Ubxn2a (UBX domain protein 2A) - Rat Genome Database

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Gene: Ubxn2a (UBX domain protein 2A) Rattus norvegicus
Analyze
Symbol: Ubxn2a
Name: UBX domain protein 2A
RGD ID: 1589027
Description: Predicted to enable acetylcholine receptor binding activity and ubiquitin binding activity. Acts upstream of or within regulation of gene expression. Predicted to be located in cis-Golgi network and endoplasmic reticulum. Predicted to be active in cytosol and nucleus. Orthologous to human UBXN2A (UBX domain protein 2A); INTERACTS WITH bisphenol A; cobalt dichloride; leflunomide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362716; LOC685859; similar to UBX domain containing 4; UBX domain containing 4; UBX domain-containing protein 2A; Ubxd4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC100910099  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2627,884,253 - 27,912,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl627,884,680 - 27,912,649 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx628,176,616 - 28,205,014 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0628,492,515 - 28,520,913 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0627,967,067 - 27,995,468 (-)NCBIRnor_WKY
Rnor_6.0628,969,471 - 28,997,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl628,973,025 - 28,994,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0640,889,150 - 40,917,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4629,554,836 - 29,558,146 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera627,352,834 - 27,380,729 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. UBXD4, a UBX-containing protein, regulates the cell surface number and stability of alpha3-containing nicotinic acetylcholine receptors. Rezvani K, etal., J Neurosci. 2009 May 27;29(21):6883-96. doi: 10.1523/JNEUROSCI.4723-08.2009.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20439489   PMID:26265139  


Genomics

Comparative Map Data
Ubxn2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2627,884,253 - 27,912,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl627,884,680 - 27,912,649 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx628,176,616 - 28,205,014 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0628,492,515 - 28,520,913 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0627,967,067 - 27,995,468 (-)NCBIRnor_WKY
Rnor_6.0628,969,471 - 28,997,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl628,973,025 - 28,994,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0640,889,150 - 40,917,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4629,554,836 - 29,558,146 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera627,352,834 - 27,380,729 (-)NCBICelera
Cytogenetic Map6q14NCBI
UBXN2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38223,927,278 - 24,004,909 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl223,927,285 - 24,004,909 (+)EnsemblGRCh38hg38GRCh38
GRCh37224,163,333 - 24,227,779 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36224,016,880 - 24,077,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 34224,075,026 - 24,135,342NCBI
Celera224,003,779 - 24,064,099 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef223,902,602 - 23,962,865 (+)NCBIHuRef
CHM1_1224,092,767 - 24,153,048 (+)NCBICHM1_1
T2T-CHM13v2.0223,975,156 - 24,039,606 (+)NCBIT2T-CHM13v2.0
Ubxn2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,926,814 - 4,957,749 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,929,032 - 4,957,705 (-)EnsemblGRCm39 Ensembl
GRCm38124,876,814 - 4,907,553 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,879,032 - 4,907,705 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,885,838 - 4,914,326 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36124,904,898 - 4,933,359 (-)NCBIMGSCv36mm8
Celera124,810,435 - 4,838,841 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
Ubxn2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554696,173,524 - 6,214,568 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554696,173,524 - 6,214,568 (+)NCBIChiLan1.0ChiLan1.0
UBXN2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A24,026,807 - 24,097,309 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A24,038,567 - 24,097,309 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A23,928,207 - 24,003,550 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
UBXN2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11718,446,856 - 18,491,797 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1718,408,251 - 18,505,676 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1718,345,749 - 18,390,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01718,617,026 - 18,661,775 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11718,458,087 - 18,502,677 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01718,466,249 - 18,511,348 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01718,507,971 - 18,552,677 (+)NCBIUU_Cfam_GSD_1.0
Ubxn2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,854,174 - 62,867,829 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364937,969,271 - 7,978,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBXN2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3114,673,035 - 114,714,178 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13114,667,278 - 114,714,185 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23121,938,609 - 121,979,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBXN2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11483,672,327 - 83,722,961 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1483,673,282 - 83,703,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604528,439,005 - 28,494,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubxn2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247386,323,404 - 6,341,996 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247386,313,925 - 6,341,999 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH131262  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera627,356,039 - 27,356,245UniSTS
CeleraX103,350,950 - 103,351,146UniSTS
Cytogenetic Map6q14UniSTS
Cytogenetic MapXq35UniSTS
RH141013  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2528,473,660 - 28,473,859 (+)MAPPERmRatBN7.2
mRatBN7.2627,884,774 - 27,884,972 (-)MAPPERmRatBN7.2
mRatBN7.2627,884,774 - 27,884,972 (+)MAPPERmRatBN7.2
mRatBN7.2528,473,660 - 28,473,859 (-)MAPPERmRatBN7.2
Rnor_6.0528,629,109 - 28,629,306NCBIRnor6.0
Rnor_6.0628,969,993 - 28,970,190NCBIRnor6.0
Rnor_5.0533,306,053 - 33,306,250UniSTSRnor5.0
Rnor_5.0640,916,940 - 40,917,137UniSTSRnor5.0
RGSC_v3.4529,557,427 - 29,557,624UniSTSRGSC3.4
RGSC_v3.4628,184,821 - 28,185,018UniSTSRGSC3.4
Celera627,353,356 - 27,353,553UniSTS
Celera527,704,391 - 27,704,546UniSTS
Cytogenetic Map6q14UniSTS
Cytogenetic Map5q13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:133
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000006668
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 41 50 34 17 34 8 10 60 34 40 11 8
Low 2 2 7 7 2 7 1 14 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006668   ⟹   ENSRNOP00000006668
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl628,973,025 - 28,994,519 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098597   ⟹   ENSRNOP00000076999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl627,884,680 - 27,912,649 (-)Ensembl
RefSeq Acc Id: NM_001109482   ⟹   NP_001102952
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,884,253 - 27,912,709 (-)NCBI
Rnor_6.0628,969,471 - 28,997,927 (-)NCBI
Rnor_5.0640,889,150 - 40,917,659 (+)NCBI
RGSC_v3.4629,554,836 - 29,558,146 (+)RGD
Celera627,352,834 - 27,380,729 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239861   ⟹   XP_006239923
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,884,364 - 27,912,709 (-)NCBI
Rnor_6.0628,969,582 - 28,997,987 (-)NCBI
Rnor_5.0640,889,150 - 40,917,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112930   ⟹   XP_038968858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,884,641 - 27,912,678 (-)NCBI
RefSeq Acc Id: XM_039112931   ⟹   XP_038968859
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,884,641 - 27,912,518 (-)NCBI
RefSeq Acc Id: XM_039112932   ⟹   XP_038968860
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,884,641 - 27,912,678 (-)NCBI
RefSeq Acc Id: XM_039112933   ⟹   XP_038968861
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,884,364 - 27,912,678 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102952   ⟸   NM_001109482
- UniProtKB: D3ZID8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239923   ⟸   XM_006239861
- Peptide Label: isoform X1
- UniProtKB: D3ZID8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006668   ⟸   ENSRNOT00000006668
RefSeq Acc Id: XP_038968861   ⟸   XM_039112933
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968860   ⟸   XM_039112932
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968858   ⟸   XM_039112930
- Peptide Label: isoform X1
- UniProtKB: D3ZID8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968859   ⟸   XM_039112931
- Peptide Label: isoform X1
- UniProtKB: D3ZID8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076999   ⟸   ENSRNOT00000098597
Protein Domains
SEP   UBX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZID8-F1-model_v2 AlphaFold D3ZID8 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589027 AgrOrtholog
BioCyc Gene G2FUF-38258 BioCyc
Ensembl Genes ENSRNOG00000004950 Ensembl
  ENSRNOG00000065514 UniProtKB/TrEMBL
  ENSRNOG00000068687 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000076999 ENTREZGENE
  ENSRNOP00000076999.1 UniProtKB/TrEMBL
  ENSRNOP00000097141.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000098597 ENTREZGENE
  ENSRNOT00000098597.1 UniProtKB/TrEMBL
  ENSRNOT00000112658.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.210 UniProtKB/TrEMBL
InterPro NSFL1C_SEP_dom_sf UniProtKB/TrEMBL
  SEP_domain UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
KEGG Report rno:685859 UniProtKB/TrEMBL
NCBI Gene 685859 ENTREZGENE
Pfam SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
PhenoGen Ubxn2a PhenoGen
PROSITE SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
SMART SEP UniProtKB/TrEMBL
Superfamily-SCOP SEP UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt D3ZID8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Ubxn2a  UBX domain protein 2A  LOC100363283  UBX domain protein 2A  Data Merged 1643240 APPROVED
2010-05-07 Ubxn2a  UBX domain protein 2A  Ubxd4  UBX domain containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100363283  UBX domain protein 2A      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-06-15 Ubxd4  UBX domain containing 4  Ubxd4_predicted  UBX domain containing 4 (predicted)  Data Merged 1643240 APPROVED
2008-03-05 Ubxd4  UBX domain containing 4  LOC685859  similar to UBX domain containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685859  similar to UBX domain containing 4  LOC683882  similar to UBX domain containing 4  Data Merged 1643240 APPROVED
2006-11-20 LOC683882  similar to UBX domain containing 4      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685859  similar to UBX domain containing 4      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Ubxd4_predicted  UBX domain containing 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED