Spata33 (spermatogenesis associated 33) - Rat Genome Database

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Gene: Spata33 (spermatogenesis associated 33) Ictidomys tridecemlineatus
Analyze
Symbol: Spata33
Name: spermatogenesis associated 33
RGD ID: 12600914
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN fertilization (ortholog); flagellated sperm motility (ortholog); mitophagy (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); Fanconi anemia complementation group A (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated protein 33
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,607,177 - 24,612,935 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936641360,941 - 366,496 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spata33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,607,177 - 24,612,935 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936641360,941 - 366,496 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,657,776 - 89,670,458 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,657,740 - 89,671,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,724,184 - 89,736,866 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,251,711 - 88,265,176 (+)NCBINCBI36Build 36hg18NCBI36
Celera1674,788,682 - 74,802,150 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,419,667 - 75,432,384 (+)NCBIHuRef
CHM1_11691,134,934 - 91,147,650 (+)NCBICHM1_1
T2T-CHM13v2.01695,742,587 - 95,755,273 (+)NCBIT2T-CHM13v2.0
Spata33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,939,572 - 123,948,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,939,571 - 123,948,785 (+)EnsemblGRCm39 Ensembl
GRCm388123,212,837 - 123,222,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,212,832 - 123,222,046 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,736,758 - 125,745,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,098,922 - 126,102,995 (+)NCBIMGSCv36mm8
Celera8127,451,851 - 127,461,090 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.08NCBI
Spata33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,155,033 - 68,167,415 (+)NCBIGRCr8
mRatBN7.21951,246,514 - 51,258,894 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,246,514 - 51,258,894 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,041,444 - 58,053,818 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,721,435 - 58,733,813 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,940,044 - 60,952,418 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,010,085 - 56,022,424 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,010,085 - 56,022,424 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,715,538 - 66,727,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,530,342 - 53,542,725 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1950,482,078 - 50,494,759 (+)NCBICelera
Cytogenetic Map19q12NCBI
Spata33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555413,223,552 - 3,232,837 (+)NCBIChiLan1.0ChiLan1.0
SPATA33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,448,101 - 99,529,147 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,361,476 - 105,418,859 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,411,406 - 70,425,847 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11690,017,678 - 90,031,020 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1690,017,678 - 90,031,020 (+)Ensemblpanpan1.1panPan2
SPATA33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16341,276 - 351,987 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26467,848 - 478,647 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1575,002,037 - 75,011,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl575,002,359 - 75,013,583 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666047488,619 - 498,033 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746294,432 - 302,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746294,427 - 302,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005335412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005335412   ⟹   XP_005335469
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934924,607,177 - 24,612,935 (-)NCBI
SpeTri2.0NW_004936641360,941 - 366,496 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005335469 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3256675 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005335469   ⟸   XM_005335412
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Spata33 ENTREZGENE