Spata33 (spermatogenesis associated 33) - Rat Genome Database

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Gene: Spata33 (spermatogenesis associated 33) Mus musculus
Analyze
Symbol: Spata33
Name: spermatogenesis associated 33
RGD ID: 1615560
MGI Page MGI
Description: Involved in mitophagy. Acts upstream of or within fertilization; flagellated sperm motility; and protein localization. Located in male germ cell nucleus; mitochondrion; and sperm mitochondrial sheath. Orthologous to human SPATA33 (spermatogenesis associated 33).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732415M23Rik; AI847264; hypothetical protein LOC320869; spermatogenesis-associated protein 33; uncharacterized protein C16orf55 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,939,572 - 123,948,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,939,571 - 123,948,785 (+)EnsemblGRCm39 Ensembl
GRCm388123,212,837 - 123,222,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,212,832 - 123,222,046 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,736,758 - 125,745,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,098,922 - 126,102,995 (+)NCBIMGSCv36mm8
Celera8127,451,851 - 127,461,090 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21873635   PMID:23844118  
PMID:33087875   PMID:34446558   PMID:35536443  


Genomics

Comparative Map Data
Spata33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,939,572 - 123,948,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,939,571 - 123,948,785 (+)EnsemblGRCm39 Ensembl
GRCm388123,212,837 - 123,222,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,212,832 - 123,222,046 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,736,758 - 125,745,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,098,922 - 126,102,995 (+)NCBIMGSCv36mm8
Celera8127,451,851 - 127,461,090 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.08NCBI
SPATA33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,657,776 - 89,670,458 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,657,740 - 89,671,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,724,184 - 89,736,866 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,251,711 - 88,265,176 (+)NCBINCBI36Build 36hg18NCBI36
Celera1674,788,682 - 74,802,150 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,419,667 - 75,432,384 (+)NCBIHuRef
CHM1_11691,134,934 - 91,147,650 (+)NCBICHM1_1
T2T-CHM13v2.01695,742,587 - 95,755,273 (+)NCBIT2T-CHM13v2.0
Spata33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,155,033 - 68,167,415 (+)NCBIGRCr8
mRatBN7.21951,246,514 - 51,258,894 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,246,514 - 51,258,894 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,041,444 - 58,053,818 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,721,435 - 58,733,813 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,940,044 - 60,952,418 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01956,010,085 - 56,022,424 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1956,010,085 - 56,022,424 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,715,538 - 66,727,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,530,342 - 53,542,725 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1950,482,078 - 50,494,759 (+)NCBICelera
Cytogenetic Map19q12NCBI
Spata33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555413,223,552 - 3,232,837 (+)NCBIChiLan1.0ChiLan1.0
SPATA33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,448,101 - 99,529,147 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,361,476 - 105,418,859 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,411,406 - 70,425,847 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11690,017,678 - 90,031,020 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1690,017,678 - 90,031,020 (+)Ensemblpanpan1.1panPan2
Spata33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,607,177 - 24,612,935 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936641360,941 - 366,496 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16341,276 - 351,987 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26467,848 - 478,647 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1575,002,037 - 75,011,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl575,002,359 - 75,013,583 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666047488,619 - 498,033 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746294,432 - 302,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746294,427 - 302,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spata33
286 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:160
Count of miRNA genes:151
Interacting mature miRNAs:156
Transcripts:ENSMUST00000060133
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse

Markers in Region
AI847264  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,221,828 - 123,221,908UniSTSGRCm38
MGSCv378125,745,728 - 125,745,808UniSTSGRCm37
Celera8127,460,873 - 127,460,953UniSTS
Cytogenetic Map8E1UniSTS
Whitehead/MRC_RH81428.26UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000060133   ⟹   ENSMUSP00000058002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,623 - 123,948,783 (+)Ensembl
GRCm38.p6 Ensembl8123,212,884 - 123,222,044 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212161   ⟹   ENSMUSP00000148452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,615 - 123,943,644 (+)Ensembl
GRCm38.p6 Ensembl8123,212,876 - 123,216,905 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,992 - 123,948,784 (+)Ensembl
GRCm38.p6 Ensembl8123,213,253 - 123,222,045 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212346   ⟹   ENSMUSP00000148519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,635 - 123,941,515 (+)Ensembl
GRCm38.p6 Ensembl8123,212,896 - 123,214,776 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212523   ⟹   ENSMUSP00000148358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,579 - 123,948,784 (+)Ensembl
GRCm38.p6 Ensembl8123,212,840 - 123,222,045 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212637   ⟹   ENSMUSP00000148403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,637 - 123,948,785 (+)Ensembl
GRCm38.p6 Ensembl8123,212,898 - 123,222,046 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212760   ⟹   ENSMUSP00000148766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,571 - 123,943,644 (+)Ensembl
GRCm38.p6 Ensembl8123,212,832 - 123,216,905 (+)Ensembl
Ensembl Acc Id: ENSMUST00000212892   ⟹   ENSMUSP00000148396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8123,939,609 - 123,943,624 (+)Ensembl
GRCm38.p6 Ensembl8123,212,870 - 123,216,885 (+)Ensembl
RefSeq Acc Id: NM_177279   ⟹   NP_796253
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,939,597 - 123,948,784 (+)NCBI
GRCm388123,212,858 - 123,222,045 (+)NCBI
MGSCv378125,736,758 - 125,745,945 (+)RGD
Celera8127,451,851 - 127,461,090 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531111   ⟹   XP_006531174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,939,572 - 123,943,650 (+)NCBI
GRCm388123,212,837 - 123,216,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531112   ⟹   XP_006531175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,939,572 - 123,948,784 (+)NCBI
GRCm388123,212,837 - 123,222,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531113   ⟹   XP_006531176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,939,572 - 123,943,650 (+)NCBI
GRCm388123,212,837 - 123,216,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248408   ⟹   XP_011246710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398123,939,572 - 123,948,784 (+)NCBI
GRCm388123,212,837 - 123,222,045 (+)NCBI
Sequence:
RefSeq Acc Id: NP_796253   ⟸   NM_177279
- UniProtKB: Q8C624 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006531175   ⟸   XM_006531112
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006531174   ⟸   XM_006531111
- Peptide Label: isoform X1
- UniProtKB: A0A1D5RLP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531176   ⟸   XM_006531113
- Peptide Label: isoform X4
- UniProtKB: A0A1D5RLV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246710   ⟸   XM_011248408
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSMUSP00000058002   ⟸   ENSMUST00000060133
Ensembl Acc Id: ENSMUSP00000148403   ⟸   ENSMUST00000212637
Ensembl Acc Id: ENSMUSP00000148358   ⟸   ENSMUST00000212523
Ensembl Acc Id: ENSMUSP00000148396   ⟸   ENSMUST00000212892
Ensembl Acc Id: ENSMUSP00000148766   ⟸   ENSMUST00000212760
Ensembl Acc Id: ENSMUSP00000148452   ⟸   ENSMUST00000212161
Ensembl Acc Id: ENSMUSP00000148519   ⟸   ENSMUST00000212346

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C624-F1-model_v2 AlphaFold Q8C624 1-132 view protein structure

Promoters
RGD ID:8668557
Promoter ID:EPDNEW_M12309
Type:initiation region
Name:Spata33_1
Description:Mus musculus spermatogenesis associated 33 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388123,212,920 - 123,212,980EPDNEW
RGD ID:6842938
Promoter ID:MM_KWN:56048
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_145606,   NM_177279
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368125,735,746 - 125,736,697 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444920 AgrOrtholog
Ensembl Genes ENSMUSG00000048478 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060133 ENTREZGENE
  ENSMUST00000060133.8 UniProtKB/Swiss-Prot
  ENSMUST00000212161 ENTREZGENE
  ENSMUST00000212161.2 UniProtKB/TrEMBL
  ENSMUST00000212346 ENTREZGENE
  ENSMUST00000212346.2 UniProtKB/TrEMBL
  ENSMUST00000212523.2 UniProtKB/TrEMBL
  ENSMUST00000212637.2 UniProtKB/TrEMBL
  ENSMUST00000212760.2 UniProtKB/TrEMBL
  ENSMUST00000212892.2 UniProtKB/TrEMBL
InterPro DUF4609 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:320869 UniProtKB/Swiss-Prot
MGD MGI:2444920 ENTREZGENE
NCBI Gene 320869 ENTREZGENE
PANTHER PTHR38649 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4609 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spata33 PhenoGen
UniProt A0A1D5RLG4_MOUSE UniProtKB/TrEMBL
  A0A1D5RLJ7_MOUSE UniProtKB/TrEMBL
  A0A1D5RLK4_MOUSE UniProtKB/TrEMBL
  A0A1D5RLP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A1D5RLV5 ENTREZGENE, UniProtKB/TrEMBL
  Q0P5V0_MOUSE UniProtKB/TrEMBL
  Q8C624 ENTREZGENE
  Q8CEB5_MOUSE UniProtKB/TrEMBL
  SPT33_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-30 Spata33  spermatogenesis associated 33  4732415M23Rik  RIKEN cDNA 4732415M23 gene  Symbol and/or name change 5135510 APPROVED