (PMID:23916833)
PMID:21873635		 RGD PMID:23916833, PMID:21873635 RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584 		JBrowse link
G Mtm1 myotubularin 1 ISO
IBA		 MGI:MGI:2450997 (MGI:MGI:5510937|PMID:23695157)
PMID:21873635		 RGD PMID:23695157, PMID:21873635 MGI:MGI:5510937, RGD:13792537 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator ISS
ISO		 GO_REF:0000024
(PMID:20181828)		 UniProt
RGD		 PMID:20181828 GO_REF:0000024 NCBI chr 1:194,767,484...194,769,519
Ensembl chr 1:194,767,474...194,769,524 		JBrowse link
G Phf23 PHD finger protein 23 ISO
IBA
ISS		 (PMID:25484098)
PMID:21873635
GO_REF:0000024		 RGD
GO_Central		 PMID:25484098, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:56,605,078...56,609,236
Ensembl chr10:56,605,140...56,609,233 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Scfd1 sec1 family domain containing 1 ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:72,124,408...72,202,703
Ensembl chr 6:72,124,417...72,202,713 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:200,076,079...200,096,861
Ensembl chr 2:200,076,054...200,098,076 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:47,019,326...47,026,465
Ensembl chr10:47,018,974...47,026,465 		JBrowse link
G Tmem39a transmembrane protein 39a ISO
IBA
ISS		 (PMID:31806350)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:31806350, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:64,723,181...64,752,514
Ensembl chr11:64,723,186...64,752,544 		JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Phf23 PHD finger protein 23 ISO
IBA
ISS		 (PMID:25484098)
PMID:21873635
GO_REF:0000024		 RGD
GO_Central		 PMID:25484098, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:56,605,078...56,609,236
Ensembl chr10:56,605,140...56,609,233 		JBrowse link
G Rubcn rubicon autophagy regulator ISO
IBA		 (PMID:21062745)
PMID:21873635		 RGD PMID:21062745, PMID:21873635 RGD:13792537 NCBI chr11:71,150,506...71,199,254
Ensembl chr11:71,151,132...71,197,035 		JBrowse link
G Tmem39a transmembrane protein 39a ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(PMID:31806350)		 UniProt
RGD		 PMID:31806350, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:64,723,181...64,752,514
Ensembl chr11:64,723,186...64,752,544 		JBrowse link
G Ubqln4 ubiquilin 4 ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:187,915,701...187,931,035
Ensembl chr 2:187,915,751...187,931,035 		JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 ISO MGI:MGI:2429784 (MGI:MGI:5430482|PMID:20705711) RGD PMID:20705711 MGI:MGI:5430482 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584 		JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr16:22,250,452...22,306,667
Ensembl chr16:22,250,470...22,306,662 		JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO
IBA		 (PMID:25327288)
PMID:21873635
(MGI:MGI:3690270|PMID:16714284), (MGI:MGI:5563734|PMID:23274896)		 RGD PMID:16714284, PMID:23274896, PMID:25327288, PMID:21873635 MGI:MGI:3690270, MGI:MGI:5563734, RGD:13792537 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 ISO MGI:MGI:1857409|MGI:MGI:1891828 (MGI:MGI:3723543|PMID:17468177) RGD PMID:17468177 MGI:MGI:3723543 NCBI chr18:3,616,878...3,662,656
Ensembl chr18:3,616,878...3,662,683 		JBrowse link
G Nrbp2 nuclear receptor binding protein 2 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 7:117,145,106...117,151,694
Ensembl chr 7:117,145,961...117,151,694 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 ISO MGI:MGI:4044390 (MGI:MGI:5588624|PMID:24797518) RGD PMID:24797518 MGI:MGI:5588624 NCBI chr10:65,781,994...65,790,833
Ensembl chr10:65,780,494...65,790,272 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 ISO (PMID:24475161) RGD PMID:24475161 NCBI chr13:73,423,396...73,460,890
Ensembl chr13:73,423,397...73,460,935 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:47,019,326...47,026,465
Ensembl chr10:47,018,974...47,026,465 		JBrowse link
G Tsc1 TSC complex subunit 1 IMP PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145 		JBrowse link
G Tsc2 TSC complex subunit 2 IMP RGD PMID:24599401 RGD:11568679 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 ISO (PMID:22622177) RGD PMID:22622177 NCBI chr10:107,292,828...107,324,355
Ensembl chr10:107,292,828...107,324,355 		JBrowse link
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A ISO MGI:MGI:5648633 (MGI:MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:MGI:5603233 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Rnf41 ring finger protein 41 ISO MGI:MGI:1921624 (MGI:MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:MGI:5603233 NCBI chr 7:2,827,242...2,854,230
Ensembl chr 7:2,827,247...2,852,681 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase ISO MGI:MGI:5319187 (MGI:MGI:5319065|PMID:22044588) RGD PMID:22044588 MGI:MGI:5319065 NCBI chr 4:159,635,145...159,654,108
Ensembl chr 4:159,635,153...159,654,063 		JBrowse link
G Tp53 tumor protein p53 ISO MGI:MGI:1857263 (MGI:MGI:5319065|PMID:22044588) RGD PMID:22044588 MGI:MGI:5319065 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 IMP RGD PMID:24896179 RGD:13208875 NCBI chr12:48,262,663...48,316,580
Ensembl chr12:48,262,658...48,316,722 		JBrowse link
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 ISO (MGI:MGI:5581539|PMID:24709290) RGD PMID:24709290 MGI:MGI:5581539 NCBI chr 4:113,883,671...113,886,833
Ensembl chr 4:113,883,670...113,886,994 		JBrowse link
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps13c vacuolar protein sorting 13 homolog C ISO
ISS		 (PMID:26942284)
GO_REF:0000024		 RGD
ParkinsonsUK-UCL		 PMID:26942284 GO_REF:0000024 NCBI chr 8:73,682,814...73,843,290
Ensembl chr 8:73,682,887...73,842,928 		JBrowse link
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 ISO UniProtKB:Q9JK66|UniProtKB:Q9Z2V5 (PMID:20457763) RGD PMID:20457763 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671 		JBrowse link
G Mfn2 mitofusin 2 ISO (MGI:MGI:5498413|PMID:23620051) RGD PMID:23620051 MGI:MGI:5498413 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145 		JBrowse link
G Optn optineurin IEA
ISO		 GO_REF:0000107
(PMID:25294927)		 Ensembl
RGD		 PMID:25294927 GO_REF:0000107 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:19029340) RGD PMID:19029340 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO (MGI:MGI:5298125|PMID:22020285) RGD PMID:22020285 MGI:MGI:5298125 NCBI chr12:11,433,815...11,526,465
Ensembl chr12:11,407,213...11,526,465 		JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 ISO (PMID:18006506) RGD PMID:18006506 NCBI chr 1:199,941,258...199,965,191
Ensembl chr 1:199,941,161...199,965,191 		JBrowse link
G Hspb8 heat shock protein family B (small) member 8 ISO (PMID:18006506) RGD PMID:18006506 NCBI chr12:45,905,371...45,920,014
Ensembl chr12:45,905,371...45,920,013 		JBrowse link
G Htt huntingtin IEA
ISO		 GO_REF:0000107
(PMID:25686248)		 Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 ISO
IEA		 (PMID:21072319)
GO_REF:0000107		 RGD
Ensembl		 PMID:21072319 GO_REF:0000107 NCBI chr 2:211,243,398...211,323,283
Ensembl chr 2:211,246,068...211,322,719 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:11,970,401...12,009,463
Ensembl chr 3:11,972,813...12,007,570 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha ISO (PMID:25578879) RGD PMID:25578879 NCBI chr17:85,533,056...85,748,843 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta ISO (PMID:25578879) RGD PMID:25578879 NCBI chr10:85,655,223...85,684,138
Ensembl chr10:85,658,324...85,684,138 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:70,483,948...70,498,995
Ensembl chr 7:70,483,942...70,498,995 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ISO
ISS
IEA		 (PMID:25495476)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 ISO
ISS
IEA		 (PMID:25495476)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr13:103,157,806...103,229,010
Ensembl chr13:103,157,806...103,228,423 		JBrowse link
G Ralb RAS like proto-oncogene B IEA
ISO		 GO_REF:0000107
(PMID:24056301)		 Ensembl
RGD		 PMID:24056301 GO_REF:0000107 NCBI chr13:35,494,716...35,531,503
Ensembl chr13:35,494,721...35,511,020 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 IEA
ISO		 GO_REF:0000107
(MGI:MGI:5634888|PMID:21068542)
(PMID:21068542)		 Ensembl
RGD		 PMID:21068542 GO_REF:0000107, MGI:MGI:5634888 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702 		JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:51,786,459...51,787,151 JBrowse link
G Adrb2 adrenoceptor beta 2 ISO
ISS
IEA		 (PMID:23708524)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23708524 GO_REF:0000024, GO_REF:0000107 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:83,935,087...83,963,750 JBrowse link
G Clec16a C-type lectin domain containing 16A ISO MGI:MGI:5648633 (MGI:MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:MGI:5603233 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 ISO
IBA		 (PMID:26468287)
PMID:21873635		 RGD PMID:26468287, PMID:21873635 RGD:13792537 NCBI chr 8:132,844,042...132,910,905
Ensembl chr 8:132,844,043...132,911,193 		JBrowse link
G Irgm immunity-related GTPase M ISO (PMID:16888103)
(MGI:MGI:3656111|PMID:16888103)		 RGD PMID:16888103 MGI:MGI:3656111 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:47,019,326...47,026,465
Ensembl chr10:47,018,974...47,026,465 		JBrowse link
positive regulation of lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 ISO
ISS
IEA		 (PMID:23708524)
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23708524 GO_REF:0000024, GO_REF:0000107 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834 		JBrowse link
G Htt huntingtin IEA
ISO		 GO_REF:0000107
(PMID:25686248)		 Ensembl
RGD		 PMID:25686248 GO_REF:0000107 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637 		JBrowse link
G Sesn2 sestrin 2 ISO MGI:MGI:3587950 (MGI:MGI:5444071|PMID:22958918) RGD PMID:22958918 MGI:MGI:5444071 NCBI chr 5:150,684,891...150,703,846
Ensembl chr 5:150,684,133...150,704,117 		JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566 		JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO (PMID:25332431) RGD PMID:25332431 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954 		JBrowse link
positive regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 ISO UniProtKB:O60238 (PMID:19273585) RGD PMID:19273585 NCBI chr 1:211,248,098...211,265,282
Ensembl chr 1:211,248,098...211,265,282 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like ISO UniProtKB:Q12983 (PMID:19273585) RGD PMID:19273585 NCBI chr15:43,643,897...43,667,123
Ensembl chr15:43,643,897...43,667,029 		JBrowse link
G Dcn decorin ISO UniProtKB:P35968 (PMID:23798385) RGD PMID:23798385 NCBI chr 7:38,742,250...38,782,282
Ensembl chr 7:38,742,051...38,782,323 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin ISO MGI:MGI:102548|MGI:MGI:2182627 (MGI:MGI:4457987|PMID:20453062)
(PMID:20453062)		 RGD PMID:20453062 MGI:MGI:4457987 NCBI chr 1:5,448,958...5,571,512
Ensembl chr 1:5,448,958...5,571,512 		JBrowse link
G Gnai3 G protein subunit alpha i3 ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 2:210,896,779...210,934,733
Ensembl chr 2:210,896,656...210,934,749 		JBrowse link
G Gpsm1 G-protein signaling modulator 1 ISO (PMID:12642577) RGD PMID:12642577 NCBI chr 3:3,767,394...3,794,360
Ensembl chr 3:3,767,394...3,794,359 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA		 MGI:MGI:2386679 (MGI:MGI:3847365|PMID:19273585)
GO_REF:0000107		 RGD
Ensembl		 PMID:19273585 GO_REF:0000107, MGI:MGI:3847365 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052 		JBrowse link
G Hmox1 heme oxygenase 1 ISO MGI:MGI:2429784 (MGI:MGI:5430482|PMID:20705711) RGD PMID:20705711 MGI:MGI:5430482 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma ISO (MGI:MGI:5819337|PMID:23778976) RGD PMID:23778976 MGI:MGI:5819337 NCBI chr  X:156,254,187...156,280,046
Ensembl chr  X:156,257,173...156,270,748 		JBrowse link
G Il4 interleukin 4 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:5702366|PMID:26416964)		 UniProt
RGD		 PMID:26416964, PMID:21873635 GO_REF:0000024, MGI:MGI:5702366, RGD:13792537 NCBI chr10:38,963,979...38,969,531
Ensembl chr10:38,963,979...38,969,531 		JBrowse link
G Kdr kinase insert domain receptor ISO
IEA		 UniProtKB:P07585 (PMID:23798385)
GO_REF:0000107		 RGD
Ensembl		 PMID:23798385 GO_REF:0000107 NCBI chr14:34,727,677...34,787,127
Ensembl chr14:34,727,623...34,787,183 		JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:22354037) RGD PMID:22354037 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 ISO (MGI:MGI:5819337|PMID:23778976) RGD PMID:23778976 MGI:MGI:5819337 NCBI chr 5:47,183,142...47,244,424
Ensembl chr 5:47,186,558...47,244,416 		JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 8:50,256,969...50,310,043
Ensembl chr 8:50,259,248...50,277,797 		JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase ISO (MGI:MGI:4361989|PMID:17476689) RGD PMID:17476689 MGI:MGI:4361989 NCBI chr  X:15,462,621...15,467,890
Ensembl chr  X:15,462,016...15,467,875 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO (PMID:20871098) RGD PMID:20871098 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Rab12 RAB12, member RAS oncogene family ISO (MGI:MGI:5574288|PMID:23357852) RGD PMID:23357852 MGI:MGI:5574288 NCBI chr 9:114,683,985...114,709,613
Ensembl chr 9:114,684,039...114,709,546 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 IEA
ISO
ISS		 GO_REF:0000107
UniProtKB:Q96DA2 (PMID:27103069), (PMID:27334615)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:27103069, PMID:27334615 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 ISO
IBA		 (PMID:26416964)
PMID:21873635		 RGD PMID:26416964, PMID:21873635 RGD:13792537 NCBI chr 9:81,401,080...81,422,016
Ensembl chr 9:81,402,124...81,421,990 		JBrowse link
G Scoc short coiled-coil protein ISO
ISS		 (PMID:22354037)
GO_REF:0000024		 RGD
GO_Central		 PMID:22354037 GO_REF:0000024 NCBI chr19:24,584,435...24,614,167
Ensembl chr19:24,584,455...24,614,019 		JBrowse link
G Sesn1 sestrin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:46,667,116...46,758,306
Ensembl chr20:46,667,121...46,758,305 		JBrowse link
G Sesn2 sestrin 2 ISO
IBA		 (PMID:23274085)
PMID:21873635		 RGD PMID:23274085, PMID:21873635 RGD:13792537 NCBI chr 5:150,684,891...150,703,846
Ensembl chr 5:150,684,133...150,704,117 		JBrowse link
G Sesn3 sestrin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:12,823,060...12,878,749
Ensembl chr 8:12,823,155...12,872,705 		JBrowse link
G Sirt1 sirtuin 1 ISO
IEA		 (PMID:18296641)
GO_REF:0000107
(MGI:MGI:3776699|PMID:18296641), (MGI:MGI:4940431|PMID:21189328)		 RGD
Ensembl		 PMID:18296641, PMID:21189328 GO_REF:0000107, MGI:MGI:3776699, MGI:MGI:4940431 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:6305034|PMID:30568238)
(PMID:30568238), (PMID:30842662)		 UniProt
RGD		 PMID:30568238, PMID:30842662, PMID:21873635 GO_REF:0000024, MGI:MGI:6305034, RGD:13792537 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 1:85,437,780...85,466,854
Ensembl chr 1:85,437,780...85,466,854 		JBrowse link
G Tbk1 TANK-binding kinase 1 ISO (PMID:27103069) RGD PMID:27103069 NCBI chr 7:63,655,247...63,687,978
Ensembl chr 7:63,655,247...63,687,978 		JBrowse link
G Trim13 tripartite motif-containing 13 ISO
IBA		 (PMID:22178386)
PMID:21873635		 RGD PMID:22178386, PMID:21873635 RGD:13792537 NCBI chr15:41,897,191...41,936,545
Ensembl chr15:41,927,241...41,935,718 		JBrowse link
G Tsc1 TSC complex subunit 1 IDA RGD PMID:23435171 RGD:10448950 NCBI chr 3:7,219,955...7,269,063
Ensembl chr 3:7,237,192...7,265,145 		JBrowse link
G Tsc2 TSC complex subunit 2 ISO
IEA		 UniProtKB:Q61037 (PMID:23778976)
(MGI:MGI:4457987|PMID:20453062), (MGI:MGI:5819337|PMID:23778976)
GO_REF:0000107		 RGD
Ensembl		 PMID:20453062, PMID:23778976 GO_REF:0000107, MGI:MGI:4457987, MGI:MGI:5819337 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil ISO (PMID:22354037) RGD PMID:22354037 NCBI chr17:60,887,606...60,946,630
Ensembl chr17:60,888,017...60,946,426 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase IMP RGD PMID:28608965 RGD:13432560 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Vdac1 voltage-dependent anion channel 1 ISO (PMID:32047033) RGD PMID:32047033 NCBI chr10:37,724,915...37,752,827
Ensembl chr10:37,724,915...37,752,826 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D ISO (PMID:29307555) RGD PMID:29307555 NCBI chr 5:162,891,451...163,119,239
Ensembl chr 5:162,891,451...163,119,239 		JBrowse link
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc37 cell division cycle 37, HSP90 cochaperone ISO
IEA		 (MGI:MGI:5607224|PMID:21855797)
GO_REF:0000107		 RGD
Ensembl		 PMID:21855797 GO_REF:0000107, MGI:MGI:5607224 NCBI chr 8:22,160,922...22,173,797
Ensembl chr 8:22,154,067...22,173,804 		JBrowse link
G Hdac6 histone deacetylase 6 ISO UniProtKB:Q9JK66 (MGI:MGI:5616310|PMID:20457763) RGD PMID:20457763 MGI:MGI:5616310 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 IEA
ISO		 GO_REF:0000107
(PMID:30217973)		 Ensembl
RGD		 PMID:30217973 GO_REF:0000107 NCBI chr  X:21,474,627...21,603,348
Ensembl chr  X:21,499,934...21,598,876 		JBrowse link
G Pink1 PTEN induced kinase 1 ISO (PMID:20871098) RGD PMID:20871098 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:20457763), (PMID:20871098), (PMID:23212910) RGD PMID:20457763, PMID:20871098, PMID:23212910 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 ISO (PMID:24270810) RGD PMID:24270810 NCBI chr 4:7,835,949...7,842,790
Ensembl chr 4:7,835,949...7,842,789 		JBrowse link
positive regulation of xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 ISO (PMID:23245322) RGD PMID:23245322 NCBI chr 3:11,970,401...12,009,463
Ensembl chr 3:11,972,813...12,007,570 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO MGI:MGI:1346858 (MGI:MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:MGI:5299952 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 ISO MGI:MGI:2674231 (MGI:MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:MGI:5299952 NCBI chr 4:85,123,965...85,175,206
Ensembl chr 4:85,123,960...85,174,951 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO MGI:MGI:3529594 (MGI:MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:MGI:5299952 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492 		JBrowse link
G Optn optineurin ISO
IEA		 (PMID:21617041)
GO_REF:0000107		 RGD
Ensembl		 PMID:21617041 GO_REF:0000107 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389 		JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 ISO MGI:MGI:2660793 (MGI:MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:MGI:5299952 NCBI chr 5:29,838,713...29,870,390
Ensembl chr 5:29,838,747...29,870,735 		JBrowse link
G Tbk1 TANK-binding kinase 1 ISO (MGI:MGI:5645201|PMID:21617041) RGD PMID:21617041 MGI:MGI:5645201 NCBI chr 7:63,655,247...63,687,978
Ensembl chr 7:63,655,247...63,687,978 		JBrowse link
G Tlr2 toll-like receptor 2 ISO MGI:MGI:2674036 (MGI:MGI:5299952|PMID:22033934) RGD PMID:22033934 MGI:MGI:5299952 NCBI chr 2:182,840,171...182,846,061
Ensembl chr 2:182,840,727...182,846,061 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 ISO (MGI:MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:MGI:5605433 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228 		JBrowse link
G Atg5 autophagy related 5 ISO
IEA		 (MGI:MGI:5543871|PMID:23918802)
GO_REF:0000107		 RGD
Ensembl		 PMID:23918802 GO_REF:0000107, MGI:MGI:5543871 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140 		JBrowse link
G Irgm immunity-related GTPase M ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:34,213,885...34,221,968
Ensembl chr10:34,213,936...34,221,928 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 ISO (MGI:MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:MGI:5605433 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg13 autophagy related 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,580,549...80,614,554
Ensembl chr 3:80,581,247...80,601,410 		JBrowse link
G Atg16l1 autophagy related 16-like 1 ISO PR:Q80W47 (MGI:MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:MGI:5605433 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228 		JBrowse link
G Atg9a autophagy related 9A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,382,800...82,393,429
Ensembl chr 9:82,382,800...82,393,382 		JBrowse link
G Atg9b autophagy related 9B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:7,314,369...7,322,095
Ensembl chr 4:7,314,369...7,321,029 		JBrowse link
G Mfn2 mitofusin 2 ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:137,824,136...137,889,144
Ensembl chr 6:137,824,213...137,887,418 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 ISO (MGI:MGI:5565574|PMID:24098492) RGD PMID:24098492 MGI:MGI:5565574 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895 		JBrowse link
G Stx17 syntaxin 17 ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:63,866,346...63,926,276
Ensembl chr 5:63,870,432...63,922,730 		JBrowse link
G Trappc8 trafficking protein particle complex 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:15,298,673...15,375,034
Ensembl chr18:15,298,978...15,375,031 		JBrowse link
G Wdr45 WD repeat domain 45 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:15,621,249...15,627,159
Ensembl chr  X:15,621,209...15,627,235 		JBrowse link
G Wdr45b WD repeat domain 45B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:110,523,843...110,555,769
Ensembl chr10:110,525,749...110,555,761 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:97,859,730...97,896,949
Ensembl chr10:97,859,727...97,896,525 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 ISO
ISS
IBA		 PR:Q8C0J2 (MGI:MGI:5605433|PMID:24954904)
(PMID:28561066)
GO_REF:0000024
PMID:21873635		 RGD
UniProt		 PMID:24954904, PMID:28561066, PMID:21873635 GO_REF:0000024, MGI:MGI:5605433, RGD:13792537 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006774.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:257,724,842...257,729,237 JBrowse link
G AABR07006775.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:257,747,175...257,749,708 JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:MGI:5527012 NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351 		JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:MGI:5527012 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924 		JBrowse link
G LOC100363782 RAB1B, member RAS oncogene family-like IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:220,480,834...220,491,469 JBrowse link
G LOC102555167 ras-related protein Rab-1B-like IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:220,480,828...220,491,456
Ensembl chr 1:220,480,834...220,491,469 		JBrowse link
G LOC685933 hypothetical protein LOC685933 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,828,474...257,885,689
Ensembl chr 1:257,517,242...257,883,971 		JBrowse link
G Mtmr3 myotubularin related protein 3 ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr14:84,701,559...84,820,487
Ensembl chr14:84,701,559...84,820,415 		JBrowse link
G Nprl2 NPR2-like, GATOR1 complex subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:116,297,950...116,301,123
Ensembl chr 8:116,297,950...116,301,122 		JBrowse link
G Nprl3 NPR3-like, GATOR1 complex subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:15,620,824...15,661,332
Ensembl chr10:15,620,871...15,661,331 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 9:71,911,744...72,005,816
Ensembl chr 9:71,915,421...72,005,838 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family IEA
ISO		 GO_REF:0000107
(PMID:20545908)		 Ensembl
RGD		 PMID:20545908 GO_REF:0000107 NCBI chr 1:220,483,529...220,491,469
Ensembl chr 1:220,480,834...220,491,469 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:27334615)		 Ensembl
UniProt
RGD		 PMID:27334615 GO_REF:0000024, GO_REF:0000107 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409 		JBrowse link
G Rnf5 ring finger protein 5 ISO MGI:MGI:3775796 (MGI:MGI:5469257|PMID:23093945) RGD PMID:23093945 MGI:MGI:5469257 NCBI chr20:4,366,244...4,368,690
Ensembl chr20:4,366,246...4,368,693 		JBrowse link
G Tbc1d12 TBC1 domain family, member 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,517,128...257,599,659
Ensembl chr 1:257,517,242...257,883,971 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 ISO
IBA
IEA		 (PMID:22613832)
PMID:21873635
GO_REF:0000107		 RGD
Ensembl		 PMID:22613832, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr14:79,172,272...79,438,765
Ensembl chr14:79,205,466...79,438,764 		JBrowse link
G Ubqln2 ubiquilin 2 ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:18,723,313...18,726,732
Ensembl chr  X:18,723,341...18,726,732 		JBrowse link
regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:5698740|PMID:26450516) RGD PMID:26450516 MGI:MGI:5698740 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
G Tbc1d25 TBC1 domain family, member 25 ISO
IBA		 (PMID:21383079)
PMID:21873635		 RGD PMID:21383079, PMID:21873635 RGD:13792537 NCBI chr  X:15,064,733...15,088,579
Ensembl chr  X:15,064,594...15,088,589 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 ISO
IMP		 (PMID:22186024) RGD PMID:22186024, PMID:22186024 RGD:13442482 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:6383362|PMID:25878248) RGD PMID:25878248 MGI:MGI:6383362 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664 		JBrowse link
regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:49,290,112...49,844,547 JBrowse link
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:22198378) RGD PMID:22198378 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637 		JBrowse link
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 ISO
IEA		 (PMID:22982048)
GO_REF:0000107		 RGD
Ensembl		 PMID:22982048 GO_REF:0000107 NCBI chr10:88,914,264...88,967,736
Ensembl chr10:88,914,276...88,967,748 		JBrowse link
G Hdac6 histone deacetylase 6 ISO (PMID:16192271) RGD PMID:16192271 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5619439|PMID:23332761)		 Ensembl
UniProt
RGD		 PMID:23332761 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5619439 NCBI chr 5:124,568,845...124,642,569
Ensembl chr 5:124,574,079...124,642,569 		JBrowse link
G Ubqln1 ubiquilin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:6,840,441...6,878,842
Ensembl chr17:6,840,463...6,878,844 		JBrowse link
G Ubqln2 ubiquilin 2 ISO
IBA		 (PMID:20529957)
PMID:21873635		 RGD PMID:20529957, PMID:21873635 RGD:13792537 NCBI chr  X:18,723,313...18,726,732
Ensembl chr  X:18,723,341...18,726,732 		JBrowse link
reticulophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,612,584...221,632,291
Ensembl chr 1:221,612,584...221,632,267 		JBrowse link
G Atg2b autophagy related 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:129,449,451...129,519,599
Ensembl chr 6:129,449,449...129,509,720 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 ISO
IEA		 (PMID:32160526)
GO_REF:0000107		 RGD
Ensembl		 PMID:32160526 GO_REF:0000107 NCBI chr 3:123,195,580...123,206,828
Ensembl chr 3:123,195,580...123,206,828 		JBrowse link
G LOC103689968 protein FAM134B ISS
IEA
IBA		 GO_REF:0000024
GO_REF:0000002
PMID:21873635		 GO_Central
InterPro		 PMID:21873635 GO_REF:0000002, GO_REF:0000024, RGD:13792537 NCBI chr 2:78,103,358...78,257,109
Ensembl chr 2:78,103,387...78,276,927 		JBrowse link
G LOC103690028 zinc finger protein 622 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:78,261,699...78,276,942
Ensembl chr 2:78,103,387...78,276,927 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 IBA
ISO		 PMID:21873635
MGI:MGI:2176173|MGI:MGI:3526069 (MGI:MGI:6323456|PMID:31006538)		 RGD PMID:31006538, PMID:21873635 MGI:MGI:6323456, RGD:13792537 NCBI chr 5:13,033,918...13,097,369
Ensembl chr 5:13,033,918...13,097,341 		JBrowse link
G Retreg1 reticulophagy regulator 1 ISO
IEA
IBA
ISS		 (PMID:26040720)
GO_REF:0000002
PMID:21873635
GO_REF:0000024
(MGI:MGI:5646045|PMID:26040720)		 RGD
InterPro
GO_Central		 PMID:26040720, PMID:21873635 GO_REF:0000002, GO_REF:0000024, MGI:MGI:5646045, RGD:13792537 NCBI chr 2:78,391,921...78,401,569
Ensembl chr 2:78,391,921...78,399,987 		JBrowse link
G Retreg3 reticulophagy regulator family member 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:89,006,595...89,030,595
Ensembl chr10:89,006,595...89,030,595 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISS
IBA
ISO		 GO_REF:0000024
PMID:21873635
(MGI:MGI:5925643|PMID:29056340)		 UniProt
RGD		 PMID:29056340, PMID:21873635 GO_REF:0000024, MGI:MGI:5925643, RGD:13792537 NCBI chr18:28,529,537...28,535,828
Ensembl chr18:28,529,576...28,535,828 		JBrowse link
G Tex264 testis expressed 264 ISO (PMID:31006537), (PMID:31006538) RGD PMID:31006537, PMID:31006538 NCBI chr 8:115,360,706...115,388,299
Ensembl chr 8:115,360,713...115,388,266 		JBrowse link
G Uba5 ubiquitin-like modifier activating enzyme 5 ISO
ISS		 (PMID:32160526)
GO_REF:0000024		 RGD
UniProt		 PMID:32160526 GO_REF:0000024 NCBI chr 8:112,578,607...112,594,192
Ensembl chr 8:112,578,590...112,594,261 		JBrowse link
G Ufc1 ubiquitin-fold modifier conjugating enzyme 1 ISO
ISS		 (PMID:32160526)
GO_REF:0000024		 RGD
UniProt		 PMID:32160526 GO_REF:0000024 NCBI chr13:89,661,763...89,668,513
Ensembl chr13:89,661,763...89,668,473 		JBrowse link
G Ufl1 Ufm1-specific ligase 1 ISO
ISS		 (PMID:32160526)
GO_REF:0000024		 RGD
UniProt		 PMID:32160526 GO_REF:0000024 NCBI chr 5:39,616,479...39,650,894
Ensembl chr 5:39,615,956...39,650,895 		JBrowse link
G Ufm1 ubiquitin-fold modifier 1 ISO
ISS		 (PMID:32160526)
GO_REF:0000024		 RGD
UniProt		 PMID:32160526 GO_REF:0000024 NCBI chr 2:143,096,268...143,104,412
Ensembl chr 2:143,096,271...143,104,412 		JBrowse link
selective autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sqstm1 sequestosome 1 ISS
ISO		 GO_REF:0000024
(PMID:22622177)		 UniProt
RGD		 PMID:22622177 GO_REF:0000024 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:11,433,815...11,526,465
Ensembl chr12:11,407,213...11,526,465 		JBrowse link
xenophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025818.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:51,786,459...51,787,151 JBrowse link
G Atg16l1 autophagy related 16-like 1 ISO PR:Q80W47 (MGI:MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:MGI:5605433 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228 		JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:83,935,087...83,963,750 JBrowse link
G Lgals8 galectin 8 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:22246324), (PMID:28077878)		 GO_Central
Ensembl
RGD		 PMID:22246324, PMID:28077878 GO_REF:0000024, GO_REF:0000107 NCBI chr17:66,487,451...66,515,316
Ensembl chr17:66,487,457...66,511,870 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 ISO PR:Q8C0J2 (MGI:MGI:5605433|PMID:24954904) RGD PMID:24954904 MGI:MGI:5605433 NCBI chr12:13,969,704...13,998,134
Ensembl chr12:13,969,586...13,998,172 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      process utilizing autophagic mechanism 464
        autophagy 464
          macroautophagy 225
            amphisome-lysosome fusion 0
            autophagosome maturation + 40
            autophagosome organization + 108
            autophagosome-endosome fusion 1
            autophagosome-lysosome fusion 3
            negative regulation of macroautophagy + 32
            positive regulation of macroautophagy + 70
            regulation of macroautophagy + 118
            selective autophagy + 67
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      catabolic process 2543
        cellular catabolic process 2170
          autophagy 464
            macroautophagy 225
              amphisome-lysosome fusion 0
              autophagosome maturation + 40
              autophagosome organization + 108
              autophagosome-endosome fusion 1
              autophagosome-lysosome fusion 3
              negative regulation of macroautophagy + 32
              positive regulation of macroautophagy + 70
              regulation of macroautophagy + 118
              selective autophagy + 67
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.