Mcsm1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Mcsm1 (Mammary carcinoma susceptibility modifier QTL 1) Rattus norvegicus

Symbol: Mcsm1
Name: Mammary carcinoma susceptibility modifier QTL 1
RGD ID: 70176
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2658,632,962 - 103,632,962RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0662,263,348 - 107,263,348RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0671,775,541 - 116,775,541RGDRnor5.0
RGSC_v3.4661,787,263 - 106,787,263RGDRGSC3.4
RGSC_v3.1661,790,719 - 106,790,719RGD
Cross Type: Not Available
Strains Crossed: WKY/NHsd WF/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
WF/NHsd  (IEA)
WKY/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic loci controlling breast cancer susceptibility in the Wistar-Kyoto rat. Lan H, etal., Genetics 2001 Jan;157(1):331-9.
2. QTL Data Transfer QTL data import from the RatMap database

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3664Srsf5serine and arginine rich splicing factor 56100605165100610192Rat
3596Rps29ribosomal protein S2968763522987636627Rat
69194Gphngephyrin69695436597483617Rat
2619Foxg1forkhead box G166667479766677611Rat
2807Foxa1forkhead box A167509990775136534Rat
61844Psma3proteasome 20S subunit alpha 368948374189503775Rat
61849Psma6proteasome 20S subunit alpha 667276553472796554Rat
70907Actn1actinin, alpha 169899855399093334Rat
3209Nrcamneuronal cell adhesion molecule66140281361698536Rat
3762Sstr1somatostatin receptor 167583229275836806Rat
62009Zfp36l1zinc finger protein 36, C3H type-like 169893070598935748Rat
3171NfkbiaNFKB inhibitor alpha67285871372861941Rat
727829Sgpp1sphingosine-1-phosphate phosphatase 169442533994446534Rat
727844Gpr135G protein-coupled receptor 13569062753390630661Rat
621827Strn3striatin 366904777669134102Rat
621345Nova1NOVA alternative splicing regulator 166378010563905567Rat
2582Esr2estrogen receptor 269485843894909630Rat
620906Six1SIX homeobox 169174673991751975Rat
621279Arf6ADP-ribosylation factor 668785374287854890Rat
621417Kcnh5potassium voltage-gated channel subfamily H member 569361517493908107Rat
620664Hspa2heat shock protein family A (Hsp70) member 269512850495131281Rat
727780Gpx2glutathione peroxidase 269549358995496877Rat
621540Trim9tripartite motif-containing 968875682488856588Rat
69400Synj2bpsynaptojanin 2 binding protein6101189714101227400Rat
61928Hif1ahypoxia inducible factor 1 subunit alpha69262405992669262Rat
620098Mgat2alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase68765636087658849Rat
620119Fntbfarnesyltransferase, CAAX box, beta69553654095619587Rat
621656Timm9translocase of inner mitochondrial membrane 968961009489622924Rat
621390Srp54asignal recognition particle 54A67258758472626878Rat
3425Psen1presenilin 16103323052103375088Rat
620963Eif2s1eukaryotic translation initiation factor 2 subunit alpha69767282997697499Rat
621156Rpl36al1ribosomal protein L36A like 168765480887656202Rat
628874Mnat1MNAT1 component of CDK activating kinase69181470391971945Rat
621101MaxMYC associated factor X69563685995662204Rat
621055Acot2acyl-CoA thioesterase 26103611738103619404Rat
1304671Snapc1small nuclear RNA activating complex, polypeptide 169268478592710772Rat
620107NumbNUMB, endocytic adaptor protein6103431400103553422Rat
1303145Abhd12babhydrolase domain containing 12B68866862788696435Rat
71019Egln3egl-9 family hypoxia-inducible factor 367165029771675766Rat
620197Slc8a3solute carrier family 8 member A36100874359101007989Rat
708531Mthfd1methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 169497786295045375Rat
3681Slc10a1solute carrier family 10 member 16100613045100626670Rat
3070Dnajb9DnaJ heat shock protein family (Hsp40) member B966127038561276795Rat
621444Slc25a21solute carrier family 25 member 2167420343974702902Rat
727810Frmd6FERM domain containing 668934598389419579Rat
735076Zbtb25zinc finger and BTB domain containing 2569507069995095888Rat
621470Adam4a disintegrin and metalloprotease domain 46101123284101125730Rat
620964Prkd1protein kinase D166772519368039002Rat
735172Rab15RAB15, member RAS oncogene family69549958495524073Rat
621888Prkchprotein kinase C, eta69229200092490663Rat
620687Pyglglycogen phosphorylase L68869759888740260Rat
708497Sipa1l1signal-induced proliferation-associated 1 like 16101839351102118408Rat
620829Akap5A-kinase anchoring protein 569505152795061075Rat
620842Gemin2gem (nuclear organelle) associated protein 267670642476721154Rat
619828Scfd1sec1 family domain containing 166879581068874076Rat
1306830Gpr33-ps1G protein-coupled receptor 33, pseudogene 166947443569475440Rat
620435Sos2SOS Ras/Rho guanine nucleotide exchange factor 268804296688156140Rat
1304647Snx6sorting nexin 667223095072274157Rat
735131Mdga2MAM domain containing glycosylphosphatidylinositol anchor 268474642285608640Rat
3866Nkx2-1NK2 homeobox 167399660174001483Rat
1307232NubplNUBP iron-sulfur cluster assembly factor like66955927869781254Rat
1305116Churc1churchill domain containing 169546448895485208Rat
1305119Daam1dishevelled associated activator of morphogenesis 169038954490550114Rat
1305913Rpl10l1ribosomal protein L10 like 168454477184545791Rat
1304992Fkbp3FKBP prolyl isomerase 368311388583125500Rat
1305089Prorpprotein only RNase P catalytic subunit67266965972762419Rat
1303095Zbtb1zinc finger and BTB domain containing 169509683895125811Rat
1303096Fut8fucosyltransferase 869594924696176677Rat
620642Ralgapa1Ral GTPase activating protein catalytic subunit alpha 167297743273252378Rat
1306117Stxbp6syntaxin binding protein 666192075662157405Rat
1306726Six4SIX homeobox 469180232891816002Rat
1307897FancmFA complementation group M68312690383180455Rat
1305721L3hypdhtrans-L-3-hydroxyproline dehydratase69063631090647106Rat
1305080Cdkl1cyclin dependent kinase like 168822415488273434Rat
1305657Ppp2r5eprotein phosphatase 2 regulatory subunit B', epsilon69416884694317872Rat
1307442Arid4aAT-rich interaction domain 4A68952245989593868Rat
1307253Sav1salvador family WW domain containing protein 168847853688500121Rat
1303126Smoc1SPARC related modular calcium binding 16100701330100897441Rat
2151Arg2arginase 269793600297961379Rat
69412Akap6A-kinase anchoring protein 667018410170624369Rat
620986Rtn1reticulon 169076321290983436Rat
1306310MbipMAP3K12 binding inhibitory protein 167380813373825394Rat
1304624RGD1304624similar to RIKEN cDNA 2700097O0967254216672587511Rat
1307393Wdr89WD repeat domain 8969435046894382085Rat
1306982Cfl2cofilin 267235566472359709Rat
1307621RGD1307621hypothetical LOC31416868296530482973942Rat
1306115Pcnx1pecanex 16101565461101702339Rat
3569Rgs6regulator of G-protein signaling 66102264451102796311Rat
1306006Brms1lBRMS1 like transcriptional repressor67326667373300630Rat
1307795Zfyve1zinc finger FYVE-type containing 16103184938103234111Rat
735119Atp6v1dATPase H+ transporting V1 subunit D69765672597672295Rat
1311087Exd2exonuclease 3'-5' domain containing 26100116867100150452Rat
1310202Galnt16polypeptide N-acetylgalactosaminyltransferase 166100168943100250718Rat
1311990Ap4s1adaptor related protein complex 4 subunit sigma 166913340369174488Rat
1308507Arhgap5Rho GTPase activating protein 566997590470039299Rat
1309138Dtd2D-aminoacyl-tRNA deacylase 266945014669456430Rat
1560556Ttc6tetratricopeptide repeat domain 667513682775368176Rat
1310462Rdh12retinol dehydrogenase 1269801546598028388Rat
3373Ppm1aprotein phosphatase, Mg2+/Mn2+ dependent, 1A69143909491486139Rat
1559639RGD1559639similar to ribosomal protein L10a68734960487350328Rat
1559724RGD1559724similar to 40S ribosomal protein S1967206650372072009Rat
1311326Klhl28kelch-like family member 2868298736083018971Rat
1561024Mphosph6-ps2M phase phosphoprotein 6, pseudogene 269929722399298400Rat
1310330Slc38a6solute carrier family 38, member 669198765292076416Rat
1359208Dmac2ldistal membrane arm assembly component 2 like68820558088223934Rat
1311962Pole2DNA polymerase epsilon 2, accessory subunit68767470287712723Rat
1312001Rdh11retinol dehydrogenase 1169797937797995252Rat
1311438Pighphosphatidylinositol glycan anchor biosynthesis, class H69787490397897188Rat
1308362Plekhh1pleckstrin homology, MyTH4 and FERM domain containing H169783928897888712Rat
1309051Ppp1r36protein phosphatase 1, regulatory subunit 3669513852695159102Rat
1309052Dpf3double PHD fingers 36102841403103125558Rat
1310474Togaram1TOG array regulator of axonemal microtubules 168301902583083343Rat
1310476Mphosph6-ps1M phase phosphoprotein 6, pseudogene69932107199322114Rat
1560681Rad51bRAD51 paralog B69809652598640988Rat
1311444Pnpla8patatin-like phospholipase domain containing 866132981061391736Rat
1310629Nkx2-8NK2 homeobox 867408627474087977Rat
1306504Klhdc2kelch domain containing 268777718387791609Rat
1310263G2e3G2/M-phase specific E3 ubiquitin protein ligase66876384768795305Rat
1307820Zfyve26zinc finger FYVE-type containing 2669803187498095538Rat
1310528Rhojras homolog family member J69403530794117642Rat
1306515Actr10actin related protein 1068944614189472350Rat
1306199Baz1abromodomain adjacent to zinc finger domain, 1A67238970172512516Rat
1308732Tmem30btransmembrane protein 30B69225162692254702Rat
1308005Tigar-ps1TP53 induced glycolysis regulatory phosphatase, pseudogene 168750952187511891Rat
1307543Fbxo33F-box protein 3367690061976934232Rat
1306535Dcaf5DDB1 and CUL4 associated factor 569917150699260183Rat
1306232Clec14aC-type lectin domain containing 14A67588147075884612Rat
1306241Dcaf4DDB1 and CUL4 associated factor 46103154847103180992Rat
1308036Dhrs7l1dehydrogenase/reductase (SDR family) member 7-like 169128920091312010Rat
1306250L2hgdhL-2-hydroxyglutarate dehydrogenase68816442988205585Rat
1309207Ppp2r3cprotein phosphatase 2, regulatory subunit B'', gamma67264702572670885Rat
1306949Insm2INSM transcriptional repressor 267297386172976453Rat
1308702Prpf39pre-mRNA processing factor 3968308898183113826Rat
1308536Cochcochlin66903113969045124Rat
1306567Trmt5tRNA methyltransferase 569196355891987660Rat
1308755Rbm25RNA binding motif protein 256103271775103319090Rat
1309624EappE2F-associated phosphoprotein67216648672194357Rat
1306492Ninninein68852540588627710Rat
1308089Plekhg3pleckstrin homology and RhoGEF domain containing G369526575695308952Rat
1309103Sec23aSec23 homolog A, COPII coat complex component67665879376706125Rat
1307181Npas3neuronal PAS domain protein 367070277371527928Rat
1309357Lrfn5leucine rich repeat and fibronectin type III domain containing 567946640379822821Rat
1310311Dnaaf2dynein, axonemal, assembly factor 268766110187670267Rat
1305786Plek2pleckstrin 269770012397719417Rat
1310296Med6mediator complex subunit 66101270410101283929Rat
1308211Klhdc1kelch domain containing 168767018287765431Rat
1307704Riox1ribosomal oxygenase 16103579642103582260Rat
1308455Tmx1thioredoxin-related transmembrane protein 168896069188971744Rat
1308917JkampJNK1/MAPK8-associated membrane protein69064804390661985Rat
1308071Pals1protein associated with LIN7 1, MAGUK p55 family member69754813397654163Rat
1309325Trappc6btrafficking protein particle complex subunit 6B67674089876752035Rat
1305248Syne2spectrin repeat containing nuclear envelope protein 269453708894848085Rat
1562299RGD1562299similar to taube nuss69929390799295840Rat
1563850Akr1b8-ps2aldo-keto reductase family 1, member B8, pseudogene 267756972077571967Rat
1562028Map4k5mitogen-activated protein kinase kinase kinase kinase 568828408788377118Rat
1559629RGD1559629similar to H+ ATP synthase66665418766654763Rat
1359636LOC314140ribose-phosphate pyrophosphokinase I -like67475533174763493Rat
1559545RGD1559545similar to ATPase inhibitory factor 168982191689842882Rat
1559921RGD1559921similar to Macrophage migration inhibitory factor (MIF) (Delayed early response protein 6)69926996299270606Rat
1565752RGD1565752similar to RIKEN cDNA 1700025B1669931721899318129Rat
1562540Ccdc196coiled-coil domain containing 19669691396096939415Rat
1311236Slc39a9solute carrier family 39, member 96100291537100330419Rat
1565002Dhrs7dehydrogenase/reductase 769133225991347856Rat
1562149Map3k9mitogen-activated protein kinase kinase kinase 96101423754101488822Rat
1560894Ccdc175coiled-coil domain containing 17569066194890745015Rat
1564008Dact1dishevelled-binding antagonist of beta-catenin 168979067689818254Rat
1561653Hectd1HECT domain E3 ubiquitin protein ligase 166918142969268045Rat
1565716Lrrc9leucine rich repeat containing 969101773991095847Rat
1559456Six6os1Six6 opposite strand transcript 169157918591615183Rat
1311176Paplnpapilin, proteoglycan-like sulfated glycoprotein6103398166103432199Rat
1310497Six6SIX homeobox 669163456891639548Rat
1562381RGD1562381similar to ribosomal protein S1769523656595237253Rat
1359232Atl1atlastin GTPase 168837716888475242Rat
1560824RGD1560824similar to Phospholipase A2 precursor (Phosphatidylcholine 2-acylhydrolase)6100679993100680397Rat
1561115Ccdc177coiled-coil domain containing 1776100404526100411112Rat
1561116Heatr5aHEAT repeat containing 5A66932186969419861Rat
1334065Or5ak28-ps1olfactory receptor family 5 subfamily AK member 28, pseudogene 166621392966214582Rat
1303243Sptbspectrin, beta, erythrocytic69531034295437221Rat
1560838Pax9paired box 967418674974203508Rat
1560347Tex21testis expressed 2169493138894969409Rat
1359133Aldoart2aldolase 1 A retrogene 267293982172941511Rat
1359264Gphb5glycoprotein hormone subunit beta 569412996894134585Rat
1586428Eif4a1-ps8eukaryotic translation initiation factor 4A1, pseudogene 867662386676625179Rat
1586488Ddx21-ps10DExD-box helicase 21, pseudogene 1067639943576400992Rat
1582892Pcnx4pecanex 469112506391170423Rat
1583855Gapdh-ps92Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9266186594961866939Rat
1586460Mrto4-ps8mRNA turnover 4, ribosome maturation factor, pseudogene 867660827276609088Rat
1583553Dnajb6-ps4DnaJ heat shock protein family (Hsp40) member B6, pseudogene 466129754961299049Rat
1566112Plekhd1pleckstrin homology and coiled-coil domain containing D16100340655100371942Rat
1565985Ttc9tetratricopeptide repeat domain 96101333274101368110Rat
1561721Fscbfibrous sheath CABYR binding protein68252784982530641Rat
1566220Heatr4HEAT repeat containing 46103574360103611578Rat
1582948Sec13-ps3SEC13 homolog, nuclear pore and COPII coat complex component, pseudogene 367890155878903012Rat
1565821Sptssaserine palmitoyltransferase, small subunit A67214471472156130Rat
1559672Timm23btranslocase of inner mitochondrial membrane 23B67184524471846339Rat
1562622Tmem229btransmembrane protein 229B69777164597819582Rat
1582926LOC688981similar to 60S ribosomal protein L26 (Silica-induced gene 20 protein) (SIG-20)69201780192018276Rat
1582931Pcbp2-ps9poly(rC) binding protein 2, pseudogene 967916269279163639Rat
1564654Syt16synaptotagmin 1669272141592972140Rat
1564393Garin2golgi associated RAB2 interactor family member 269748956297534729Rat
1589745Ndufa10l1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 165987981959881252Rat
1586354Snx7-ps1sorting nexin 7, pseudogene 168893116388934114Rat
1593648Bckdk-ps1branched chain ketoacid dehydrogenase kinase, pseudogene 169792618297927900Rat
1587342Ak2-ps1adenylate kinase 2, pseudogene 169701025497011724Rat
1586305Tomm20ltranslocase of outer mitochondrial membrane 20 like68959401689612070Rat
1588546Cyp51a1-ps1cytochrome P450, family 51, subfamily a, polypeptide 1, pseudogene 167672542176727572Rat
1586499G3bp1-ps7G3BP stress granule assembly factor 1, pseudogene 767629770776301640Rat
1587060Ube2i-ps3ubiquitin-conjugating enzyme E2I, pseudogene 366880406168805440Rat
1589026Lrr1leucine rich repeat protein 168764319587651894Rat
1587663Ldha-ps17lactate dehydrogenase A, pseudogene 1767572705975728506Rat
1585176LOC690035similar to Protein KIAA058668962271189725951Rat
1560665Timm17al1translocase of inner mitochondrial membrane 17a-like 167963705479637877Rat
1582962Apoo-ps1apolipoprotein O, pseudogene 167885871878859404Rat
1597353LOC690335similar to 60S ribosomal protein L23a69170727191707812Rat
1593470Gemin8-ps8gem (nuclear organelle) associated protein 8, pseudogene 868427366484274511Rat
1597397Cct6a-ps11chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 1168044267280487379Rat
1598344Pcna-ps1proliferating cell nuclear antigen, pseudogene 167779210877793917Rat
1597086Pnnpinin, desmosome associated protein67675813876766451Rat
1595528Susd6sushi domain containing 66100437834100531621Rat
1596109Eif2d-ps2eukaryotic translation initiation factor 2D, pseudogene 268286678382868664Rat
1595110Cers5-ps1ceramide synthase 5, pseudogene 166982385169830063Rat
1592352LOC689408similar to H2A histone family, member V isoform 168432180184322513Rat
1592266Rpl11-ps10ribosomal protein L11, pseudogene 1068621246286220022Rat
1595409ErhERH, mRNA splicing and mitosis factor6100280933100291200Rat
1593640LOC688022similar to ATP synthase D chain, mitochondrial69869672698697181Rat
1597022Adam4l1a disintegrin and metallopeptidase domain 4-like 16101071648101074111Rat
1597025Smarce1-ps5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 568852027888524964Rat
1597303Rpl31-ps9ribosomal protein L31, pseudogene 969179053891790875Rat
1594757Mis18bp1MIS18 binding protein 168318249783231978Rat
1594186Adtrp-ps1androgen-dependent TFPI-regulating protein, pseudogene 169799537297998563Rat
1598268Nt5c2-ps45'-nucleotidase, cytosolic II, pseudogene 467787813777879911Rat
1598269Paics-ps4phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 467768566177687084Rat
1597693Dnajc17-ps2DnaJ heat shock protein family (Hsp40) member C17, pseudogene 26100030088100030817Rat
1598258Dnajc17-ps3DnaJ heat shock protein family (Hsp40) member C17, pseudogene 36100020724100021316Rat
1598273Ldha-ps5lactate dehydrogenase A, pseudogene 567351843473519312Rat
1598274Gapdh-ps103Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 10367348811273489095Rat
1598277Kpna1-ps3karyopherin subunit alpha 1, pseudogene 366542390965426151Rat
1598278Eno1-ps32enolase 1, pseudogene 3266184662961847912Rat
1598264Ube2e3-ps1ubiquitin-conjugating enzyme E2E 3, pseudogene 169135235091352964Rat
1598017Gpatch4-ps1G patch domain-containing protein 4, pseudogene 166180238961803939Rat
1598309Ppil2-ps1peptidylprolyl isomerase like 2, pseudogene 16100024128100025851Rat
1598271Rps6-ps8ribosomal protein S6, pseudogene 867529572875296526Rat
1598272Pmpcb-ps2peptidase, mitochondrial processing subunit beta, pseudogene 267402462074043020Rat
1597505LOC687780similar to Finkel-Biskis-Reilly murine sarcoma virusubiquitously expressed68322875183229261Rat
2311610Cox16cytochrome c oxidase assembly factor COX166101162231101181277Rat
2315525Nemfnuclear export mediator factor68779165087835826Rat
2319136LOC100361944hypothetical protein LOC10036194469136525091365507Rat
2320031LOC100364934Leydig cell tumor 10 kDa protein-like66633698966337899Rat
2318430Alad-ps1aminolevulinate dehydratase, pseudogene 168691994486921014Rat
2319091Gemin8-ps1gem (nuclear organelle) associated protein 8, pseudogene 168056394380564624Rat
2321461Rpl15-ps2ribosomal protein L15, pseudogene 267411817574118794Rat
2322884LOC100360061mCG18732-like67933121079332658Rat
2323006Rps10l1ribosomal protein S10-like 167203087672031430Rat
2320876Acp1-ps1acid phosphatase 1, pseudogene 168806492388066299Rat
2322466Trim13-ps1tripartite motif-containing 13, pseudogene 168069387880695270Rat
2322517Fam167b-ps1family with sequence similarity 167, member B, pseudogene 168062965380630098Rat
2322683Nkapd1-ps1NKAP domain containing 1, pseudogene 167189601971898777Rat
2323296Snrnp48-ps2small nuclear ribonucleoprotein U11/U12 subunit 48, pseudogene 266893614068948448Rat
2323500Phgdh-ps1phosphoglycerate dehydrogenase, pseudogene 166664132866642516Rat
4888535Mir3593microRNA 359367325264773252737Rat
2323636Fam177a1family with sequence similarity 177, member A167263262872647553Rat
2323665Immp2linner mitochondrial membrane peptidase subunit 265807003558970165Rat
2323682Vti1bvesicle transport through interaction with t-SNAREs 1B69795770097976491Rat
2324062LOC100362796cDNA sequence BC048679-like68729662687331624Rat
2325061Ndufaf2-ps1NADH:ubiquinone oxidoreductase complex assembly factor 2, pseudogene 169907473899075236Rat
2325062LOC100359668ferritin light chain 267324261273243527Rat
2325111LOC100359616ribosomal protein L36-like69880953198810620Rat
6489654LOC100911923uncharacterized LOC10091192367395425873994337Rat
6488546Mia2MIA SH3 domain ER export factor 267678750876885246Rat
6492129Odc1-ps1ornithine decarboxylase 1, pseudogene 16100034351100035988Rat
6494016Dnajc17-ps1DnaJ heat shock protein family (Hsp40) member C17, pseudogene 16100039837100040821Rat
6487545LOC100912402polyadenylate-binding protein 1-like6102655680102656969Rat
6494851Smim12-ps1small integral membrane protein 12, pseudogene 168735379387354855Rat
6501756Gsta4-ps2glutathione S-transferase alpha 4, pseudogene 268754048887541411Rat
6502380LOC100909680uncharacterized LOC10090968069748944197497915Rat
6495886Hmgn1-ps1high mobility group nucleosome binding domain 1, pseudogene 168571907485719621Rat
6495888LOC100910914M-phase phosphoprotein 6-like6100038861100039509Rat
6504372Mipol1mirror-image polydactyly 167475529375090403Rat
6497625Vdac1-ps15voltage-dependent anion channel 1, pseudogene 1568327846983279491Rat
7489043Scarna3small Cajal body-specific RNA 369922243299222521Rat
7509444Rnf138-ps2ring finger protein 138, pseudogene 269702749397030849Rat
7512636LOC102553860uncharacterized LOC10255386069011348990127317Rat
7513588LOC102551922uncharacterized LOC10255192268895437088960566Rat
7536015LOC102552673uncharacterized LOC1025526736101559962101564971Rat
7499250LOC102553691spermatogenesis-associated protein 31C2-like68998844089991849Rat
7503266LOC102547797uncharacterized LOC10254779769772965697758676Rat
7503616LOC10254683340S ribosomal protein S7-like69567070895716079Rat
7646071Cetn4-ps1centrin 4, pseudogene 167217718272181768Rat
7646365LOC102548461uncharacterized LOC10254846167227414272290681Rat
7647113LOC102552151uncharacterized LOC10255215167469182474698718Rat
7648446LOC102552179uncharacterized LOC10255217968950715289523189Rat
7650041LOC102547892uncharacterized LOC10254789269786835297871137Rat
7622910LOC102552601uncharacterized LOC1025526016101502291101514173Rat
7652149LOC102555435uncharacterized LOC10255543566257374162579908Rat
7653006LOC102549102uncharacterized LOC10254910268885666188887580Rat
7624969Alg11-ps2ALG11, alpha-1,2-mannosyltransferase, pseudogene 267425915874260776Rat
7577344Cox7b-ps1cytochrome c oxidase subunit 7B, pseudogene 169441821294418746Rat
7625633LOC102548655uncharacterized LOC10254865568824471488246140Rat
7627887LOC102546496uncharacterized LOC10254649666690249166930836Rat
7641929Rabggtb-ps1Rab geranylgeranyltransferase subunit beta, pseudogene 169190857391913048Rat
7658903LOC102548223uncharacterized LOC10254822368793903487952758Rat
7629096LOC102547735uncharacterized LOC10254773567087483070899484Rat
7643655Tmem183a-ps2transmembrane protein 183A, pseudogene 269268808192689176Rat
7644584LOC102547663transcription factor BTF3-like68776203787762866Rat
7661508LOC102556012uncharacterized LOC10255601269516301095171054Rat
7593102LOC102555380uncharacterized LOC10255538066252587262555470Rat
7617617LOC102552530uncharacterized LOC1025525306101390013101404833Rat
7571132LOC102546647uncharacterized LOC10254664769866611898690763Rat
7619249LOC102546421uncharacterized LOC10254642166668963566699336Rat
7574462LOC102552313uncharacterized LOC10255231368947505489483654Rat
7578757LOC102547890uncharacterized LOC10254789067182556671832386Rat
7561334LOC102548522uncharacterized LOC10254852267222721772231374Rat
7563444LOC102550345uncharacterized LOC10255034569215313792157129Rat
7582340LOC102551114uncharacterized LOC10255111469298790693002006Rat
7564407LOC102548030uncharacterized LOC10254803068794030987945176Rat
7565188Vcpkmtvalosin containing protein lysine methyltransferase68803648588042151Rat
7735797LOC102550910uncharacterized LOC10255091069287743392904513Rat
7751922LOC102551688uncharacterized LOC10255168867388432173909296Rat
7695433LOC102549502uncharacterized LOC10254950269110387691124774Rat
7725900LOC102556158uncharacterized LOC10255615866503448965134280Rat
7712380Rpl11-ps7ribosomal protein L11, pseudogene 769494420294944813Rat
8157638Rn7sl1RNA component of signal recognition particle 7SL168763680887637106Rat
7741692LOC102552060uncharacterized LOC10255206068914475889147891Rat
7744426LOC102546497uncharacterized LOC10254649767326553073266513Rat
7719546Lgals1-ps1galectin 1, pseudogene 169880492298805598Rat
7748644LOC102552092uncharacterized LOC10255209267399997874011751Rat
7709127LOC102547662uncharacterized LOC10254766267067789370687394Rat
7709349LOC102553798uncharacterized LOC10255379869000503790063921Rat
7728058LOC102557478uncharacterized LOC10255747866844343768505774Rat
7709993LOC102552965uncharacterized LOC1025529656102119638102129558Rat
7681866LOC102547293uncharacterized LOC1025472936103270272103271699Rat
9129693LOC103692636uncharacterized LOC10369263667190298071916408Rat
9093992LOC103690066uncharacterized LOC1036900666101227472101246665Rat
9072809LOC103692621oligosaccharyltransferase complex subunit OSTC pseudogene66043133660453277Rat
9159722LOC103695309glyceraldehyde-3-phosphate dehydrogenase pseudogene67706861277069628Rat
9167354LOC103695296glyceraldehyde-3-phosphate dehydrogenase pseudogene67232884872329825Rat
9083574LOC103690152disintegrin and metalloproteinase domain-containing protein 21-like6101256441101265828Rat
9084011LOC10369265340S ribosomal protein SA pseudogene69011930790120185Rat
9352471LOC103692619uncharacterized LOC10369261966128222161329753Rat
9323203LOC103692669centrin-2 pseudogene69828300098283445Rat
9378291Mterf1-ps4mitochondrial transcription termination factor 1, pseudogene 468507777585097837Rat
9242302LOC103692643uncharacterized LOC10369264368237426182378710Rat
9299214LOC103692654chloride intracellular channel protein 4 pseudogene68814629188151998Rat
9258221LOC103692640transcription elongation factor B polypeptide 1 pseudogene67517116175171726Rat
9344005LOC103692665uncharacterized LOC10369266569633641496385028Rat
9463915Ankrd49-ps1ankyrin repeat domain 49, pseudogene 169598487495992026Rat
9317184LOC103692627uncharacterized LOC10369262766260211862606902Rat
9427736Odc1-ps6ornithine decarboxylase 1, pseudogene 669932568899326687Rat
9331285H3f3a-ps7H3.3 histone A, pseudogene 769928072899281551Rat
9219694LOC103692628uncharacterized LOC10369262866696117167055411Rat
11360540LOC10835125560S ribosomal protein L35a pseudogene69164430291644739Rat
11370304LOC108351238uncharacterized LOC10835123867371889173725872Rat
11454361LOC108351251uncharacterized LOC10835125169148942091503040Rat
11455066LOC108351364uncharacterized LOC10835136467812468678134031Rat
11472163Rpl36a-ps20ribosomal protein L36A, pseudogene 2069100452191004960Rat
11457500LOC10835125360S ribosomal protein L9 pseudogene69064722690647925Rat
11450428LOC108351230uncharacterized LOC10835123066260524662616196Rat
11440663LOC108351235tensin-2 pseudogene66959456869601783Rat
11452082LOC108351240uncharacterized LOC10835124067432347874333662Rat
11405764LOC108351234uncharacterized LOC10835123466898468968985303Rat
11407073LOC108351229transformer-2 protein homolog alpha pseudogene66184100361841697Rat
11407250LOC108351259uncharacterized LOC10835125969298123392987867Rat
11375288LOC108351336U6 snRNA-associated Sm-like protein LSm8 pseudogene69754355197545937Rat
11387951Ppia-ps6peptidylprolyl isomerase A, pseudogene 668281357082814071Rat
11390493LOC108351266uncharacterized LOC10835126669871077098715952Rat
11391162Trnak-cuu9transfer RNA lysine (anticodon CUU) 968947829889478370Rat
11403672LOC108351228uncharacterized LOC10835122866052476360536010Rat
11500716LOC108351250uncharacterized LOC10835125069032156390324236Rat
11476601LOC108348171uncharacterized LOC10834817169552731595536614Rat
11506221LOC108351369uncharacterized LOC10835136969319540193201655Rat
11509237LOC108351242uncharacterized LOC10835124268432810184449141Rat
11499331Rpl15-ps3ribosomal protein L15, pseudogene 369034644690347056Rat
11515855LOC108351257uncharacterized LOC10835125769172975191740470Rat
11488287LOC108351243uncharacterized LOC10835124368444920884471178Rat
11491035LOC108351262uncharacterized LOC10835126269512142195123599Rat
11491526LOC108351236uncharacterized LOC10835123667249434372522266Rat
14398595Mir3084a-4microRNA mir-3084a-468781508487815152Rat
41321929LOC120103559uncharacterized LOC12010355969817488998190528Rat
41379325Gapdh-ps67Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 6766252479362525797Rat
41086474Eef1g-ps10eukaryotic translation elongation factor 1 gamma, pseudogene 1068477313984774268Rat
41086662Ldha-ps27lactate dehydrogenase A, pseudogene 2767353767673538554Rat
41087372LOC120093280U6 spliceosomal RNA67723686577236971Rat
41111149LOC120093440small nucleolar RNA SNORA1767746342877463557Rat
41167763Odc1-ps10ornithine decarboxylase 1, pseudogene 106100080927100081946Rat
41281687Arl1-ps1ADP-ribosylation factor like GTPase 1, pseudogene 166895551168962169Rat
41088753LOC120103535uncharacterized LOC12010353566916814369174099Rat
41278108LOC120093303U6 spliceosomal RNA67249442772494534Rat
41088860LOC120093460small nucleolar RNA SNORA1768486751684867654Rat
41089517LOC120093205uncharacterized LOC12009320567006935370091813Rat
41114950LOC120093357U1 spliceosomal RNA67220306672203228Rat
41140941LOC120093313U1 spliceosomal RNA67221868472218847Rat
41278504LOC120093504U4 spliceosomal RNA68906885389069001Rat
41359618LOC120093501U4 spliceosomal RNA68280110282801218Rat
41384656LOC120093424small nucleolar RNA SNORA2/SNORA34 family67109002471090159Rat
41172264LOC120103531uncharacterized LOC12010353166668467466685883Rat
41206585LOC120093507U6 spliceosomal RNA68993071789930823Rat
41254020LOC120093508U6 spliceosomal RNA67081389370813999Rat
41279995LOC120093283U6 spliceosomal RNA66060760760607713Rat
41326578Ppid-ps7peptidylprolyl isomerase D, pseudogene 769080428990850500Rat
41386977LOC120103557uncharacterized LOC12010355769677556596786927Rat
41173563LOC120093276U6 spliceosomal RNA66175955261759658Rat
41209044Hsp90ab1-ps16heat shock protein 90 alpha family class B member 1, pseudogene 1667750202177511120Rat
41328006LOC120103546uncharacterized LOC12010354668906754789082421Rat
41328288LOC120093502U4 spliceosomal RNA66469570864695834Rat
41174745LOC120093305U6 spliceosomal RNA69547414695474248Rat
41174787Snord13l1small nucleolar RNA, C/D box 13 like 168714123087141336Rat
41363902LOC120093216uncharacterized LOC1200932166102742656102752167Rat
41096018LOC120093258uncharacterized LOC12009325868459988384600479Rat
41096087LOC120093212uncharacterized LOC12009321268487209884875858Rat
41120331LOC120093256uncharacterized LOC12009325668331404683353136Rat
41148093U2l3U2 spliceosomal RNA like 367673093876731128Rat
41188210Trnaa-agc97transfer RNA alanine (anticodon AGC) 9769449270394492783Rat
41212191LOC120093497U4 spliceosomal RNA67169935171699530Rat
41331265Ldha-ps26lactate dehydrogenase A, pseudogene 2667352805573528933Rat
41189254LOC120103554uncharacterized LOC12010355469438221594395832Rat
41343341LOC120093379U1 spliceosomal RNA67170661771706776Rat
41393512LOC120093467small nucleolar RNA SNORA1767401621574016333Rat
41155361Rpl10a-ps4ribosomal protein L10A, pseudogene 467277685272778065Rat
41155391LOC120093489U2 spliceosomal RNA67521655975216724Rat
41179058LOC120103570uncharacterized LOC1201035706100819254100820366Rat
41179368LOC120093436small nucleolar RNA SNORA1768277764282777773Rat
41343659LOC120093108dehydrogenase/reductase SDR family member 7-like69119740591207825Rat
41343863LOC120093465U2 spliceosomal RNA68601876886018953Rat
41367672LOC120093335U1 spliceosomal RNA67222704472227207Rat
41156721LOC120093430small nucleolar RNA SNORA4868340667483406809Rat
41192509LOC120093462small nucleolar RNA SNORA1766219361062193737Rat
41215294Rpl26-ps4ribosomal protein L26, pseudogene 469206709892067681Rat
41344929LOC120093217uncharacterized LOC1200932176102770524102773333Rat
41369129LOC12010356260S ribosomal protein L39-like69880152498804501Rat
41369547Gapdh-ps29Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2968543712585438127Rat
41369745LOC120103553uncharacterized LOC12010355369263794692672153Rat
41370298Ppa2-ps1inorganic pyrophosphatase 2, pseudogene67985657179860348Rat
41194368LOC120093500U4 spliceosomal RNA68086314280863276Rat
41268372LOC120093449small nucleolar RNA SNORA1766285928762859414Rat
41268906LOC120103525uncharacterized LOC12010352565940358259425212Rat
41372328LOC120093260uncharacterized LOC12009326069029469090296402Rat
41372374LOC120093491U2 spliceosomal RNA66251956662519704Rat
41070124Snora32small nucleolar RNA, H/ACA box 3268528818185288298Rat
41103385LOC120093278U6 spliceosomal RNA67006837370068479Rat
41159797LOC120103555uncharacterized LOC12010355569483906194841971Rat
41195602LOC120093317small nucleolar RNA SNORA73 family66305535063055553Rat
41195836LOC120093301U6 spliceosomal RNA67217547672175575Rat
41292080LOC120093255uncharacterized LOC12009325568324727683249845Rat
41104710Snord127small nucleolar RNA, C/D box 12768310859683108680Rat
41128136Odc1-ps9ornithine decarboxylase 1, pseudogene 969931392799316759Rat
41220332LOC120093215uncharacterized LOC1200932156102129322102131297Rat
41271388LOC120093314U6 spliceosomal RNA67757123077571335Rat
41293354LOC120103536uncharacterized LOC12010353666919891369201280Rat
41293789Trnaa-agc62transfer RNA alanine (anticodon AGC) 6267169429071694370Rat
41350299LOC120093284U6 spliceosomal RNA66862788368627990Rat
41374274LOC120103543uncharacterized LOC12010354368739378087415424Rat
41199209Snord45l1small nucleolar RNA, C/D box 45 like 168941468289414752Rat
41081960LOC120103540uncharacterized LOC12010354067588474075910540Rat
41200290LOC120093485U2 spliceosomal RNA66451313164513345Rat
41233473LOC120103561uncharacterized LOC12010356169879023198801466Rat
40945147LOC120093279U6 spliceosomal RNA67006906070069166Rat
40971021LOC120093210uncharacterized LOC12009321067230649372316083Rat
40997044LOC120093455small nucleolar RNA SNORA1766684549766845624Rat
40997153Eif5-ps7eukaryotic translation initiation factor 5, pseudogene 769699679296997862Rat
40998058Odc1-ps3ornithine decarboxylase 1, pseudogene 36100007232100008388Rat
40946442LOC120093470small nucleolar RNA SNORA1769185127491851333Rat
40947446LOC120093250uncharacterized LOC12009325066474904964779502Rat
41010932LOC120103563uncharacterized LOC12010356369886602798869636Rat
40949261LOC120103565uncharacterized LOC12010356569926055799267559Rat
40950765LOC120093319U7 small nuclear RNA66238648762386545Rat
40951447LOC120103529uncharacterized LOC12010352966495868964973053Rat
40952085S100a11-ps4S100 calcium binding protein A11, pseudogene 469701817797018474Rat
40977532LOC120103547uncharacterized LOC12010354769057634790580724Rat
41013569LOC120093478small nucleolar RNA SNORA7669587414995874265Rat
40978351LOC120103558uncharacterized LOC12010355869784014197844332Rat
40978870LOC120093300U6 spliceosomal RNA67775521977755326Rat
40927049LOC120093488U2 spliceosomal RNA69160922691609398Rat
40956319LOC120093464small nucleolar RNA SNORA1769687980896879931Rat
40956471LOC120093469small nucleolar RNA SNORA1769651141596511548Rat
40998590LOC120093311U6 spliceosomal RNA67990149179901594Rat
40930221LOC120093209uncharacterized LOC12009320967222237272224518Rat
40957535LOC120093486U2 spliceosomal RNA68021546380215666Rat
40958936LOC120093448small nucleolar RNA SNORA1768351670483516832Rat
40982521LOC120103556uncharacterized LOC12010355669511208995125645Rat
41003040LOC120103526uncharacterized LOC12010352666127517661282214Rat
41003170LOC120103549uncharacterized LOC12010354969137159391376095Rat
41004139LOC120093468small nucleolar RNA SNORA1766583512565835255Rat
40986268LOC120093214uncharacterized LOC1200932146101777753101790723Rat
40936444LOC120103527uncharacterized LOC12010352766199587361997541Rat
40963012LOC120093310U6 spliceosomal RNA67480579574805882Rat
41008171LOC120093401U1 spliceosomal RNA67832489078325029Rat
40963770LOC120103569uncharacterized LOC1201035696100398880100433827Rat
40988969LOC120093316small nucleolar RNA SNORA73 family69126560891265811Rat
41010064LOC120093251uncharacterized LOC12009325166856912168571922Rat
40967547LOC120093292U6 spliceosomal RNA67335971173359813Rat
40943757LOC120093254uncharacterized LOC12009325467632738976335466Rat
41074541LOC120093346U1 spliceosomal RNA67220576072205923Rat
41075203LOC120103538uncharacterized LOC12010353867376066973766166Rat
41242542LOC120093208uncharacterized LOC12009320867220307572211594Rat
41049039LOC120103548pecanex-like protein 469125465791258779Rat
41076279LOC120103533uncharacterized LOC12010353366885816468862838Rat
41245801LOC120093302U1 spliceosomal RNA67221144572211608Rat
41246610LOC120103571uncharacterized LOC1201035716100904353100930460Rat
41316972LOC120093257uncharacterized LOC12009325768417249884177501Rat
41050981LOC120093454U2 spliceosomal RNA67649533176495501Rat
41319232LOC120093261uncharacterized LOC12009326169433207794334223Rat
41319468LOC120093324U1 spliceosomal RNA67222436972224532Rat
41029885LOC120093291U1 spliceosomal RNA67219467172194834Rat
41052990LOC120103560uncharacterized LOC12010356069873266698741653Rat
41135267LOC120093458small nucleolar RNA SNORA1766688136966881496Rat
41333177LOC12010357260S ribosomal protein L21-like6101527260101527772Rat
41144192LOC120093207uncharacterized LOC12009320767220596872207464Rat
41255611LOC120103424uncharacterized LOC12010342469894309698960308Rat
41338597LOC120103552uncharacterized LOC12010355269210173992105881Rat
41151289LOC120103564uncharacterized LOC12010356469899946799001347Rat
41257709LOC120103532uncharacterized LOC12010353266779498267868731Rat
41335350LOC120093450small nucleolar RNA SNORA1767371998573720115Rat
41057606LOC120103530uncharacterized LOC12010353066546133865583973Rat
41032403Rps8-ps6ribosomal protein S8, pseudogene 668761771287619541Rat
41059091LOC120103541uncharacterized LOC12010354167940880279466213Rat
41033385LOC120093510U6 spliceosomal RNA67563707175637177Rat
41033419Cbx1-ps2chromobox 1, pseudogene 269713808397147280Rat
41059572Odc1-ps11ornithine decarboxylase 1, pseudogene 116100089343100090052Rat
41059820LOC120093445small nucleolar RNA SNORA176102427215102427337Rat
41035462Snora26l1small nucleolar RNA, H/ACA box 26 like 167682355176823672Rat
41061609LOC120093487U2 spliceosomal RNA68471415384714319Rat
41227971LOC120093434small nucleolar RNA SNORA4867210130272101443Rat
41235353LOC120103545uncharacterized LOC12010354568795605487974828Rat
41302933Gapdh-ps90Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9066739692267441051Rat
41303109LOC120093206uncharacterized LOC12009320667220087072202818Rat
41016925U3l1small nucleolar RNA U3 like 167965620179656389Rat
41236256LOC120103550uncharacterized LOC12010355069142876991442772Rat
41305281Trnav-aac44transfer RNA valine (anticodon AAC) 4467469405574694135Rat
41017613LOC120103544uncharacterized LOC12010354468781733187818676Rat
41067375Prelid1-ps3PRELI domain containing 1, pseudogene 367661641576617250Rat
41067405Trnaa-agc24transfer RNA alanine (anticodon AGC) 2468944089989440979Rat
41020689LOC120103542uncharacterized LOC12010354268650696286535785Rat
41239514LOC120093306U6 spliceosomal RNA69609555596095658Rat
41044899LOC120103539uncharacterized LOC12010353967465429674666802Rat
41023230LOC120093444small nucleolar RNA SNORA1768369407183694202Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11241D6Mit311767220263272202749Ratregion
11241D6Mit311767222752472227641Ratregion
11242D6Arb1738967220263372203021Ratregion
11242D6Arb1738967222725172227640Ratregion
33800D6Mit139768947314389473242Ratregion
33987D6Mit821569370131093701509Ratregion
33993D6Mit215768113288981133036Ratregion
34306D6Mgh510467346336373463459Ratregion
11347D6Wox1824267583645575836697Ratregion
33662D6Mit111869496892894969056Ratregion
37280D6Rat10414068531106185311189Ratregion
37376D6Rat8717369487683194877020Ratregion
36813D6Rat2017667877764178777799Ratregion
36834D6Rat1751306103543936103544066Ratregion
36856D6Rat4914067450824774508389Ratregion
37848D6Rat10018269683399796834179Ratregion
37876D6Rat5921268231684282317040Ratregion
36518D6Rat131476102872536102872683Ratregion
36648D7Rat3817465907619559076366Ratregion
36665D6Rat1417669653573096535927Ratregion
36729D6Rat2313967163626671636405Ratregion
36761D6Rat6317369248448292484655Ratregion
34886D6Rat151736100873387100873560Ratregion
35036D6Rat2412566148089561481017Ratregion
35102D6Rat1617669312766793127822Ratregion
35140D6Rat2210867259359672593685Ratregion
35583D6Rat5015066128390461284075Ratregion
35603D6Rat2117567462775574627930Ratregion
35659D6Rat1815268976287789763029Ratregion
35727D6Rat1916067862976478629902Ratregion
39934D6Rat12022669883991598840146Ratregion
38268D6Rat10211369441398594414104Ratregion
38392D6Rat8524567519593275196177Ratregion
40588D6Rat16517069019809890198260Ratregion
38494D6Rat8821969635641796356634Ratregion
38608D6Rat10614266553155565531697Ratregion
38634D6Rat1032286100364669100364901Ratregion
40044D6Rat15414866261353562613667Ratregion
40222D6Rat15313468691421186914343Ratregion
40334D6Rat12316769401653394016714Ratregion
38978D6Rat9820167692266376922872Ratregion
39100D6Rat7221169471038294710591Ratregion
39132D6Rat7023967911773079117991Ratregion
39146D6Rat972226100251887100252113Ratregion
39340D6Rat7320066944906769449277Ratregion
39386D6Rat12223569347972693479968Ratregion
42198D6Arb2014069364159693641736Ratregion
42784D6Rat20124366435743064357671Ratregion
42786D6Rat16920266304036063040562Ratregion
42787D6Rat20211765901136759011478Ratregion
42788D6Rat20423866136247361362692Ratregion
42791D6Rat19810366725990067259987Ratregion
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5063912BE12022115469888852998888683Ratregion
5064086BE12060117669196655291966728Ratregion
5065800BE1098931556101908656101908811Ratregion
5060794BF38915612068849955288499672Ratregion
5062536BF4033849369199429091994383Ratregion
5066016BF41311919369588033095880523Ratregion
5066062AA92543220968776506887765277Ratregion
5064508BI29687721969550407095504288Ratregion
5066122BE1168991756102116661102116836Ratregion
5066144BF4136001336100882609100882742Ratregion
5066186BF40744411769798504097985157Ratregion
5066216PMC102181P222167399688873997109Ratregion
5061230AW5268691846100170429100170613Ratregion
5064694BE10833915267002216870022320Ratregion
5063206BI30141015469474304394743197Ratregion
5064920BF39992621569263811392638328Ratregion
5061612BF3968952366103358677103358913Ratregion
5086879AI22830416366906833569068498Ratregion
5086159BM38611715067513153375131683Ratregion
5087301AW53155515069485440994854559Ratregion
5087315AI4074491046103431607103431711Ratregion
5082775BF3900701666101123649101123815Ratregion
5082821BI28110516469925915199259315Ratregion
5082839BF39021615266248876662488918Ratregion
5087384BQ1947242006102844459102844659Ratregion
5089041AU04891921567154026271540477Ratregion
5089153AU04898610768451824684518283Ratregion
5083225BI27548219766918154769181744Ratregion
5083245BG38056022669594841395948639Ratregion
5088427AU04856311665988680159886917Ratregion
5088479AU04859414568797561787975762Ratregion
5089495AU04918925966108660061086863Ratregion
5090827AU04998626767143788971438156Ratregion
5088907AU04884126469669192896692192Ratregion
5090317AU04967911769496893594969052Ratregion
5084002AI0109229067248476672484856Ratregion
5084052AI40764319767268637072686567Ratregion
5081531BE1171961596101014288101014447Ratregion
5081791BE1182791566101404596101404752Ratregion
5084610AI40994516269893738198937543Ratregion
5084706AI17914214567380848273808627Ratregion
5084410AI17738514168764351987643660Ratregion
5081807BE11838815367263289672633049Ratregion
5084756AI00831418169184078391840964Ratregion
5084802AI4121269769786850897868605Ratregion
5084840AI1709389968844601288446111Ratregion
5088173AU04841129868169522681695524Ratregion
5082283BI27447419568950819689508391Ratregion
5090817AU0499802266103210329103210555Ratregion
5085084AW53312415267682737776827529Ratregion
5085318BQ20993815066772811867728268Ratregion
5090301AU04967013267740607077406202Ratregion
5090319AU04968022669852200398522231Ratregion
5090433AU04974713668917956089179696Ratregion
5088889AU04883016269085893690859098Ratregion
5081390AI45455820366133102461331227Ratregion
5081432AI54790218667503402275034208Ratregion
5085868BM39098217367536731375367486Ratregion
5085950BM38449618167030524470305425Ratregion
5085970AI10084618368961825289618435Ratregion
5084542AI17038924367588176675882010Ratregion
5084588AA94573410067264955572649655Ratregion
5086199AA85861720669411799294118198Ratregion
5086249BE12144315369765253797652690Ratregion
5086276AI7130252006100406067100406267Ratregion
5081042RH14193120766169214461692351Ratregion
5081118RH14197520968950722989507438Ratregion
5081244RH14204918367605267276052858Ratregion
5081266RH14206121269769832197698533Ratregion
5084864AI1722029669507081995070915Ratregion
5085050UniSTS:25660864867672627876726909Ratregion
5086667BE1072292046100328242100328446Ratregion
5081450AI55639418168821986288220561Ratregion
5083369AA81873616467676683376767000Ratregion
5081721AA9991532046101270479101270683Ratregion
5081815BI27371514469055674590556889Ratregion
5085762AI1020131746101073074101073247Ratregion
5085992AW53596417069765267197652841Ratregion
5084054AI23256412068816458588164705Ratregion
5503050Fzd610169810087498100975Ratregion
5503168ksks2233006102008403102008703Ratregion
5503607Titf1105767399843573999492Ratregion
5507539G197141446100609900100610044Ratregion
5503500Cyp5131767672702176727338Ratregion
5503941Esr227369489805194899380Ratregion
5504302D1S1950E9668439398884394084Ratregion
5504348D11S369010469643212996432233Ratregion
5504616PMC316473P124767513353175133778Ratregion
5505155Lrfn588667980636579807251Ratregion
5504932Zbtb15669511221995112275Ratregion
5505349Six6168969163473691636425Ratregion
5505412Ndufa1090065988017459881074Ratregion
5505885UniSTS:4959999167583418075834271Ratregion
5505915Kcnh59369382099993821092Ratregion
5506072UniSTS:4982896668979480589794871Ratregion
5506236Satt124068558221485583701Ratregion
5506236Satt124068558221485583702Ratregion
5506409Nova154066378595563786495Ratregion
5506521ARF6_71986668785389987854765Ratregion
5506909G478783076100463310100463617Ratregion
5507307fc03e11.x191767142896371429882Ratregion
5507311fc10a03.x113046102616986102618290Ratregion
5507199UniSTS:22524316966667682966676998Ratregion
5507201UniSTS:22521814967400063674000785Ratregion
5506925G5409314367676591676766059Ratregion
5507095UniSTS:22454415667372162573721781Ratregion
5507241SHGC-15524830169268875992688994Ratregion
5507271fc41h02.x181768352003283520849Ratregion
5499913UniSTS:23551233168804147988041810Ratregion
5499599MARC_1069-1070:991929832:116869748265597482823Ratregion
5499655MARC_6691-6694:992007331:156669266800092668566Ratregion
5499657MARC_6693-6692:992007336:1108269266798192669063Ratregion
5500196SHGC-15229793767832263278323569Ratregion
5502186MARC_7649-7650:996688053:1066960056669600797Ratregion
5500533RH13589618368980096189801144Ratregion
5500661RH13649920967963759379637802Ratregion
5500737ODOSTSI32969315369193154020Ratregion
5500360GDB:31592515969455441194554570Ratregion
5503426G1596620469893045198930655Ratregion
5503538NOVA1__606561366378348363784096Ratregion
5501191PMC152810P120967399833673998545Ratregion
5501295D11S260514566684375066843900Ratregion
5501608RH44636066184121561841338Ratregion
5501944MARC_17915-17916:1025020646:11306101277978101278829Ratregion
5502909Nkx2-143267399778773998219Ratregion
5507147UniSTS:22484115466772574767725901Ratregion
5502871Foxa192267513108875132010Ratregion
Position Markers

Peak: (D6Mit2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2681,132,889 - 81,133,036 (+)MAPPER
Rnor_6.0684,763,275 - 84,763,421NCBI
Rnor_5.0694,275,468 - 94,275,614UniSTS
RGSC_v3.4684,287,190 - 84,287,337RGD
RGSC_v3.4684,287,191 - 84,287,337UniSTS
RGSC_v3.1684,290,646 - 84,290,793RGD
Celera679,755,506 - 79,755,652UniSTS
RH 3.4 Map6554.0UniSTS
RH 3.4 Map6554.0RGD
RH 2.0 Map6798.9RGD
SHRSP x BN Map652.2299RGD
Cytogenetic Map6 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Mcsm1

RGD Curation Notes
Note Type Note Reference
qtl_general interacts with Mc8 62417