Vti1b (vesicle transport through interaction with t-SNAREs 1B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Vti1b (vesicle transport through interaction with t-SNAREs 1B) Rattus norvegicus
Analyze
Symbol: Vti1b
Name: vesicle transport through interaction with t-SNAREs 1B
RGD ID: 2323682
Description: Predicted to enable SNAP receptor activity; SNARE binding activity; and chloride channel inhibitor activity. Predicted to be involved in several processes, including Golgi vesicle transport; regulation of protein localization to plasma membrane; and retrograde transport, endosome to Golgi. Located in neuronal cell body and synaptic vesicle. Part of SNARE complex. Is active in presynaptic endosome membrane. Orthologous to human VTI1B (vesicle transport through interaction with t-SNAREs 1B); INTERACTS WITH 4,4'-sulfonyldiphenol; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100359512; LOC366673; RGD1560475; similar to vesicle transport through interaction with t-SNAREs 1B homolog; vesicle transport through interaction with t-SNAREs 1B-like; Vesicle transport through interaction with t-SNAREs homolog 1B; Vesicle transport v-SNARE protein Vti1-like 1; Vti1-rp1; Vti1l1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,694,342 - 103,709,544 (-)NCBIGRCr8
mRatBN7.2697,957,700 - 97,976,491 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,961,346 - 97,976,465 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,392,592 - 98,405,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,691,744 - 98,705,104 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0698,077,883 - 98,091,234 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,340,261 - 102,353,612 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,339,857 - 102,353,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,026,935 - 115,040,283 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,928,449 - 101,943,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera696,346,498 - 96,361,515 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The SNARE Vti1a-beta is localized to small synaptic vesicles and participates in a novel SNARE complex. Antonin W, etal., J Neurosci 2000 Aug 1;20(15):5724-32.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
4. Combinatorial SNARE complexes with VAMP7 or VAMP8 define different late endocytic fusion events. Pryor PR, etal., EMBO Rep. 2004 Jun;5(6):590-5. Epub 2004 May 7.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11101518   PMID:11784862   PMID:18033301   PMID:18321981   PMID:18570918   PMID:19224922   PMID:23217709   PMID:24550300   PMID:29437892  


Genomics

Comparative Map Data
Vti1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,694,342 - 103,709,544 (-)NCBIGRCr8
mRatBN7.2697,957,700 - 97,976,491 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,961,346 - 97,976,465 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,392,592 - 98,405,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,691,744 - 98,705,104 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0698,077,883 - 98,091,234 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,340,261 - 102,353,612 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,339,857 - 102,353,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,026,935 - 115,040,283 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,928,449 - 101,943,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera696,346,498 - 96,361,515 (-)NCBICelera
Cytogenetic Map6q24NCBI
VTI1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381467,647,085 - 67,674,632 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1467,647,085 - 67,674,820 (-)EnsemblGRCh38hg38GRCh38
GRCh371468,113,802 - 68,141,349 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361467,187,619 - 67,211,301 (-)NCBINCBI36Build 36hg18NCBI36
Build 341467,187,618 - 67,211,301NCBI
Celera1448,176,927 - 48,200,645 (-)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1448,287,563 - 48,311,281 (-)NCBIHuRef
CHM1_11468,056,646 - 68,080,381 (-)NCBICHM1_1
T2T-CHM13v2.01461,854,218 - 61,881,753 (-)NCBIT2T-CHM13v2.0
Vti1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391279,202,791 - 79,219,428 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1279,202,791 - 79,219,441 (-)EnsemblGRCm39 Ensembl
GRCm381279,156,017 - 79,172,685 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1279,156,017 - 79,172,667 (-)EnsemblGRCm38mm10GRCm38
MGSCv371280,257,004 - 80,273,445 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361280,075,098 - 80,091,217 (-)NCBIMGSCv36mm8
Celera1280,620,461 - 80,636,902 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
Vti1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,527,753 - 2,549,568 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554662,527,750 - 2,549,599 (+)NCBIChiLan1.0ChiLan1.0
VTI1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21568,761,673 - 68,786,707 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11467,978,185 - 68,001,944 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01448,227,203 - 48,254,990 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11467,105,160 - 67,134,351 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1467,105,160 - 67,134,351 (-)Ensemblpanpan1.1panPan2
VTI1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1841,619,365 - 41,650,389 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2919,153,616 - 19,154,245 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl841,614,921 - 41,669,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha841,312,675 - 41,341,742 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0841,848,085 - 41,879,357 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl841,829,333 - 41,879,799 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1841,467,045 - 41,496,369 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0841,540,458 - 41,569,783 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0841,900,036 - 41,929,107 (-)NCBIUU_Cfam_GSD_1.0
Vti1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864063,127,656 - 63,147,822 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649511,045,429 - 11,064,206 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649511,043,813 - 11,064,113 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VTI1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,374,640 - 91,413,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,386,020 - 91,413,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,693,164 - 97,720,791 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VTI1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12444,884,082 - 44,907,819 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2444,884,315 - 44,907,771 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605333,110,909 - 33,137,704 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vti1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473433,299,373 - 33,321,199 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473433,299,732 - 33,341,672 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat

Markers in Region
BF386764  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.46101,928,292 - 101,928,470UniSTSRGSC3.4
Celera696,346,541 - 96,346,719UniSTS
RH 3.4 Map6691.09UniSTS
Cytogenetic Map6q24UniSTS
RH138374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2697,966,682 - 97,966,844 (+)MAPPERmRatBN7.2
Rnor_6.06102,343,805 - 102,343,966NCBIRnor6.0
Rnor_5.06115,030,479 - 115,030,640UniSTSRnor5.0
RGSC_v3.46101,933,737 - 101,933,898UniSTSRGSC3.4
Celera696,351,700 - 96,351,861UniSTS
RH 3.4 Map6691.6UniSTS
RH141711  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2697,961,023 - 97,961,210 (+)MAPPERmRatBN7.2
Rnor_6.06102,338,051 - 102,338,237NCBIRnor6.0
Rnor_5.06115,024,945 - 115,025,131UniSTSRnor5.0
RGSC_v3.46101,927,927 - 101,928,113UniSTSRGSC3.4
Celera696,346,176 - 96,346,362UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000090407   ⟹   ENSRNOP00000070613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl697,961,346 - 97,976,300 (-)Ensembl
Rnor_6.0 Ensembl6102,339,857 - 102,353,403 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094096   ⟹   ENSRNOP00000091587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl697,963,953 - 97,976,465 (-)Ensembl
RefSeq Acc Id: NM_001377194   ⟹   NP_001364123
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,696,135 - 103,709,487 (-)NCBI
mRatBN7.2697,963,140 - 97,976,491 (-)NCBI
RefSeq Acc Id: XM_039111590   ⟹   XP_038967518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,694,342 - 103,709,544 (-)NCBI
mRatBN7.2697,957,700 - 97,976,486 (-)NCBI
RefSeq Acc Id: XM_039111591   ⟹   XP_038967519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,694,342 - 103,709,468 (-)NCBI
mRatBN7.2697,957,700 - 97,976,484 (-)NCBI
RefSeq Acc Id: XM_039111592   ⟹   XP_038967520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,694,342 - 103,709,471 (-)NCBI
mRatBN7.2697,961,346 - 97,976,488 (-)NCBI
Ensembl Acc Id: ENSRNOP00000070613   ⟸   ENSRNOT00000090407
RefSeq Acc Id: XP_038967518   ⟸   XM_039111590
- Peptide Label: isoform X1
- UniProtKB: P58200 (UniProtKB/Swiss-Prot),   A6HCG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967519   ⟸   XM_039111591
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038967520   ⟸   XM_039111592
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001364123   ⟸   NM_001377194
- UniProtKB: F1LNC4 (UniProtKB/TrEMBL),   A0A8I6GJ34 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091587   ⟸   ENSRNOT00000094096
Protein Domains
t-SNARE coiled-coil homology   Vesicle transport v-SNARE N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P58200-F1-model_v2 AlphaFold P58200 1-232 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694695
Promoter ID:EPDNEW_R5216
Type:multiple initiation site
Name:Vti1b_1
Description:vesicle transport through interaction with t-SNAREs 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06102,353,411 - 102,353,471EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323682 AgrOrtholog
BioCyc Gene G2FUF-36972 BioCyc
Ensembl Genes ENSRNOG00000060436 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019090 UniProtKB/Swiss-Prot
  ENSRNOG00060028667 UniProtKB/Swiss-Prot
  ENSRNOG00065018186 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000090407 UniProtKB/TrEMBL
  ENSRNOT00000090407.2 UniProtKB/Swiss-Prot
  ENSRNOT00000094096.1 UniProtKB/TrEMBL
  ENSRNOT00055032574 UniProtKB/Swiss-Prot
  ENSRNOT00060049861 UniProtKB/Swiss-Prot
  ENSRNOT00065030499 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.400 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GOSR2/Membrin/Bos1 UniProtKB/Swiss-Prot
  SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  v-SNARE_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vesicle_trsprt_v-SNARE_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 100359512 ENTREZGENE
PANTHER VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG 1B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-SNARE_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vti1b PhenoGen
PIRSF Membrin-2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000060436 RatGTEx
  ENSRNOG00055019090 RatGTEx
  ENSRNOG00060028667 RatGTEx
  ENSRNOG00065018186 RatGTEx
SMART t_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GJ34 ENTREZGENE, UniProtKB/TrEMBL
  A6HCG5 ENTREZGENE, UniProtKB/TrEMBL
  F1LNC4 ENTREZGENE, UniProtKB/TrEMBL
  P58200 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-13 Vti1b  vesicle transport through interaction with t-SNAREs 1B  RGD1560475  similar to vesicle transport through interaction with t-SNAREs 1B homolog  Data merged from RGD:1560475 737654 APPROVED
2015-11-13 Vti1b  vesicle transport through interaction with t-SNAREs 1B  Vti1b  vesicle transport through interaction with t-SNAREs 1B  Type changed (type changed from [null] to [protein-coding]) 629549 APPROVED
2013-08-01 Vti1b  vesicle transport through interaction with t-SNAREs 1B  LOC100359512  vesicle transport through interaction with t-SNAREs 1B-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100359512  vesicle transport through interaction with t-SNAREs 1B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1560475  similar to vesicle transport through interaction with t-SNAREs 1B homolog   RGD1560475_predicted  similar to vesicle transport through interaction with t-SNAREs 1B homolog (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560475_predicted  similar to vesicle transport through interaction with t-SNAREs 1B homolog (predicted)  LOC366673  similar to vesicle transport through interaction with t-SNAREs 1B homolog  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC366673  similar to vesicle transport through interaction with t-SNAREs 1B homolog      Symbol and Name status set to provisional 70820 PROVISIONAL