Spata33 (spermatogenesis associated 33) - Rat Genome Database

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Gene: Spata33 (spermatogenesis associated 33) Rattus norvegicus
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Symbol: Spata33
Name: spermatogenesis associated 33
RGD ID: 1561507
Description: Predicted to be involved in mitophagy. Predicted to act upstream of or within fertilization; flagellated sperm motility; and protein localization. Predicted to be located in male germ cell nucleus; mitochondrion; and sperm mitochondrial sheath. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPATA33 (spermatogenesis associated 33); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC292078; LOC292078; RGD1561507; similar to hypothetical protein FLJ31606; spermatogenesis-associated protein 33; uncharacterized protein LOC292078
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,155,033 - 68,167,415 (+)NCBIGRCr8
mRatBN7.21951,246,514 - 51,258,894 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,246,514 - 51,258,894 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,041,444 - 58,053,818 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,721,435 - 58,733,813 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,940,044 - 60,952,418 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,010,085 - 56,022,424 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,010,085 - 56,022,424 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,715,538 - 66,727,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,530,342 - 53,542,725 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1950,482,078 - 50,494,759 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23844118  


Genomics

Comparative Map Data
Spata33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,155,033 - 68,167,415 (+)NCBIGRCr8
mRatBN7.21951,246,514 - 51,258,894 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,246,514 - 51,258,894 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,041,444 - 58,053,818 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,721,435 - 58,733,813 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,940,044 - 60,952,418 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,010,085 - 56,022,424 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,010,085 - 56,022,424 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,715,538 - 66,727,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,530,342 - 53,542,725 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1950,482,078 - 50,494,759 (+)NCBICelera
Cytogenetic Map19q12NCBI
SPATA33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,657,776 - 89,670,458 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,657,740 - 89,671,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,724,184 - 89,736,866 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,251,711 - 88,265,176 (+)NCBINCBI36Build 36hg18NCBI36
Celera1674,788,682 - 74,802,150 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,419,667 - 75,432,384 (+)NCBIHuRef
CHM1_11691,134,934 - 91,147,650 (+)NCBICHM1_1
T2T-CHM13v2.01695,742,587 - 95,755,273 (+)NCBIT2T-CHM13v2.0
Spata33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,939,572 - 123,948,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,939,571 - 123,948,785 (+)EnsemblGRCm39 Ensembl
GRCm388123,212,837 - 123,222,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,212,832 - 123,222,046 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,736,758 - 125,745,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,098,922 - 126,102,995 (+)NCBIMGSCv36mm8
Celera8127,451,851 - 127,461,090 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.08NCBI
Spata33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555413,223,552 - 3,232,837 (+)NCBIChiLan1.0ChiLan1.0
SPATA33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,448,101 - 99,529,147 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,361,476 - 105,418,859 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,411,406 - 70,425,847 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11690,017,678 - 90,031,020 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1690,017,678 - 90,031,020 (+)Ensemblpanpan1.1panPan2
Spata33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,607,177 - 24,612,935 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936641360,941 - 366,496 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16341,276 - 351,987 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26467,848 - 478,647 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1575,002,037 - 75,011,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl575,002,359 - 75,013,583 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666047488,619 - 498,033 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746294,432 - 302,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746294,427 - 302,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spata33
70 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:106
Interacting mature miRNAs:110
Transcripts:ENSRNOT00000058216
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat

Markers in Region
BE110224  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,244,824 - 51,244,990 (+)MAPPERmRatBN7.2
Rnor_6.01956,008,396 - 56,008,561NCBIRnor6.0
Rnor_5.01966,713,849 - 66,714,014UniSTSRnor5.0
RGSC_v3.41953,528,653 - 53,528,818UniSTSRGSC3.4
RH 3.4 Map19710.81UniSTS
Cytogenetic Map19q12UniSTS
BE110287  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21951,258,658 - 51,258,861 (+)MAPPERmRatBN7.2
Rnor_6.01956,022,189 - 56,022,391NCBIRnor6.0
Rnor_5.01966,727,062 - 66,727,264UniSTSRnor5.0
RGSC_v3.41953,542,490 - 53,542,692UniSTSRGSC3.4
Celera1950,494,524 - 50,494,726UniSTS
RH 3.4 Map19711.31UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000058216   ⟹   ENSRNOP00000055016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,246,514 - 51,258,894 (+)Ensembl
Rnor_6.0 Ensembl1956,010,085 - 56,022,424 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111955   ⟹   ENSRNOP00000087485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,246,807 - 51,258,741 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115727   ⟹   ENSRNOP00000090592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,246,514 - 51,258,866 (+)Ensembl
RefSeq Acc Id: NM_001106195   ⟹   NP_001099665
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,155,033 - 68,167,415 (+)NCBI
mRatBN7.21951,246,514 - 51,258,894 (+)NCBI
Rnor_6.01956,010,085 - 56,022,424 (+)NCBI
Rnor_5.01966,715,538 - 66,727,297 (+)NCBI
RGSC_v3.41953,530,342 - 53,542,725 (+)RGD
Celera1950,482,078 - 50,494,759 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099665 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92793 (Get FASTA)   NCBI Sequence Viewer  
  EDL92794 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000055016.2
  ENSRNOP00000087485.1
  ENSRNOP00000090592.1
RefSeq Acc Id: NP_001099665   ⟸   NM_001106195
- UniProtKB: D3Z8L2 (UniProtKB/TrEMBL),   A6IZW5 (UniProtKB/TrEMBL),   A0A8I6ADU7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000055016   ⟸   ENSRNOT00000058216
Ensembl Acc Id: ENSRNOP00000090592   ⟸   ENSRNOT00000115727
Ensembl Acc Id: ENSRNOP00000087485   ⟸   ENSRNOT00000111955

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8L2-F1-model_v2 AlphaFold D3Z8L2 1-136 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701220
Promoter ID:EPDNEW_R11744
Type:initiation region
Name:Spata33_1
Description:spermatogenesis associated 33
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01956,010,109 - 56,010,169EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561507 AgrOrtholog
BioCyc Gene G2FUF-5336 BioCyc
Ensembl Genes ENSRNOG00000038239 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000058216.3 UniProtKB/TrEMBL
  ENSRNOT00000111955.1 UniProtKB/TrEMBL
  ENSRNOT00000115727.1 UniProtKB/TrEMBL
InterPro DUF4609 UniProtKB/TrEMBL
KEGG Report rno:292078 UniProtKB/TrEMBL
NCBI Gene 292078 ENTREZGENE
PANTHER PTHR38649 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 33 UniProtKB/TrEMBL
Pfam DUF4609 UniProtKB/TrEMBL
PhenoGen Spata33 PhenoGen
RatGTEx ENSRNOG00000038239 RatGTEx
UniProt A0A8I6ADU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GG17_RAT UniProtKB/TrEMBL
  A6IZW5 ENTREZGENE, UniProtKB/TrEMBL
  D3Z8L2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-25 Spata33  spermatogenesis associated 33  RGD1561507  similar to hypothetical protein FLJ31606  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561507  similar to hypothetical protein FLJ31606   RGD1561507_predicted  similar to hypothetical protein FLJ31606 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561507_predicted  similar to hypothetical protein FLJ31606 (predicted)  LOC292078  similar to hypothetical protein FLJ31606  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC292078  similar to hypothetical protein FLJ31606      Symbol and Name status set to provisional 70820 PROVISIONAL