Gene: Atg4d (autophagy related 4D, cysteine peptidase) Rattus norvegicus
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Symbol: Atg4d
Name: autophagy related 4D, cysteine peptidase
Description: ENCODES a protein that exhibits cysteine-type peptidase activity (inferred); INVOLVED IN autophagy (inferred); protein transport (inferred); proteolysis (inferred); PARTICIPATES IN autophagy pathway; FOUND IN cytoplasm (inferred); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; bisphenol A; oxaliplatin
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ATG4 autophagy related 4 homolog D; ATG4 autophagy related 4 homolog D (S. cerevisiae); autophagy-related 4D; autophagy-related 4D (S. cerevisiae); cysteine protease ATG4D; LOC686505; similar to APG4-D protein
Orthologs:
Homo sapiens (human) : ATG4D (autophagy related 4D cysteine peptidase)  HGNC  Alliance
Mus musculus (house mouse) : Atg4d (autophagy related 4D, cysteine peptidase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atg4d (autophagy related 4D cysteine peptidase)
Pan paniscus (bonobo/pygmy chimpanzee) : ATG4D (autophagy related 4D cysteine peptidase)
Canis lupus familiaris (dog) : ATG4D (autophagy related 4D cysteine peptidase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atg4d (autophagy related 4D cysteine peptidase)
Sus scrofa (pig) : ATG4D (autophagy related 4D cysteine peptidase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0822,291,445 - 22,301,331 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0822,344,081 - 22,353,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera821,199,310 - 21,208,865 (+)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atg4d
Alliance Gene
NCBI Gene
Ensembl Gene
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NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1596392
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-01-30
Status: ACTIVE